Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Crp in Shewanella loihica PV-4

Properties
Regulator type: Transcription factor
TF locus tag: Shew_0585
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Regulog: Crp - Shewanellaceae
Statistics of regulated genes:
- Genes 235
- Operons 126
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 2713 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -134
Score: 3.9
Sequence: AAGTTAGAATCAGATCACACTT
Locus tag: Shew_2426
Name: fadI
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Locus tag: Shew_2425
Name: fadJ
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Shew_2426
fadI
3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Shew_2425
fadJ
Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Position: -111
Score: 3.9
Sequence: AAATGTGATGTTCCCCTAAAAG
Position: -73
Score: 4.8
Sequence: TATTGTGAACGGATTCAAAAAA
Locus tag: Shew_1904
Name: fumB
Funciton: Fumarate hydratase class I, aerobic (EC 4.2.1.2)
Shew_1904
fumB
Fumarate hydratase class I, aerobic (EC 4.2.1.2)
Position: -247
Score: 3.8
Sequence: ATTTGCGATCCGCTTGGCAATA
Locus tag: Shew_3657
Name: prlC
Funciton: Oligopeptidase A (EC 3.4.24.70)
Shew_3657
prlC
Oligopeptidase A (EC 3.4.24.70)
Position: -182
Score: 4
Sequence: TATTGTGAAATCGCACAGAAAA
Locus tag: Shew_3412
Name: purH
Funciton: IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
Locus tag: Shew_3413
Name: purD
Funciton: Phosphoribosylamine--glycine ligase (EC 6.3.4.13)
Shew_3412
purH
IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
Shew_3413
purD
Phosphoribosylamine--glycine ligase (EC 6.3.4.13)
Position: -99
Score: 4.1
Sequence: AACTATGACATTGTTCAAAAAA
Locus tag: Shew_0560
Name: null
Funciton: hypothetical protein
Shew_0560
hypothetical protein
Position: -150
Score: 4.4
Sequence: AAACGTGAGATTGCTCACTATT
Locus tag: Shew_2760
Name: icd
Funciton: Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)
Shew_2760
icd
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)
Position: -295
Score: 4.1
Sequence: AAGTATGAATCAGATCACACTC
Locus tag: Shew_3425
Name: yniC
Funciton: 2-deoxyglucose-6-phosphate hydrolase YniC
Shew_3425
yniC
2-deoxyglucose-6-phosphate hydrolase YniC
Position: -151
Score: 3.9
Sequence: ATTCGCGAGCCAAGTCACGAAT
Position: -110
Score: 4.6
Sequence: TGGCGTGATCCATTTCACCTTT
Locus tag: Shew_0272
Name: SO1410
Funciton: conserved domain protein
Shew_0272
SO1410
conserved domain protein
Position: -110
Score: 3.8
Sequence: TTTTGGGCAGCGCTTCACACTT
Locus tag: Shew_1035
Name: SO1328
Funciton: transcriptional regulator, LysR family
Shew_1035
SO1328
transcriptional regulator, LysR family
Position: -49
Score: 4.9
Sequence: TTTTGTGACGTAATGCACACTA
Locus tag: Shew_3003
Name: fadE
Funciton: acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Shew_3003
fadE
acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Position: -97
Score: 4.4
Sequence: TATTGTGATGCCCTTAAGACTT
Locus tag: Shew_0904
Name: SO3588
Funciton: gpr1/fun34/yaaH family protein
Shew_0904
SO3588
gpr1/fun34/yaaH family protein
Position: -132
Score: 4.2
Sequence: AATTGTGATCGGCGTGGCAATT
Locus tag: Shew_1556
Name: SO2637
Funciton: hypothetical protein
Shew_1556
SO2637
hypothetical protein
Position: -137
Score: 4.4
Sequence: TTGTTTGACGTAATTCACAAAG
Locus tag: Shew_0277
Name: SO1415
Funciton: transcriptional regulator, TetR family
Shew_0277
SO1415
transcriptional regulator, TetR family
Position: -133
Score: 4
Sequence: AAGTGTGATCTAAATCTATTTG
Locus tag: Shew_2814
Name: deoA
Funciton: thymidine phosphorylase (EC 2.4.2.4)
Locus tag: Shew_2813
Name: deoB
Funciton: phosphopentomutase (EC 5.4.2.7)
Locus tag: Shew_2812
Name: deoD-2
Funciton: purine nucleoside phosphorylase (EC 2.4.2.1)
Shew_2814
deoA
thymidine phosphorylase (EC 2.4.2.4)
Shew_2813
deoB
phosphopentomutase (EC 5.4.2.7)
Shew_2812
deoD-2
purine nucleoside phosphorylase (EC 2.4.2.1)
Position: -154
Score: 3.8
Sequence: AACTTTGATCTCGATCTACAAA
Locus tag: Shew_3205
Name: napD
Funciton: periplasmic nitrate reductase component NapD
Locus tag: Shew_3206
Name: napA
Funciton: periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Shew_3207
Name: napG
Funciton: ferredoxin-type protein NapG (periplasmic nitrate reductase)
Locus tag: Shew_3208
Name: napH
Funciton: polyferredoxin NapH (periplasmic nitrate reductase)
Locus tag: Shew_3209
Name: napB
Funciton: nitrate reductase cytochrome c550-type subunit
Shew_3205
napD
periplasmic nitrate reductase component NapD
Shew_3206
napA
periplasmic nitrate reductase precursor (EC 1.7.99.4)
Shew_3207
napG
ferredoxin-type protein NapG (periplasmic nitrate reductase)
Shew_3208
napH
polyferredoxin NapH (periplasmic nitrate reductase)
Shew_3209
napB
nitrate reductase cytochrome c550-type subunit
Position: -120
Score: 4.5
Sequence: TTTTGTTAAGCAGATCAAAATA
Locus tag: Shew_1972
Name: SO1419
Funciton: lipoprotein, putative
Locus tag: Shew_1973
Name: SO1420
Funciton: outer membrane porin, putative
Shew_1972
SO1419
lipoprotein, putative
Shew_1973
SO1420
outer membrane porin, putative
Position: -127
Score: 4.1
Sequence: TTTGATGATCCAGTTCAAACTA
Locus tag: Shew_0054
Name: null
Funciton: hypothetical protein
Locus tag: Shew_0055
Name: SO4505
Funciton: hypothetical protein probably related to Formate dehydrogenase function
Locus tag: Shew_0056
Name: SO4506
Funciton: iron-sulfur cluster-binding protein
Locus tag: Shew_0057
