Regulon of CymR in Bacillus amyloliquefaciens FZB42
| Regulator type: | Transcription factor |
| TF locus tag: | RBAM_024630 |
| Regulator family: | Rrf2 |
| Regulation mode: | repressor |
| Biological process: | Cysteine metabolism |
| Effector: | O-acetyl-L-serine; CysK, cysteine synthetase |
| Regulog: | CymR - Bacillales |
| Statistics of regulated genes: | |
| - Genes | 31 |
| - Operons | 7 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By TF family - Rrf2
- By effector - O-acetyl-L-serine
- By effector - CysK, cysteine synthetase
- By pathway - Cysteine metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -49
Score: 5.9 Sequence: TAATCCATACTATACTCATAGGAATTA
Locus tag: RBAM_024380
Name: yrrT Funciton: SAM-dependent methyltransferase
Locus tag: RBAM_024370
Name: mtn Funciton: 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)
Locus tag: RBAM_024360
Name: mccA Funciton: Cystathionine beta-synthase (EC 4.2.1.22)
Locus tag: RBAM_024350
Name: mccB Funciton: Cystathionine gamma-lyase (EC 4.4.1.1)
Locus tag: RBAM_024340
Name: yrhC Funciton: Hypothetical protein |
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yrrT
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SAM-dependent methyltransferase
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mtn
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5'-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)
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mccA
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Cystathionine beta-synthase (EC 4.2.1.22)
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mccB
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Cystathionine gamma-lyase (EC 4.4.1.1)
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yrhC
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Hypothetical protein
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Position: -299
Score: 4.7 Sequence: TTATTCCTATCAAAAAACTCGGGTTGA
Locus tag: RBAM_015400
Name: cysH Funciton: Phosphoadenylyl-sulfate reductase (EC 1.8.4.8)
Locus tag: RBAM_015410
Name: cysP Funciton: Sulfate permease, Pit-type
Locus tag: RBAM_015420
Name: sat Funciton: Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4)
Locus tag: RBAM_015430
Name: cysC Funciton: Adenylylsulfate kinase (EC 2.7.1.25)
Locus tag: RBAM_015440
Name: ylnD Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Locus tag: RBAM_015450
Name: sirB Funciton: Sirohydrochlorin ferrochelatase (EC 4.99.1.4)
Locus tag: RBAM_015460
Name: sirC Funciton: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) |
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cysH
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Phosphoadenylyl-sulfate reductase (EC 1.8.4.8)
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cysP
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Sulfate permease, Pit-type
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sat
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Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4)
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cysC
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Adenylylsulfate kinase (EC 2.7.1.25)
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ylnD
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Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
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sirB
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Sirohydrochlorin ferrochelatase (EC 4.99.1.4)
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sirC
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Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76)
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Position: -82
Score: 6 Sequence: TAATACTTATTAACTTTATCGGAATTA
Locus tag: RBAM_004850
Name: ydbM Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
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ydbM
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Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
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Position: -100
Score: 5.3 Sequence: TAATTCCAATTTGTTTACTAAGCTTTG
Locus tag: RBAM_030860
Name: ytlI Funciton: Transcriptional regulator, LysR family |
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ytlI
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Transcriptional regulator, LysR family
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Position: -85
Score: 6 Sequence: TTATTCTTATAAAATTACTAGGAAATA
Locus tag: RBAM_003900
Name: yxeK Funciton: Putative monooxygenase
Locus tag: RBAM_003910
Name: yxeL Funciton: Putative acetyltransferase
Locus tag: RBAM_003920
Name: yxeM Funciton: Amino acid ABC superfamily ATP binding cassette transporter, binding protein
Locus tag: RBAM_003930
Name: yxeN Funciton: Amino acid ABC superfamily ATP binding cassette transporter, membrane protein
Locus tag: RBAM_003940
Name: yxeO Funciton: Amino acid ABC superfamily ATP binding cassette transporter, ABC protein
Locus tag: RBAM_003950
Name: yxeP Funciton: Uncharacterized hydrolase
Locus tag: RBAM_003960
Name: yxeQ Funciton: Hypothetical protein |
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yxeK
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Putative monooxygenase
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yxeL
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Putative acetyltransferase
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yxeM
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Amino acid ABC superfamily ATP binding cassette transporter, binding protein
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yxeN
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Amino acid ABC superfamily ATP binding cassette transporter, membrane protein
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yxeO
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Amino acid ABC superfamily ATP binding cassette transporter, ABC protein
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yxeP
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Uncharacterized hydrolase
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yxeQ
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Hypothetical protein
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Position: -39
Score: 5.8 Sequence: TAATACCAATAAATTTAGTCGGAAATT
Locus tag: RBAM_000840
Name: cysK Funciton: Cysteine synthase (EC 2.5.1.47) |
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cysK
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Cysteine synthase (EC 2.5.1.47)
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Position: -54
Score: 5.3 Sequence: CAAAGCTTAGTAAACAAATTGGAATTA
Locus tag: RBAM_030850
Name: ytmI Funciton: Putative N-acetyltransferase
Locus tag: RBAM_030840
Name: ytmJ Funciton: Sulfur containing amino acid ABC transporter binding lipoprotein
Locus tag: RBAM_030830
Name: ytmK Funciton: Sulfur-containing amino acid ABC transporter binding lipoprotein
Locus tag: RBAM_030820
Name: ytmL Funciton: Sulfur-containing amino acid ABC transporter (permease)
Locus tag: RBAM_030810
Name: ytmM Funciton: Sulfur-containing amino acid ABC transporter (permease)
Locus tag: RBAM_030800
Name: ytmN Funciton: Sulfur-containing amino-acid ABC transporter (ATP-binding protein)
Locus tag: RBAM_030790
Name: ytmO Funciton: putative monooxygenase
Locus tag: RBAM_030780
Name: ytnI Funciton: glutaredoxin
Locus tag: RBAM_030770
Name: ytnJ Funciton: Putative monooxygenase |
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ytmI
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Putative N-acetyltransferase
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ytmJ
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Sulfur containing amino acid ABC transporter binding lipoprotein
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ytmK
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Sulfur-containing amino acid ABC transporter binding lipoprotein
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ytmL
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Sulfur-containing amino acid ABC transporter (permease)
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ytmM
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Sulfur-containing amino acid ABC transporter (permease)
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ytmN
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Sulfur-containing amino-acid ABC transporter (ATP-binding protein)
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ytmO
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putative monooxygenase
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ytnI
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glutaredoxin
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ytnJ
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Putative monooxygenase
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |