Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Bacillus amyloliquefaciens FZB42

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF AcoR Acetoin Acetoin utilization 1 1
TF AdaA DNA alkylation response 1 1
TF AlsR Acetate Acetoin production 2 2
TF AnsR Asparagine Asparagine degradation 2 2
TF AraR Arabinose Arabinose utilization 5 8
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 7 8
TF AseR Arsenite Arsenic resistance 1 1
TF BceR BceS, sensor histidine kinase (bacitracin) Bacitracin resistance 1 1
TF BglR Beta-glucoside-6-phosphate Beta-glucosides utilization 2 2
TF BglZ Beta-glucoside Beta-glucosides utilization 2 2
TF BirA Biotin Biotin biosynthesis 3 4
TF BkdR Branched-chain amino acid degradation 2 3
TF BltR Multidrug resistance 3 1
TF BsdA Salicylate Salicylic acid resistance 2 2
TF Btr Bacillibactin; Fe-Bacillibactin Iron homeostasis 2 1
TF CcpA HPr, phosphocarrier protein Carbon catabolism 85 81
TF CcpC Citrate Citrate metabolism 3 2
TF CcpN Gluconeogenesis 2 2
TF CggR Fructose-1,6-diphosphate Glycolysis 1 1
TF CitR Citrate metabolism 2 2
TF CitT Citrate Citrate utilization 1 1
TF CodY Guanosine triphosphate; Branched-chain amino acids Amino acid metabolism 104 77
TF ComA ComP, sensor histidine kinase (ComX) Competence 7 4
TF CsoR Copper ion, (Cu+) Copper resistance 4 2
TF CssR CssS, sensor histidine kinase Protein secretion stress response 3 6
TF CtsR Heat shock Heat shock response 5 4
TF CymR O-acetyl-L-serine; CysK, cysteine synthetase Cysteine metabolism 12 7
TF CysL Sulfate; Sulfite; Thiosulfate Sulfite reduction 4 4
TF CzrA Zinc ion, (Zn2+); Silver ion, (Ag+); Nickel ion, (Ni2+); Copper ion, (Cu2+); Cobalt ion, (Co2+); Cadmium, ion (Cd2+) Zinc resistance; Nickel resistance; Copper resistance; Cobalt resistance; Cadmium resistance 3 2
TF DctR C4-dicarboxylate transport 1 1
TF DeoR Deoxyribose-5-phosphate Deoxynucleoside utilization 1 2
TF DesR Cold shock response 1 1
TF ExuR Glucuronate; Galacturonate Glucuronate utilization; Galacturonate utilization 2 1
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 6 5
TF FapR Malonyl-CoA Fatty acid biosynthesis 8 5
TF FatR Oleate; Gamma-linolenic acid; Linoleate; Phytanate Toxic fatty acid stress response 1 1
TF Fnr Oxygen Anaerobic metabolism 4 5
TF FrlR Fructoselysine 6-phosphate Fructoselysine utilization 4 6
TF FruR Fructose-6-phosphate Fructose utilization 1 2
TF Fur Iron ion, (Fe2+) Iron homeostasis 24 25
TF GabR Pyridoxal-5-phosphate; Gamma-aminobutyric acid Gamma-aminobutyrate utilization 1 1
TF GbsR (YuaC) Choline Glycine betaine synthesis 1 1
TF GlcR 1 1
TF GlnL GlnK, sensor histidine kinase (glutamine) Aspartate utilization; Glutamine utilization 1 2
TF GlnR Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 4 3
TF GltC Glutamate; 2-oxoglutarate; RocG, glutamate dehydrogenase Glutamate metabolism 2 4
TF GlvR Maltose-6-phosphate Maltose utilization 1 1
TF GmuR Glucomannan utilization 2 1
TF GntR2 D-gluconate Gluconate utilization 3 2
TF GutR Sorbitol Sorbitol utilization 2 2
TF HisR Histidine Histidine biosynthesis 2 2
TF HrcA Heat shock Heat shock response 3 2
TF HxlR Formaldehyde Ribulose monophosphate pathway 1 1
TF IolR 2-deoxy-5-keto-D-gluconate 6-phosphate Inositol utilization 2 3
TF KipR Sporulation 2 1
TF LexA DNA damage SOS response 26 25
TF LiaR LiaS, sensor histidine kinase (bacitracin, nisin, ramoplanin, vancomycin) Cell wall-active antibiotics stress response 1 1
TF LicR HPr, phosphocarrier protein; LicB, lichenan-specific enzyme IIB PTS component Beta-glucosides utilization 2 1
TF LmrA Quercetin; Fisetin; Catechin Multidrug resistance 2 1
TF LutR L-lactate Lactate utilization 3 3
TF LytT Penicillin resistance 1 2
TF MalR MalK, sensor histidine kinase (malate) Malate utilization 2 2
TF ManR ManP, mannose-specific enzyme IIBCA PTS component; HPr, phosphocarrier protein Mannose utilization 2 2