Name: SO4507
Funciton: putative formate dehydrogenase-specific chaperone
Locus tag: Shew_0058
Name: SO4508
Funciton: formate dehydrogenase subunit or accessory protein
Locus tag: Shew_0059
Name: SO4509
Funciton: formate dehydrogenase-O, major subunit (EC 1.2.1.2)
Locus tag: Shew_0060
Name: fdhB-1
Funciton: formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
Locus tag: Shew_0061
Name: SO4511
Funciton: formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
Shew_0054
hypothetical protein
Shew_0055
SO4505
hypothetical protein probably related to Formate dehydrogenase function
Shew_0056
SO4506
iron-sulfur cluster-binding protein
Shew_0057
SO4507
putative formate dehydrogenase-specific chaperone
Shew_0058
SO4508
formate dehydrogenase subunit or accessory protein
Shew_0059
SO4509
formate dehydrogenase-O, major subunit (EC 1.2.1.2)
Shew_0060
fdhB-1
formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
Shew_0061
SO4511
formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
Position: -130
Score: 4.1
Sequence: TACTATGATCTGCTTCTAATTT
Position: -101
Score: 3.9
Sequence: TAATGAGCCCCGCCTCAAATTT
Locus tag: Shew_0570
Name: petA
Funciton: ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)
Locus tag: Shew_0571
Name: petB
Funciton: ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)
Locus tag: Shew_0572
Name: petC
Funciton: ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit
Locus tag: Shew_0573
Name: sspA
Funciton: stringent starvation protein A
Locus tag: Shew_0574
Name: sspB
Funciton: stringent starvation protein B
Shew_0570
petA
ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)
Shew_0571
petB
ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)
Shew_0572
petC
ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit
Shew_0573
sspA
stringent starvation protein A
Shew_0574
sspB
stringent starvation protein B
Position: -237
Score: 3.8
Sequence: ATTTATGATGTCGGCCAACTAA
Position: -217
Score: 4.1
Sequence: AAATGTGATCGATAGCAAAACG
Locus tag: Shew_1563
Name: icd
Funciton: isocitrate dehydrogenase [NADP] (EC 1.1.1.42); monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
Shew_1563
icd
isocitrate dehydrogenase [NADP] (EC 1.1.1.42); monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
Position: -55
Score: 4
Sequence: TTTCGTGACCTAGATTAGACTT
Locus tag: Shew_0041
Name: SO0141
Funciton: sensory box/GGDEF family protein
Shew_0041
SO0141
sensory box/GGDEF family protein
Position: -94
Score: 4.6
Sequence: TGTTGTAATCTATATCATATTT
Locus tag: Shew_1811
Name: ycbW
Funciton: probable membrane protein YcbW
Shew_1811
ycbW
probable membrane protein YcbW
Position: -110
Score: 4.7
Sequence: TTTTGTGCTCCAATTAACATTA
Locus tag: Shew_3776
Name: SO0075
Funciton: long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Shew_3776
SO0075
long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -99
Score: 4
Sequence: TATTGTGATTTAATACAATTTG
Locus tag: Shew_2816
Name: tsx
Funciton: nucleoside-specific channel-forming protein, Tsx
Shew_2816
tsx
nucleoside-specific channel-forming protein, Tsx
Position: -123
Score: 4.3
Sequence: TAACTTGAACTGGCTCACGTAA
Locus tag: Shew_1497
Name: Sfri_2271
Funciton: permease of the major facilitator superfamily
Locus tag: Shew_1498
Name: Sfri_2272
Funciton: hypothetical protein
Locus tag: Shew_1499
Name: Sfri_2273
Funciton: nitrogen regulatory protein P-II
Locus tag: Shew_1500
Name: Sfri_2274
Funciton: hypothetical protein
Shew_1497
Sfri_2271
permease of the major facilitator superfamily
Shew_1498
Sfri_2272
hypothetical protein
Shew_1499
Sfri_2273
nitrogen regulatory protein P-II
Shew_1500
Sfri_2274
hypothetical protein
Position: -234
Score: 3.9
Sequence: CGATGTGAAGCTGATCACTCTA
Locus tag: Shew_0760
Name: cadC
Funciton: transcriptional regulator-related protein
Locus tag: Shew_0761
Name: SO0941
Funciton: hypothetical protein
Shew_0760
cadC
transcriptional regulator-related protein
Shew_0761
SO0941
hypothetical protein
Position: -128
Score: 4.6
Sequence: TTTCGCGATCTTCCTCACACAT
Locus tag: Shew_3623
Name: pckA
Funciton: phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Shew_3623
pckA
phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Position: -137
Score: 4.2
Sequence: AACTGTGATGTGATCCGCAGAA
Locus tag: Shew_3153
Name: Sama_2899
Funciton: transcriptional regulator, LysR family
Shew_3153
Sama_2899
transcriptional regulator, LysR family
Position: -147
Score: 5.1
Sequence: AGATTTGATGTAAATCACATTT
Position: -82
Score: 4.4
Sequence: TAAAGTGACCTGTCTCACACCT
Locus tag: Shew_0778
Name: SO3987
Funciton: hypothetical protein
Shew_0778
SO3987
hypothetical protein
Position: -94
Score: 4.9
Sequence: CAATGTGATCTGCTTCACACTC
Locus tag: Shew_0455
Name: Sama_3134
Funciton: membrane protein
Shew_0455
Sama_3134
membrane protein
Position: -129
Score: 4.5
Sequence: TTTTTTGATCTAGCTCAATTTT
Position: -110
Score: 4.8
Sequence: TTTTGTGAGCCTAATAACAATT
Locus tag: Shew_0613
Name: cydD
Funciton: Transport ATP-binding protein CydD
Locus tag: Shew_0614
Name: cydC
Funciton: Transport ATP-binding protein CydC
Shew_0613
cydD
Transport ATP-binding protein CydD
Shew_0614
cydC
Transport ATP-binding protein CydC
Position: -146
Score: 3.9
Sequence: AAGAGTGTCCCTCGTCACATTT
Locus tag: Shew_0615
Name: SO3774
Funciton: proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Shew_0615
SO3774
proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Position: -26
