Regulog CymR - Bacillales
| Regulator type: | Transcription factor |
| Regulator family: | Rrf2 |
| Regulation mode: | repressor |
| Biological process: | Cysteine metabolism |
| Effector: | O-acetyl-L-serine; CysK, cysteine synthetase |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By TF family - Rrf2
- By effector - O-acetyl-L-serine
- By effector - CysK, cysteine synthetase
- By pathway - Cysteine metabolism
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 32 | 8 |
| Bacillus amyloliquefaciens FZB42 | 31 | 7 |
| Bacillus pumilus SAFR-032 | 14 | 4 |
| Bacillus licheniformis DSM 13 | 11 | 6 |
| Anoxybacillus flavithermus WK1 | 16 | 6 |
| Geobacillus kaustophilus HTA426 | 4 | 3 |
| Bacillus cereus ATCC 14579 | 16 | 6 |
| Bacillus halodurans C-125 | 14 | 5 |
| Bacillus clausii KSM-K16 | 11 | 3 |
| Oceanobacillus iheyensis HTE831 | 13 | 4 |
| Paenibacillus sp. JDR-2 | 29 | 9 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| BH3125 |
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*
Bacillus halodurans C-125 Site: position = -142 score = 4.82737 sequence = TAAAACCCACTTGACAGATGGGGATTA Site: position = -50 score = 4.61818 sequence = TAAAACAGACTTTTCCGATCTGTTTTA Gene: BH3125: Hypothetical protein |
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Hypothetical protein |
| BH3126 |
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Gene: BH3126: Hypothetical protein |
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Gene: Pjdr2_4820: Hypothetical protein |
Hypothetical protein |
| subI |
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*2
Bacillus cereus ATCC 14579 Site: position = -158 score = 5.41883 sequence = AAATTCCAAGTTGACACATATGAATTA Gene: BC1090: Sulfate ABC transporter (sulfate-binding protein) Gene: BC1091: Sulfate ABC transporter (sulfate-binding protein) |
Gene: BH3127: Sulfate ABC transporter (sulfate-binding protein) |
Gene: ABC1226: Sulfate ABC transporter (sulfate-binding protein) |
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*
Paenibacillus sp. JDR-2 Site: position = -96 score = 4.68336 sequence = CATAACCAACTAAACAGGTAGGAATAA Gene: Pjdr2_4823: Sulfate ABC transporter (sulfate-binding protein) |
Sulfate ABC transporter (sulfate-binding protein) |
| cysT |
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Gene: BC1092: Sulfate ABC transporter (permease) |
Gene: BH3128: Sulfate ABC transporter (permease) |
Gene: ABC1227: Sulfate ABC transporter (permease) |
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Gene: Pjdr2_4822: Sulfate ABC transporter (permease) |
Sulfate ABC transporter (permease) |
| cysW |
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Gene: BC1093: Sulfate ABC transporter (permease) |
Gene: BH3129: Sulfate ABC transporter (permease) |
Gene: ABC1228: Sulfate ABC transporter (permease) |
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Gene: Pjdr2_4821: Sulfate ABC transporter (permease) |
Sulfate ABC transporter (permease) |
| cysA |
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Gene: BC1094: Sulfate ABC transporter (ATP-binding protein) |
Gene: BH3130: Sulfate ABC transporter (ATP-binding protein) |
Gene: ABC1229: Sulfate ABC transporter (ATP-binding protein) |
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Sulfate ABC transporter (ATP-binding protein) |
| CRON 2. | ||||||||||||
| cysL |
Gene: BSU37650: Regulator of sulfur assimilation, activates cysJI expression |
Gene: RBAM_034830: Regulator of sulfur assimilation, activates cysJI expression |
Gene: BPUM_3611: Regulator of sulfur assimilation, activates cysJI expression |
*
Bacillus licheniformis DSM 13 Site: position = -242 score = 5.53218 sequence = CTATTCCTATAAATCAAATCGGTTTTA Gene: BLi01300: Regulator of sulfur assimilation, activates cysJI expression |
*
Anoxybacillus flavithermus WK1 Site: position = -112 score = 5.36863 sequence = CTATTCCTATAAATCAAGTATGTTTTA Gene: Aflv_1598: Regulator of sulfur assimilation, activates cysJI expression |
Gene: GK1408: Regulator of sulfur assimilation, activates cysJI expression |
Gene: BC5175: Regulator of sulfur assimilation, activates cysJI expression |
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Gene: OB3407: Regulator of sulfur assimilation, activates cysJI expression |
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Regulator of sulfur assimilation, activates cysJI expression |
| CRON 3. | ||||||||||||
| ytlI |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -125 score = 5.65003 sequence = TAATTCCTATTTGTTTACTAAGCTTTT Gene: BSU29400: Transcriptional regulator, LysR family |
*
Bacillus amyloliquefaciens FZB42 Site: position = -100 score = 5.2597 sequence = TAATTCCAATTTGTTTACTAAGCTTTG Gene: RBAM_030860: Transcriptional regulator, LysR family |
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Transcriptional regulator, LysR family |
| CRON 4. | ||||||||||||
| cysH |
2
Bacillus subtilis subsp. subtilis str. 168 Gene: BSU10930: Phosphoadenylyl-sulfate reductase (EC 1.8.4.8) Gene: BSU15570: Phosphoadenylyl-sulfate reductase (EC 1.8.4.8) |
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Bacillus amyloliquefaciens FZB42 Site: position = -299 score = 4.73721 sequence = TTATTCCTATCAAAAAACTCGGGTTGA Gene: RBAM_015400: Phosphoadenylyl-sulfate reductase (EC 1.8.4.8) |
Gene: BPUM_1456: Phosphoadenylyl-sulfate reductase (EC 1.8.4.8) |
2
Bacillus licheniformis DSM 13 Gene: BLi02154: Phosphoadenylyl-sulfate reductase (EC 1.8.4.8) Gene: BLi01778: Phosphoadenylyl-sulfate reductase (EC 1.8.4.8) |
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Anoxybacillus flavithermus WK1 Site: position = -100 score = 5.07787 sequence = AAATTCCGATAGAAAAACTAGGATTGA Gene: Aflv_0316: Phosphoadenylyl-sulfate reductase (EC 1.8.4.8) |
Gene: GK0416: Phosphoadenylyl-sulfate reductase (EC 1.8.4.8) |
Gene: BC1421: Phosphoadenylyl-sulfate reductase (EC 1.8.4.8) |