TF MhqR 2-Methylhydroquinone and catechol resistance 6 5
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 1 1
TF MsmR Alpha-galactosides Alpha-galactosides utilization 1 1
TF MtlR MtlA, mannitol-specific enzyme IICB PTS component; HPr, phosphocarrier protein Mannitol utilization 2 2
TF NagR N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 2 2
TF NiaR Niacin NAD biosynthesis 3 3
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 1 2
TF NsrR Nitric oxide Nitrosative stress response 4 3
TF OhrR tert-Butyl hydroperoxide; Diamide; Cumene hydroperoxide; Hydrogen peroxide Peroxide stress response 2 2
TF PadR p-Coumaric acid; Ferulic acid Phenolic acid stress response 2 1
TF PdxQ Pyridoxine/pyridoxal homeostasis 2 2
TF PerR Hydrogen peroxide; Manganese ion, (Mn2+); Iron ion, (Fe2+) Oxidative stress response; Peroxide stress response 13 16
TF PurR 5-phosphoribosyl 1-pyrophosphate Purine metabolism 11 10
TF PutR Proline Proline utilization 1 1
TF QdoR Quercetin; Fisetin; Tamarixetin; Galangin Multidrug resistance 2 1
TF RbsR Ribose Ribose utilization 1 1
TF Rex NADH Energy metabolism 9 7
TF RocR Ornithine; L-citrulline Arginine degradation; Ornithine degradation 4 4
TF ScrR Sucrose Sucrose utilization 2 2
TF SinR SinI, antirepressor protein Biofilm formation 3 3
TF TnrA NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 49 48
TF TreR Trehalose-6-phosphate Trehalose utilization 1 2
TF XylR Xylose Xylose utilization 3 3
TF YbzH Metabolite transport 2 2
TF YcnK Copper ion, (Cu+) Copper homeostasis 1 2
TF YcxD Multidrug efflux 1 1
TF YczG Utilization of aromatic compounds 2 2
TF YdfI Metabolite transport 1 1
TF YetL Flavonoids Flavonoids response 2 2
TF YfmP Metal efflux 1 1
TF YhcF Multidrug resistance; Multidrug efflux 1 1
TF YhdI/YdeL Metabolite transport 1 1
TF YhgD 2 2
TF YisR Metabolite transport 1 1
TF YodB/CatR Diamide; Quinone Oxidative stress response 7 4
TF YrkD Multidrug resistance 4 3
TF YtcD 2 2
TF YtlI L-cystine transporter 2 4
TF YtrA Ramoplanin Ramoplanin resistance 2 1
TF YvbF/YvaV Osmotic stress response 4 4
TF YwbI Cell wall metabolism 2 2
TF YwrC Metal homeostasis 1 1
TF YybA Polyamine homeostasis 4 6
TF YybR/YdeP Multidrug resistance 4 3
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 6 7
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 2 2
RNA Glycine Glycine Glycine metabolism 2 3
RNA L10_leader Ribosome biogenesis 1 1
RNA L13_leader Ribosome biogenesis 1 1
RNA L19_leader Ribosome biogenesis 1 1
RNA L20_leader Ribosome biogenesis 1 1
RNA L21_leader Ribosome biogenesis 1 1
RNA Lysine Lysine Lysine biosynthesis 3 2
RNA PreQ1 Pre-queuosine1 Queuosine biosynthesis 2 1
RNA Purine Adenine; Guanine Purine metabolism 10 5
RNA PyrR PyrR Pyrimidine metabolism 3 3
RNA SAM S-adenosylmethionine Methionine biosynthesis 16 10
RNA T-box(Ala) Ala-tRNA Amino acid metabolism 1 1
RNA T-box(Asn) Asn-tRNA Amino acid metabolism 1 1
RNA T-box(Cys) Cys-tRNA Amino acid metabolism 1 1
RNA T-box(Gly) Gly-tRNA Amino acid metabolism 1 1
RNA T-box(Ile) Ile-tRNA Amino acid metabolism 3 1
RNA T-box(Leu) Leu-tRNA Amino acid metabolism 3 3
RNA T-box(Lys) Lys-tRNA Amino acid metabolism 1 1
RNA T-box(Phe) Phe-tRNA Amino acid metabolism 1 1
RNA T-box(Pro) Pro-tRNA Amino acid metabolism 4 2
RNA T-box(Ser) Ser-tRNA Amino acid metabolism 2 1
RNA T-box(Thr) Thr-tRNA Amino acid metabolism 3 1
RNA T-box(Trp) Trp-tRNA Amino acid metabolism 2 1
RNA T-box(Tyr) Tyr-tRNA Amino acid metabolism 3 1
RNA T-box(Val) Val-tRNA Amino acid metabolism 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 7 6
RNA glmS Glucosamine-6-phosphate Amino sugar metabolism 1 1
RNA ydaO-yuaA Cell wall metabolism; Osmotic stress response 2 1
RNA ykkC-yxkD Multidrug resistance 2 2
RNA ykoK Magnesium ion, (Mg2+) Magnesium homeostasis 1 1
RNA ylbH 1 1
RNA yybP-ykoY 2 1
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