Score: 3.7
Sequence: ATCTGTGATCTGATTCGAGACT
Locus tag: Shew_0818
Name: SO3797
Funciton: probable collagenase (EC 3.4.24.3)
Shew_0818
SO3797
probable collagenase (EC 3.4.24.3)
Position: -156
Score: 4.5
Sequence: AAATGTGACCAACAACACATTC
Position: -133
Score: 4.2
Sequence: CATTATGATCTGCCTCAAGTTT
Locus tag: Shew_0844
Name: nrfA
Funciton: cytochrome c552 precursor (EC 1.7.2.2)
Shew_0844
nrfA
cytochrome c552 precursor (EC 1.7.2.2)
Position: -115
Score: 4.3
Sequence: TTATGTGCTGATTGTCACGAAA
Locus tag: Shew_0757
Name: cadC
Funciton: transcriptional regulator-related protein
Shew_0757
cadC
transcriptional regulator-related protein
Position: -234
Score: 4.2
Sequence: AAATGTGAAGCGTGTAACATCA
Locus tag: Shew_2677
Name: fixA
Funciton: electron transfer flavoprotein, beta subunit FixA
Locus tag: Shew_2678
Name: fixB
Funciton: electron transfer flavoprotein, alpha subunit FixB
Locus tag: Shew_2679
Name: fixC
Funciton: probable electron transfer flavoprotein-quinone oxidoreductase FixC (EC 1.5.5.-)
Locus tag: Shew_2680
Name: fixX
Funciton: ferredoxin-like protein FixX
Shew_2677
fixA
electron transfer flavoprotein, beta subunit FixA
Shew_2678
fixB
electron transfer flavoprotein, alpha subunit FixB
Shew_2679
fixC
probable electron transfer flavoprotein-quinone oxidoreductase FixC (EC 1.5.5.-)
Shew_2680
fixX
ferredoxin-like protein FixX
Position: -84
Score: 4.2
Sequence: AAATGTGATCTGGATCAAGTGG
Locus tag: Shew_3102
Name: null
Funciton: hypothetical protein
Shew_3102
hypothetical protein
Position: -99
Score: 4.9
Sequence: TATTTTGATCTGCTTAACAAAA
Locus tag: Shew_1971
Name: apbE
Funciton: thiamin biosynthesis lipoprotein ApbE
Shew_1971
apbE
thiamin biosynthesis lipoprotein ApbE
Position: -95
Score: 4.4
Sequence: AAATATTACCCCGATCACATAA
Locus tag: Shew_3716
Name: cytcB
Funciton: diheme cytochrome c4
Shew_3716
cytcB
diheme cytochrome c4
Position: -223
Score: 4.8
Sequence: TTTTGTGATTAATATCAGAATT
Locus tag: Shew_0190
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: Shew_0189
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: Shew_0188
Name: ccmC
Funciton: cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: Shew_0187
Name: ccmD
Funciton: cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: Shew_0186
Name: ccmE
Funciton: cytochrome c-type biogenesis protein CcmE, heme chaperone
Shew_0190
ccmA
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Shew_0189
ccmB
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Shew_0188
ccmC
cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Shew_0187
ccmD
cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Shew_0186
ccmE
cytochrome c-type biogenesis protein CcmE, heme chaperone
Position: -40
Score: 4.7
Sequence: AAGTGTGATCCTGTTAACAAAC
Locus tag: Shew_1435
Name: phhA
Funciton: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Locus tag: Shew_1436
Name: phhB
Funciton: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
Shew_1435
phhA
Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Shew_1436
phhB
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
Position: -296
Score: 4.6
Sequence: AAGTGTGATCTGATTCTAACTT
Locus tag: Shew_2427
Name: SO3090
Funciton: MoxR-like ATPase in aerotolerance operon
Locus tag: Shew_2428
Name: SO3091
Funciton: Conserved hypothetical protein
Locus tag: Shew_2429
Name: null
Funciton: hypothetical protein
Locus tag: Shew_2430
Name: SO3093
Funciton: von Willebrand factor type A domain protein
Locus tag: Shew_2431
Name: SO3094
Funciton: TPR domain protein in aerotolerance operon
Locus tag: Shew_2432
Name: SO3095
Funciton: hypothetical protein
Shew_2427
SO3090
MoxR-like ATPase in aerotolerance operon
Shew_2428
SO3091
Conserved hypothetical protein
Shew_2429
hypothetical protein
Shew_2430
SO3093
von Willebrand factor type A domain protein
Shew_2431
SO3094
TPR domain protein in aerotolerance operon
Shew_2432
SO3095
hypothetical protein
Position: -96
Score: 4.1
Sequence: TTTTGTGCGCATCTTCATAATT
Locus tag: Shew_0259
Name: ygbA
Funciton: nitrosative stress induced protein
Shew_0259
ygbA
nitrosative stress induced protein
Position: -224
Score: 4.6
Sequence: TAGTGTGACGCAGATCATGTTT
Position: -174
Score: 4.7
Sequence: ATATTTGATTAAGTGCACATTT
Locus tag: Shew_1724
Name: cctA
Funciton: cytochrome c3
Shew_1724
cctA
cytochrome c3
Position: -126
Score: 3.7
Sequence: CAATGTGACGTTTCGAATATAT
Position: -77
Score: 3.8
Sequence: ATAGTTGATCTCATTCACAGCT
Locus tag: Shew_0288
Name: ilvC
Funciton: Ketol-acid reductoisomerase (EC 1.1.1.86)
Shew_0288
ilvC
Ketol-acid reductoisomerase (EC 1.1.1.86)
Position: -242
Score: 3.8
Sequence: CAATTTGATATGCTTCCAAAAA
Position: -131
Score: 4.8
Sequence: AATTCTGATATTAATCACAAAA
Locus tag: Shew_0191
Name: scyA
Funciton: cytochrome c-type protein
Shew_0191
scyA
cytochrome c-type protein
Position: -282
Score: 4.6
Sequence: TTATGTGATATAGATCTAGATT
Locus tag: Shew_0866
Name: argR
Funciton: arginine pathway regulatory protein ArgR, repressor of arg regulon
Shew_0866
argR
arginine pathway regulatory protein ArgR, repressor of arg regulon
Position: -140
Score: 4.3
Sequence: GAGTGTGATCTGATTCATACTT
Locus tag: Shew_3424
Name: acnB
Funciton: aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
Shew_3424
acnB
aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
Position: -144
Score: 4.1
Sequence: TTGCTTGATATGCTTCACGCTA
