Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of CymR in Bacillus amyloliquefaciens FZB42

Properties
Regulator type: Transcription factor
TF locus tag: RBAM_024630
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Cysteine metabolism
Effector: O-acetyl-L-serine; CysK, cysteine synthetase
Regulog: CymR - Bacillales
Statistics of regulated genes:
- Genes 31
- Operons 7
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 65 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -49
Score: 5.9
Sequence: TAATCCATACTATACTCATAGGAATTA
Locus tag: RBAM_024380
Name: yrrT
Funciton: SAM-dependent methyltransferase
Locus tag: RBAM_024370
Name: mtn
Funciton: 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)
Locus tag: RBAM_024360
Name: mccA
Funciton: Cystathionine beta-synthase (EC 4.2.1.22)
Locus tag: RBAM_024350
Name: mccB
Funciton: Cystathionine gamma-lyase (EC 4.4.1.1)
Locus tag: RBAM_024340
Name: yrhC
Funciton: Hypothetical protein
RBAM_024380
yrrT
SAM-dependent methyltransferase
RBAM_024370
mtn
5'-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)
RBAM_024360
mccA
Cystathionine beta-synthase (EC 4.2.1.22)
RBAM_024350
mccB
Cystathionine gamma-lyase (EC 4.4.1.1)
RBAM_024340
yrhC
Hypothetical protein
Position: -299
Score: 4.7
Sequence: TTATTCCTATCAAAAAACTCGGGTTGA
Locus tag: RBAM_015400
Name: cysH
Funciton: Phosphoadenylyl-sulfate reductase (EC 1.8.4.8)
Locus tag: RBAM_015410
Name: cysP
Funciton: Sulfate permease, Pit-type
Locus tag: RBAM_015420
Name: sat
Funciton: Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4)
Locus tag: RBAM_015430
Name: cysC
Funciton: Adenylylsulfate kinase (EC 2.7.1.25)
Locus tag: RBAM_015440
Name: ylnD
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Locus tag: RBAM_015450
Name: sirB
Funciton: Sirohydrochlorin ferrochelatase (EC 4.99.1.4)
Locus tag: RBAM_015460
Name: sirC
Funciton: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76)
RBAM_015400
cysH
Phosphoadenylyl-sulfate reductase (EC 1.8.4.8)
RBAM_015410
cysP
Sulfate permease, Pit-type
RBAM_015420
sat
Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4)
RBAM_015430
cysC
Adenylylsulfate kinase (EC 2.7.1.25)
RBAM_015440
ylnD
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
RBAM_015450
sirB
Sirohydrochlorin ferrochelatase (EC 4.99.1.4)
RBAM_015460
sirC
Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76)
Position: -82
Score: 6
Sequence: TAATACTTATTAACTTTATCGGAATTA
Locus tag: RBAM_004850
Name: ydbM
Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
RBAM_004850
ydbM
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Position: -100
Score: 5.3
Sequence: TAATTCCAATTTGTTTACTAAGCTTTG
Locus tag: RBAM_030860
Name: ytlI
Funciton: Transcriptional regulator, LysR family
RBAM_030860
ytlI
Transcriptional regulator, LysR family
Position: -85
Score: 6
Sequence: TTATTCTTATAAAATTACTAGGAAATA
Locus tag: RBAM_003900
Name: yxeK
Funciton: Putative monooxygenase
Locus tag: RBAM_003910
Name: yxeL
Funciton: Putative acetyltransferase
Locus tag: RBAM_003920
Name: yxeM
Funciton: Amino acid ABC superfamily ATP binding cassette transporter, binding protein
Locus tag: RBAM_003930
Name: yxeN
Funciton: Amino acid ABC superfamily ATP binding cassette transporter, membrane protein
Locus tag: RBAM_003940
Name: yxeO
Funciton: Amino acid ABC superfamily ATP binding cassette transporter, ABC protein
Locus tag: RBAM_003950
Name: yxeP
Funciton: Uncharacterized hydrolase
Locus tag: RBAM_003960
Name: yxeQ
Funciton: Hypothetical protein
RBAM_003900
yxeK
Putative monooxygenase
RBAM_003910
yxeL
Putative acetyltransferase
RBAM_003920
yxeM
Amino acid ABC superfamily ATP binding cassette transporter, binding protein
RBAM_003930
yxeN
Amino acid ABC superfamily ATP binding cassette transporter, membrane protein
RBAM_003940
yxeO
Amino acid ABC superfamily ATP binding cassette transporter, ABC protein
RBAM_003950
yxeP
Uncharacterized hydrolase
RBAM_003960
yxeQ
Hypothetical protein
Position: -39
Score: 5.8
Sequence: TAATACCAATAAATTTAGTCGGAAATT
Locus tag: RBAM_000840
Name: cysK
Funciton: Cysteine synthase (EC 2.5.1.47)
RBAM_000840
cysK
Cysteine synthase (EC 2.5.1.47)
Position: -54
Score: 5.3
Sequence: CAAAGCTTAGTAAACAAATTGGAATTA
Locus tag: RBAM_030850
Name: ytmI
Funciton: Putative N-acetyltransferase
Locus tag: RBAM_030840
Name: ytmJ
Funciton: Sulfur containing amino acid ABC transporter binding lipoprotein
Locus tag: RBAM_030830
Name: ytmK
Funciton: Sulfur-containing amino acid ABC transporter binding lipoprotein
Locus tag: RBAM_030820
Name: ytmL
Funciton: Sulfur-containing amino acid ABC transporter (permease)
Locus tag: RBAM_030810
Name: ytmM
Funciton: Sulfur-containing amino acid ABC transporter (permease)
Locus tag: RBAM_030800
Name: ytmN
Funciton: Sulfur-containing amino-acid ABC transporter (ATP-binding protein)
Locus tag: RBAM_030790
Name: ytmO
Funciton: putative monooxygenase
Locus tag: RBAM_030780
Name: ytnI
Funciton: glutaredoxin
Locus tag: RBAM_030770
Name: ytnJ
Funciton: Putative monooxygenase
RBAM_030850
ytmI
Putative N-acetyltransferase
RBAM_030840
ytmJ
Sulfur containing amino acid ABC transporter binding lipoprotein
RBAM_030830
ytmK
Sulfur-containing amino acid ABC transporter binding lipoprotein
RBAM_030820
ytmL
Sulfur-containing amino acid ABC transporter (permease)
RBAM_030810
ytmM
Sulfur-containing amino acid ABC transporter (permease)
RBAM_030800
ytmN
Sulfur-containing amino-acid ABC transporter (ATP-binding protein)
RBAM_030790
ytmO
putative monooxygenase
RBAM_030780
ytnI
glutaredoxin
RBAM_030770
ytnJ
Putative monooxygenase
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