Locus tag: Shew_3394
Name: Sputcn32_0539
Funciton: mechanosensitive ion channel
Shew_3394
Sputcn32_0539
mechanosensitive ion channel
Position: -206
Score: 4.7
Sequence: TTTTGTGAGCCGCCTCTCAAAA
Locus tag: Shew_1302
Name: cydA
Funciton: cytochrome d ubiquinol oxidase, subunit I, CydA
Locus tag: Shew_1303
Name: cydB
Funciton: cytochrome d ubiquinol oxidase, subunit II, CydB
Shew_1302
cydA
cytochrome d ubiquinol oxidase, subunit I, CydA
Shew_1303
cydB
cytochrome d ubiquinol oxidase, subunit II, CydB
Position: -92
Score: 4.6
Sequence: AAGTGTGATCAGGTTAACCTTA
Locus tag: Shew_3390
Name: udp
Funciton: Uridine phosphorylase (EC 2.4.2.3)
Shew_3390
udp
Uridine phosphorylase (EC 2.4.2.3)
Position: -136
Score: 3.9
Sequence: AAACTTGAGGCAGATCATAATG
Position: -113
Score: 4.4
Sequence: GAATGTGTTGTTGGTCACATTT
Locus tag: Shew_0843
Name: narQ
Funciton: Nitrate/nitrite sensor protein (EC 2.7.3.-)
Locus tag: Shew_0842
Name: narP
Funciton: Nitrate/nitrite response regulator protein
Shew_0843
narQ
Nitrate/nitrite sensor protein (EC 2.7.3.-)
Shew_0842
narP
Nitrate/nitrite response regulator protein
Position: -190
Score: 4.2
Sequence: TAGTGTTAACTCGATCAAACAA
Locus tag: Shew_0428
Name: SO0543
Funciton: hypothetical protein
Shew_0428
SO0543
hypothetical protein
Position: -109
Score: 3.9
Sequence: TAGCGTGAAGCATATCAAGCAA
Locus tag: Shew_3393
Name: SO4138
Funciton: hypothetical protein
Shew_3393
SO4138
hypothetical protein
Position: -245
Score: 5.2
Sequence: ATATGTGATCTAGATCACGTTG
Position: -155
Score: 4.2
Sequence: GATTGAGATATCTGTCACATAA
Locus tag: Shew_2518
Name: feoA
Funciton: Ferrous iron transport protein A
Locus tag: Shew_2517
Name: feoB
Funciton: Ferrous iron transport protein B
Shew_2518
feoA
Ferrous iron transport protein A
Shew_2517
feoB
Ferrous iron transport protein B
Position: -171
Score: 4.4
Sequence: AATAGTGAGCAATCTCACGTTT
Locus tag: Shew_2759
Name: SO1539
Funciton: Probable acylaminoacyl-peptidase (EC 3.4.19.1)
Shew_2759
SO1539
Probable acylaminoacyl-peptidase (EC 3.4.19.1)
Position: -75
Score: 4.2
Sequence: TTATTTGAACATGATCACGCTT
Locus tag: Shew_1667
Name: atoB
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: Shew_1668
Name: mmsA
Funciton: methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: Shew_1669
Name: SO1679
Funciton: branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: Shew_1670
Name: SO1680
Funciton: enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: Shew_1671
Name: SO1681
Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: Shew_1672
Name: mmsB
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: Shew_1673
Name: fabG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Shew_1667
atoB
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Shew_1668
mmsA
methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Shew_1669
SO1679
branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Shew_1670
SO1680
enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Shew_1671
SO1681
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Shew_1672
mmsB
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Shew_1673
fabG
3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Position: -88
Score: 5.1
Sequence: AAGTGTGATCCAGCTCTCAAAT
Locus tag: Shew_0319
Name: cyaA
Funciton: Adenylate cyclase (EC 4.6.1.1)
Shew_0319
cyaA
Adenylate cyclase (EC 4.6.1.1)
Position: -191
Score: 4.6
Sequence: TTATATGACCATAATCACAATT
Locus tag: Shew_2107
Name: SO2535
Funciton: Predicted glutamine amidotransferase
Shew_2107
SO2535
Predicted glutamine amidotransferase
Position: -101
Score: 3.6
Sequence: TATTGCCAAGCGGATCGCAAAT
Locus tag: Shew_3658
Name: null
Funciton: hypothetical protein
Shew_3658
hypothetical protein
Position: -61
Score: 5.1
Sequence: AATTGTTACTTAGATCACATAA
Locus tag: Shew_2154
Name: hmgA
Funciton: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
Shew_2154
hmgA
Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
Position: -140
Score: 3.8
Sequence: AACTGGTATTTTGATCACGTTT
Locus tag: Shew_0578
Name: astC
Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Locus tag: Shew_0579
Name: astA
Funciton: Arginine N-succinyltransferase (EC 2.3.1.109)
Locus tag: Shew_0580
Name: astD
Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Locus tag: Shew_0581
Name: SO0620
Funciton: FIG008480: hypothetical protein
Shew_0578
astC
Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Shew_0579
astA
Arginine N-succinyltransferase (EC 2.3.1.109)
Shew_0580
astD
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Shew_0581
SO0620
FIG008480: hypothetical protein
Position: -148
Score: 4.4
Sequence: AAAAGTGATTTTTATTGCATAT
Position: -127
Score: 4
Sequence: TACAGTGAATTATTTAACAAAT
Locus tag: Shew_1033
Name: SO1326
Funciton: COG1242: Predicted Fe-S oxidoreductase
Shew_1033
SO1326
COG1242: Predicted Fe-S oxidoreductase
Position: -95
Score: 4.4
Sequence: AAATATTACCCCGATCACATAA
Locus tag: Shew_3716
Name: cytcB
Funciton: Cytochrome c4
Shew_3716
cytcB
Cytochrome c4
Position: -125
Score: 4.5
Sequence: TAATTTGATCCGCTTCATAGTT
Locus tag: Shew_1069
Name: hcp
Funciton: Hydroxylamine reductase (EC 1.7.-.-)
Locus tag: Shew_1070
Name: hcr
Funciton: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
Shew_1069
hcp
Hydroxylamine reductase (EC 1.7.-.-)
Shew_1070
hcr
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
Position: -95
Score: 4.7
Sequence: TTATGTGATCGGGGTAATATTT
Locus tag: Shew_3715
Name: engB
Funciton: GTP-binding protein EngB
Shew_3715
engB
GTP-binding protein EngB
Position: -30
Score: 3.9
Sequence: TATTGAAATCATTTTCAAAAAA
Position: -9
Score: 4
Sequence: ATTTTTGATATGTATCATCTCA
Locus tag: Shew_0506
Name: SO4154
Funciton: transcriptional regulator, LysR family
Shew_0506
SO4154
transcriptional regulator, LysR family
Position: -107
Score: 4.3
Sequence: CAAGGTGATATAGAACACATAA
Locus tag: Shew_0200
Name: ppc
Funciton: phosphoenolpyruvate carboxylase (EC 4.1.1.31)
Locus tag: Shew_0199
Name: yceB
Funciton: uncharacterized lipoprotein YceB precursor
Shew_0200
ppc
phosphoenolpyruvate carboxylase (EC 4.1.1.31)
Shew_0199
yceB
uncharacterized lipoprotein YceB precursor
Position: -188
Score: 3.9
Sequence: AAGTTAGATTCGGCTCACAAAG
Locus tag: Shew_0739
Name: SO0919
Funciton: Serine transporter, putative
Locus tag: Shew_0740
Name: Sfri_0687
Funciton: L-serine dehydratase (EC 4.3.1.17)
Shew_0739
SO0919
Serine transporter, putative
Shew_0740
Sfri_0687
L-serine dehydratase (EC 4.3.1.17)
Position: -119
Score: 4.7
Sequence: ATTTGAGAGCTGGATCACACTT
Locus tag: Shew_0318
Name: hemC
Funciton: Porphobilinogen deaminase (EC 2.5.1.61)
Locus tag: Shew_0317
Name: hemD
Funciton: Uroporphyrinogen-III synthase (EC 4.2.1.75)
Locus tag: Shew_0316
Name: hemX
Funciton: Homolog of E. coli HemX protein
Locus tag: Shew_0315
Name: hemY
Funciton: HemY domain-containing protein
Shew_0318
hemC
Porphobilinogen deaminase (EC 2.5.1.61)
Shew_0317
hemD
Uroporphyrinogen-III synthase (EC 4.2.1.75)
Shew_0316
hemX
Homolog of E. coli HemX protein
Shew_0315
hemY
HemY domain-containing protein
Position: -279
Score: 3.8
Sequence: ATTAGTAATATATGTCAACTAA
Locus tag: Shew_0586
Name: sel1
Funciton: Sel1 domain protein repeat-containing protein precursor
Shew_0586
sel1
Sel1 domain protein repeat-containing protein precursor
Position: -124
Score: 4.3
Sequence: TATTTTGACGCCAGTCAAAAAA
Locus tag: Shew_0454
Name: SO0572
Funciton: enoyl-CoA hydratase (EC 4.2.1.17)
Shew_0454
SO0572
enoyl-CoA hydratase (EC 4.2.1.17)
Position: -321
Score: 4.4
Sequence: AAAAGTGATCTTGATCAATATT
Position: -264
Score: 4
Sequence: TTATTTGTTATATCGCACAATT
Locus tag: Shew_0125
Name: SO4606
Funciton: cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Locus tag: Shew_0124
Name: SO4607
Funciton: cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Locus tag: Shew_0123
Name: coxG
Funciton: cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
Locus tag: Shew_0122
Name: SO4609
Funciton: cytochrome c oxidase polypeptide III (EC 1.9.3.1)
Shew_0125
SO4606
cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Shew_0124
SO4607
cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Shew_0123
coxG
cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
Shew_0122
SO4609
cytochrome c oxidase polypeptide III (EC 1.9.3.1)
Position: -308
Score: 5.1
Sequence: TTTTGTGATAATGGTCACACTT
Locus tag: Shew_2074
Name: null
Funciton: TonB-dependent receptor
Shew_2074
TonB-dependent receptor
Position: -149
Score: 4.9
Sequence: TTGTGTGATGATGTTCAAAATT
Locus tag: Shew_2188
Name: fadD1
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Shew_2188
fadD1
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -138
Score: 4.1
Sequence: TTATGTGAGCTAGCTTGTATTT
Locus tag: Shew_3758
Name: hutC
Funciton: histidine utilization repressor
Locus tag: Shew_3757
Name: hutU
Funciton: urocanate hydratase (EC 4.2.1.49)
Locus tag: Shew_3756
Name: hutH
Funciton: histidine ammonia-lyase (EC 4.3.1.3)
Shew_3758
hutC
histidine utilization repressor
Shew_3757
hutU
urocanate hydratase (EC 4.2.1.49)
Shew_3756
hutH
histidine ammonia-lyase (EC 4.3.1.3)
Position: -226
Score: 4.6
Sequence: AGGTGTGATCCGTGTCGCAAAT
Position: -196
Score: 3.8
Sequence: TTACGTGAGTTTTATCATGTTG
Locus tag: Shew_3251
Name: SO3895
Funciton: HesA/MoeB/ThiF family protein related to EC-YgdL
Shew_3251
SO3895
HesA/MoeB/ThiF family protein related to EC-YgdL
Position: -98
Score: 4.4
Sequence: TGTTTTGATCTATCTCACGGTT
Locus tag: Shew_0333
Name: fdrC
Funciton: fumarate reductase cytochrome b subunit
Locus tag: Shew_0334
Name: frdA
Funciton: succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Shew_0335
Name: frdB
Funciton: succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Shew_0333
fdrC
fumarate reductase cytochrome b subunit
Shew_0334
frdA
succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Shew_0335
frdB
succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Position: -131
Score: 4.3
Sequence: CAGCGTGATTGCGATCGCATTT
Position: -73
Score: 4.1
Sequence: ATGTTTGAAATCTATCTCATTT
Locus tag: Shew_2881
Name: nqrA-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
Locus tag: Shew_2880
Name: nqrB-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-)
Locus tag: Shew_2879
Name: nqrC-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-)
Locus tag: Shew_2878
Name: nqrD-1
Funciton: Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-)
Locus tag: Shew_2877
Name: nqrE-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-)
Locus tag: Shew_2876
Name: nqrF-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-)
Shew_2881
nqrA-2
Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
Shew_2880
nqrB-2
Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-)
Shew_2879
nqrC-2
Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-)
Shew_2878
nqrD-1
Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-)
Shew_2877
nqrE-2
Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-)
Shew_2876
nqrF-2
Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-)
Position: -217
Score: 3.9
Sequence: AAATGTGACACAGGCAACAAAC
Locus tag: Shew_3389
Name: SO4131
Funciton: nucleoside-binding outer membrane protein
Shew_3389
SO4131
nucleoside-binding outer membrane protein
Position: -164
Score: 3.8
Sequence: AAACTTGATCCAGCTCATAGCT
Position: -103
Score: 3.7
Sequence: AATGTTGACATACATCAACATT
Locus tag: Shew_1765
Name: hyaA
Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: Shew_1764
Name: hyaB
Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: Shew_1763
Name: hydC
Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: Shew_1762
Name: hyaD
Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: Shew_1761
Name: hyaE
Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: Shew_1760
Name: hyaF
Funciton: NiFe hydrogenase assembly protein, HypF
Shew_1765
hyaA
Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Shew_1764
hyaB
Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Shew_1763
hydC
Ni,Fe-hydrogenase I cytochrome b subunit
Shew_1762
hyaD
Hydrogenase maturation protease (EC 3.4.24.-)
Shew_1761
hyaE
NiFe hydrogenase assembly chaperone, HyaE
Shew_1760
hyaF
NiFe hydrogenase assembly protein, HypF
Position: -227
Score: 3.8
Sequence: AAGCGTGATCCTGTGCTAACTT
Position: -77
Score: 4.2
Sequence: AAACTTGAGGCGCATCAAAATT
Locus tag: Shew_0699
Name: nhaD
Funciton: Na+/H+ antiporter NhaD type
Shew_0699
nhaD
Na+/H+ antiporter NhaD type
Position: -178
Score: 4.5
Sequence: TTTTTTGATATTGCTCAAGTAT
Locus tag: Shew_1985
Name: ccoN
Funciton: Cbb3-type cytochrome c oxidase, subunit I, CcoN
Locus tag: Shew_1986
Name: ccoO
Funciton: Cbb3-type cytochrome c oxidase, subunit II, CcoO
Locus tag: Shew_1987
Name: ccoQ
Funciton: Cbb3-type cytochrome c oxidase, subunit IV, CcoQ
Locus tag: Shew_1988
Name: ccoP
Funciton: Cbb3-type cytochrome c oxidase, subunit III, CcoP
Shew_1985
ccoN
Cbb3-type cytochrome c oxidase, subunit I, CcoN
Shew_1986
ccoO
Cbb3-type cytochrome c oxidase, subunit II, CcoO
Shew_1987
ccoQ
Cbb3-type cytochrome c oxidase, subunit IV, CcoQ
Shew_1988
ccoP
Cbb3-type cytochrome c oxidase, subunit III, CcoP
Position: -190
Score: 4
Sequence: TAGTTTGAACTGGATCATCAAA
Locus tag: Shew_0053
Name: SO4503
Funciton: formate dehydrogenase chain D (EC 1.2.1.2)
Locus tag: Shew_0052
Name: SO4502
Funciton: conserved domain protein
Shew_0053
SO4503
formate dehydrogenase chain D (EC 1.2.1.2)
Shew_0052
SO4502
conserved domain protein
Position: -115
Score: 5.1
Sequence: TTATGTGATCTAAGTAACAATT
Locus tag: Shew_2153
Name: hmgR
Funciton: Tyrosine degradation transcriptional regulator, LysR family
Shew_2153
hmgR
Tyrosine degradation transcriptional regulator, LysR family
Position: -301
Score: 4
Sequence: AGATGTTAACTAGCTCCCAAAT
Locus tag: Shew_2389
Name: Spea_1673
Funciton: hypothetical protein
Shew_2389
Spea_1673
hypothetical protein
Position: -207
Score: 4.3
Sequence: TTTTGTGAAGCACAGCAAAGAT
Locus tag: Shew_3181
Name: shew_3181
Funciton: twin-arginine translocation pathway signal precursor
Locus tag: Shew_3182
Name: shew_3182
Funciton: tetraheme cytochrome c
Shew_3181
shew_3181
twin-arginine translocation pathway signal precursor
Shew_3182
shew_3182
tetraheme cytochrome c
Position: -98
Score: 4.4
Sequence: TGTTTTGATCTATCTCACGGTT
Locus tag: Shew_0333
Name: fdrC2
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: Shew_0334
Name: frdA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Shew_0335
Name: frdB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Shew_0333
fdrC2
Fumarate reductase cytochrome b subunit
Shew_0334
frdA
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Shew_0335
frdB
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Position: -76
Score: 4.6
Sequence: AAAGTTGATCTAGATCACGTTT
Locus tag: Shew_1073
Name: yfiA-2
Funciton: Ribosome hibernation protein YfiA
Shew_1073
yfiA-2
Ribosome hibernation protein YfiA
Position: -126
Score: 4.1
Sequence: ATTTGTGACATCGGTAAACTTA
Locus tag: Shew_0678
Name: hemG
Funciton: protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
Locus tag: Shew_0679
Name: SO3719
Funciton: hypothetical protein
Shew_0678
hemG
protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
Shew_0679
SO3719
hypothetical protein
Position: -108
Score: 4.2
Sequence: TTTGTTGATCTTAATCAAAAAA
Locus tag: Shew_3120
Name: Sfri_4035
Funciton: Conserved hypothetical signal peptide protein
Locus tag: Shew_3121
Name: Sfri_4034
Funciton: FMN-binding domain-containing protein
Locus tag: Shew_3122
Name: Sfri_4033
Funciton: PepSY-associated TM helix domain-containing protein
Shew_3120
Sfri_4035
Conserved hypothetical signal peptide protein
Shew_3121
Sfri_4034
FMN-binding domain-containing protein
Shew_3122
Sfri_4033
PepSY-associated TM helix domain-containing protein
Position: -130
Score: 4.4
Sequence: GAGTGTGATTTGTATCACGCTA
Locus tag: Shew_1438
Name: fahA
Funciton: Fumarylacetoacetate hydrolase family protein
Locus tag: Shew_1439
Name: maiA
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
Shew_1438
fahA
Fumarylacetoacetate hydrolase family protein
Shew_1439
maiA
Maleylacetoacetate isomerase (EC 5.2.1.2)
Position: -217
Score: 4
Sequence: AATAGTGATGAGGTTAATATAG
Locus tag: Shew_0671
Name: swp_4060
Funciton: phospholipase A1 precursor (EC 3.1.1.32, EC 3.1.1.4); outer membrane phospholipase A
Shew_0671
swp_4060
phospholipase A1 precursor (EC 3.1.1.32, EC 3.1.1.4); outer membrane phospholipase A
Position: -260
Score: 4.5
Sequence: TTATGTGACAGATATCTCAATC
Position: -170
Score: 5.3
Sequence: CAACGTGATCTAGATCACATAT
Locus tag: Shew_2519
Name: mtrD
Funciton: periplasmic decaheme cytochrome c, MtrD
Locus tag: Shew_2520
Name: mtrE
Funciton: outer membrane protein, MtrE
Locus tag: Shew_2521
Name: mtrF
Funciton: surface localized decaheme cytochrome c lipoprotein, MtrF
Locus tag: Shew_2522
Name: omcA
Funciton: surface localized decaheme cytochrome c lipoprotein, OmcA
Shew_2519
mtrD
periplasmic decaheme cytochrome c, MtrD
Shew_2520
mtrE
outer membrane protein, MtrE
Shew_2521
mtrF
surface localized decaheme cytochrome c lipoprotein, MtrF
Shew_2522
omcA
surface localized decaheme cytochrome c lipoprotein, OmcA
Position: -210
Score: 4.4
Sequence: AACTGTGATCTGTATCACATGG
Locus tag: Shew_1092
Name: SO3541
Funciton: sodium:alanine symporter family protein
Shew_1092
SO3541
sodium:alanine symporter family protein
Position: -117
Score: 3.7
Sequence: AAGCGTTAGCCCACTCACAAAG
Locus tag: Shew_3086
Name: Sama_2599
Funciton: putative lipoprotein
Shew_3086
Sama_2599
putative lipoprotein
Position: -144
Score: 4.1
Sequence: TTGCTTGATATGCTTCACGCTA
Locus tag: Shew_3394
Name: kefA
Funciton: mechanosensitive ion channel
Shew_3394
kefA
mechanosensitive ion channel
Position: -48
Score: 4.1
Sequence: AAAATTGATCTAGATCAATAAA
Locus tag: Shew_2238
Name: null
Funciton: hypothetical protein
Shew_2238
hypothetical protein
Position: -150
Score: 4.1
Sequence: AAATTTGATCTGCGCCACACTC
Locus tag: Shew_3260
Name: omp35
Funciton: outer membrane porin
Shew_3260
omp35
outer membrane porin
Position: -246
Score: 4.1
Sequence: TAGAGTGATCAGCTTCACATCG
Locus tag: Shew_0759
Name: SO0939
Funciton: split-soret diheme cytochrome c
Locus tag: Shew_0758
Name: null
Funciton: hypothetical protein
Shew_0759
SO0939
split-soret diheme cytochrome c
Shew_0758
hypothetical protein
Position: -238
Score: 4
Sequence: AGATGTGATATGGGCAACATTG
Locus tag: Shew_0585
Name: crp
Funciton: Cyclic AMP receptor protein Crp
Shew_0585
crp
Cyclic AMP receptor protein Crp
Position: -182
Score: 4.1
Sequence: AAACATGACATGCTTAACAATT
Locus tag: Shew_0073
Name: SO4520
Funciton: Oxygen-independent coproporphyrinogen III oxidase, putative
Shew_0073
SO4520
Oxygen-independent coproporphyrinogen III oxidase, putative
Position: -286
Score: 3.9
Sequence: AAAATAGATCTTGATCATATTT
Locus tag: Shew_3155
Name: null
Funciton: hypothetical protein
Locus tag: Shew_3156
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: Shew_3157
Name: nrfC
Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Locus tag: Shew_3158
Name: nrfD-2
Funciton: nitrite reductase, quinol dehydrogenase component, NrfD
Shew_3155
hypothetical protein
Shew_3156
nrfB
Cytochrome c-type protein NrfB precursor
Shew_3157
nrfC
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Shew_3158
nrfD-2
nitrite reductase, quinol dehydrogenase component, NrfD
Position: -89
Score: 3.8
Sequence: AACAATGATTCACATCACAACT
Locus tag: Shew_1834
Name: sodB
Funciton: superoxide dismutase [Fe] (EC 1.15.1.1)
Shew_1834
sodB
superoxide dismutase [Fe] (EC 1.15.1.1)
Position: -164
Score: 4.2
Sequence: AGTTGTGATGTGAATCATTGTT
Locus tag: Shew_1835
Name: ydhD
Funciton: Probable monothiol glutaredoxin ydhD
Shew_1835
ydhD
Probable monothiol glutaredoxin ydhD
Position: -179
Score: 3.6
Sequence: TAGAAAGATCTCGGTCACACAT
Locus tag: Shew_2525
Name: mtrC
Funciton: surface localized decaheme cytochrome c lipoprotein, MtrC
Locus tag: Shew_2526
Name: mtrA
Funciton: periplasmic decaheme cytochrome c, MtrA
Locus tag: Shew_2527
Name: mtrB
Funciton: outer membrane protein, MtrB
Shew_2525
mtrC
surface localized decaheme cytochrome c lipoprotein, MtrC
Shew_2526
mtrA
periplasmic decaheme cytochrome c, MtrA
Shew_2527
mtrB
outer membrane protein, MtrB
Position: -162
Score: 4.6
Sequence: TCATTTGACTTAGATCACAAAT
Locus tag: Shew_1036
Name: cyaC
Funciton: Adenylate cyclase (EC 4.6.1.1)
Shew_1036
cyaC
Adenylate cyclase (EC 4.6.1.1)
Position: -247
Score: 4.2
Sequence: ACCAGTGATAGAGATCACACTT
Position: -166
Score: 4.2
Sequence: CATAATGATCTAGATCATATTT
Locus tag: Shew_3135
Name: lldP
Funciton: L-lactate permease
Locus tag: Shew_3136
Name: dldD
Funciton: D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
Shew_3135
lldP
L-lactate permease
Shew_3136
dldD
D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
Position: -216
Score: 4.2
Sequence: CTTTGTGAATTACGTCAAACAA
Locus tag: Shew_0276
Name: SO1414
Funciton: flavocytochrome c flavin subunit
Locus tag: Shew_0275
Name: SO1413
Funciton: flavocytochrome c heme subunit
Shew_0276
SO1414
flavocytochrome c flavin subunit
Shew_0275
SO1413
flavocytochrome c heme subunit
Position: -105
Score: 4.1
Sequence: AAAAGTGACAATGATCCCAAAT
Locus tag: Shew_1516
Name: Swoo_2741
Funciton: Alkyl hydroperoxide reductase subunit C-like protein
Shew_1516
Swoo_2741
Alkyl hydroperoxide reductase subunit C-like protein
Position: -113
Score: 4.1
Sequence: GAAGGTGATCAACATCAAATTT
Locus tag: Shew_0516
Name: SO4142
Funciton: cytochrome c family protein
Locus tag: Shew_0515
Name: SO4143
Funciton: hypothetical protein
Locus tag: Shew_0514
Name: SO4144
Funciton: octaheme tetrathionate reductase
Shew_0516
SO4142
cytochrome c family protein
Shew_0515
SO4143
hypothetical protein
Shew_0514
SO4144
octaheme tetrathionate reductase
Position: -189
Score: 4.4
Sequence: CTTCGTGAGCGGTGTCACATTA
Locus tag: Shew_0087
Name: moaA
Funciton: molybdenum cofactor biosynthesis protein MoaA
Locus tag: Shew_0088
Name: moaB
Funciton: molybdenum cofactor biosynthesis protein MoaB
Locus tag: Shew_0089
Name: moaC
Funciton: molybdenum cofactor biosynthesis protein MoaC
Locus tag: Shew_0090
Name: moaD
Funciton: molybdenum cofactor biosynthesis protein MoaD
Locus tag: Shew_0091
Name: moaE
Funciton: molybdenum cofactor biosynthesis protein MoaE
Locus tag: Shew_0092
Name: modA
Funciton: molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: Shew_0093
Name: modB
Funciton: molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
Locus tag: Shew_0094
Name: modC
Funciton: molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)
Shew_0087
moaA
molybdenum cofactor biosynthesis protein MoaA
Shew_0088
moaB
molybdenum cofactor biosynthesis protein MoaB
Shew_0089
moaC
molybdenum cofactor biosynthesis protein MoaC
Shew_0090
moaD
molybdenum cofactor biosynthesis protein MoaD
Shew_0091
moaE
molybdenum cofactor biosynthesis protein MoaE
Shew_0092
modA
molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Shew_0093
modB
molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
Shew_0094
modC
molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)
Position: -169
Score: 4.2
Sequence: TATTATGAGCAATTTCATAAAA
Locus tag: Shew_3540
Name: cymA
Funciton: membrane anchored tetraheme cytochrome c, CymA
Shew_3540
cymA
membrane anchored tetraheme cytochrome c, CymA
Position: -51
Score: 3.8
Sequence: CCCTGTGACTCGGCTCACCTTT
Locus tag: Shew_1840
Name: SO2871
Funciton: arsenate reductase (EC 1.20.4.1)
Locus tag: Shew_1839
Name: SO2872
Funciton: hypothetical protein
Shew_1840
SO2871
arsenate reductase (EC 1.20.4.1)
Shew_1839
SO2872
hypothetical protein
Position: -47
Score: 4.5
Sequence: AATCTAGATCTATATCACATAA
Locus tag: Shew_0867
Name: mdh
Funciton: malate dehydrogenase (EC 1.1.1.37)
Shew_0867
mdh
malate dehydrogenase (EC 1.1.1.37)
Position: -208
Score: 4.9
Sequence: AAACGTGATCTAGATCAACTTT
Locus tag: Shew_1074
Name: SO3421
Funciton: b-type cytochrome, putative
Shew_1074
SO3421
b-type cytochrome, putative
Position: -70
Score: 5.3
Sequence: AAATGTGATCTACCTTACATTT
Locus tag: Shew_2941
Name: lipB
Funciton: Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase
Locus tag: Shew_2942
Name: lipA
Funciton: Lipoate synthase
Shew_2941
lipB
Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase
Shew_2942
lipA
Lipoate synthase
Position: -274
Score: 3.8
Sequence: AAGCGTGAGACACCTCACCCTG
Position: -242
Score: 4.1
Sequence: ACATTTGACGTCGATCACAAAC
Locus tag: Shew_0331
Name: prmA
Funciton: ribosomal protein L11 methyltransferase (EC 2.1.1.-)
Locus tag: Shew_0330
Name: nifR3
Funciton: tRNA dihydrouridine synthase B (EC 1.-.-.-)
Locus tag: Shew_0329
Name: fis
Funciton: DNA-binding protein Fis
Shew_0331
prmA
ribosomal protein L11 methyltransferase (EC 2.1.1.-)
Shew_0330
nifR3
tRNA dihydrouridine synthase B (EC 1.-.-.-)
Shew_0329
fis
DNA-binding protein Fis
Position: -71
Score: 4.9
Sequence: AATTGTGATTATGGTCATATAA
Locus tag: Shew_2108
Name: fadE2
Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Shew_2108
fadE2
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Position: -276
Score: 3.5
Sequence: ATTTGCGCTTGATTACGCAAAA
Locus tag: Shew_1522
Name: SO2753
Funciton: prolyl endopeptidase (EC 3.4.21.26)
Shew_1522
SO2753
prolyl endopeptidase (EC 3.4.21.26)
Position: -66
Score: 5
Sequence: TAGTGTGATGCAGCTCTCAATA
Locus tag: Shew_1222
Name: Shew_1222
Funciton: hypothetical protein
Shew_1222
Shew_1222
hypothetical protein
Position: -238
Score: 4.6
Sequence: CCATGTGATACAGATCACAGTT
Position: -97
Score: 4
Sequence: AAATAAGATATTGAACACATTT
Locus tag: Shew_1091
Name: phk
Funciton: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Shew_1091
phk
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Position: -193
Score: 3.8
Sequence: CAACATGATAAAACTCACGTAA
Position: -163
Score: 4.2
Sequence: ATTTGCGACACGGATCACACCT
Locus tag: Shew_3252
Name: Shewana3_0734
Funciton: outer membrane porin, putative
Shew_3252
Shewana3_0734
outer membrane porin, putative
Position: -85
Score: 4.3
Sequence: AAACGTGATTTTTATCACACCC
Locus tag: Shew_1590
Name: SO2589
Funciton: isopenicillin N synthase
Shew_1590
SO2589
isopenicillin N synthase
Position: -201
Score: 4.2
Sequence: CCACTTGATCCAGATCACATTT
Locus tag: Shew_3103
Name: SO3683
Funciton: aldehyde dehydrogenase (EC 1.2.1.3); probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68)
Locus tag: Shew_3104
Name: SO3684
Funciton: transcriptional regulator, TetR family
Shew_3103
SO3683
aldehyde dehydrogenase (EC 1.2.1.3); probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68)
Shew_3104
SO3684
transcriptional regulator, TetR family
Position: -148
Score: 4.5
Sequence: TAATGTGACACCGCTCACGAAG
Locus tag: Shew_0086
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Shew_0086
etfD
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Position: -230
Score: 4
Sequence: ATTTGGGATCATTGTCACTTTT
Locus tag: Shew_1515
Name: SO2757
Funciton: Histidine permease YuiF
Shew_1515
SO2757
Histidine permease YuiF
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