Gene: BH1486: Phosphoadenylyl-sulfate reductase (EC 1.8.4.8) |
Gene: ABC0611: Phosphoadenylyl-sulfate reductase (EC 1.8.4.8) |
*
Oceanobacillus iheyensis HTE831 Site: position = -98 score = 5.43421 sequence = CAATTCACATTGTATTACTATGAATTA Gene: OB1652: Phosphoadenylyl-sulfate reductase (EC 1.8.4.8) |
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Paenibacillus sp. JDR-2 Site: position = -45 score = 5.22009 sequence = AATAGCATATGAATTTACTTGGAATTA Gene: Pjdr2_5647: Phosphoadenylyl-sulfate reductase (EC 1.8.4.8) |
Phosphoadenylyl-sulfate reductase (EC 1.8.4.8) |
| cysJ |
Gene: BSU33440: Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2) |
Gene: RBAM_030610: Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2) |
Gene: BPUM_1777: Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2) |
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Bacillus licheniformis DSM 13 Site: position = -105 score = 5.53218 sequence = TAAAACCGATTTGATTTATAGGAATAG Gene: BLi01302: Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2) |
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Anoxybacillus flavithermus WK1 Site: position = -48 score = 5.36863 sequence = TAAAACATACTTGATTTATAGGAATAG Gene: Aflv_1597: Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2) |
Gene: GK1409: Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2) |
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*
Bacillus halodurans C-125 Site: position = -87 score = 5.69493 sequence = TAAAACCAATTTGACTTATCGGAATAA Gene: BH0609: Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2) |
Gene: ABC0618: Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2) |
Gene: OB1653: Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2) |
Gene: Pjdr2_1786: Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2) |
Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2) |
| yvgQ |
Gene: BSU33430: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) |
Gene: RBAM_030600: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) |
Gene: BPUM_1778: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) |
Gene: BLi01303: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) |
Gene: Aflv_1596: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) |
Gene: GK1410: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) |
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Gene: BH0610: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) |
Gene: ABC0619: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) |
Gene: OB1654: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) |
Gene: Pjdr2_1787: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) |
Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) |
| ylnD |
Gene: BSU15610: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
Gene: RBAM_015440: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
Gene: BPUM_1460: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
Gene: BLi01782: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
Gene: Aflv_0312: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
Gene: GK0413: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
Gene: BC1426: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
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Gene: OB1655: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
Gene: Pjdr2_5914: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
| sirB |
Gene: BSU15620: Sirohydrochlorin ferrochelatase (EC 4.99.1.4) |
Gene: RBAM_015450: Sirohydrochlorin ferrochelatase (EC 4.99.1.4) |
Gene: BPUM_1461: Sirohydrochlorin ferrochelatase (EC 4.99.1.4) |
Gene: BLi01783: Sirohydrochlorin ferrochelatase (EC 4.99.1.4) |
Gene: Aflv_0311: Sirohydrochlorin ferrochelatase (EC 4.99.1.4) |
Gene: GK0412: Sirohydrochlorin ferrochelatase (EC 4.99.1.4) |
Gene: BC1427: Sirohydrochlorin ferrochelatase (EC 4.99.1.4) |
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Gene: ABC0616: Sirohydrochlorin ferrochelatase (EC 4.99.1.4) |
Gene: OB1656: Sirohydrochlorin ferrochelatase (EC 4.99.1.4) |
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Sirohydrochlorin ferrochelatase (EC 4.99.1.4) |
| sirC |
Gene: BSU15630: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) |
Gene: RBAM_015460: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) |
Gene: BPUM_1462: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) |
Gene: BLi01784: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) |
Gene: Aflv_0310: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) |
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Gene: BC1428: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) |
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Gene: ABC0617: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) |
Gene: OB1657: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) |
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Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) |
| yjjA |
Gene: BSU12230: Uroporphyrinogen-III synthase (EC 4.2.1.75) |
Gene: RBAM_012310: Uroporphyrinogen-III synthase (EC 4.2.1.75) |
Gene: BPUM_1801: Uroporphyrinogen-III synthase (EC 4.2.1.75) |
Gene: BLi02842: Uroporphyrinogen-III synthase (EC 4.2.1.75) |
Gene: Aflv_1473: Uroporphyrinogen-III synthase (EC 4.2.1.75) |
Gene: GK1829: Uroporphyrinogen-III synthase (EC 4.2.1.75) |
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Gene: BH2162: Uroporphyrinogen-III synthase (EC 4.2.1.75) |
Gene: ABC3411: Uroporphyrinogen-III synthase (EC 4.2.1.75) |
Gene: OB1658: Uroporphyrinogen-III synthase (EC 4.2.1.75) |
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Uroporphyrinogen-III synthase (EC 4.2.1.75) |
| sat |
2
Bacillus subtilis subsp. subtilis str. 168 Gene: BSU10920: Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4) Gene: BSU15590: Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4) |
Gene: RBAM_015420: Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4) |
Gene: BPUM_1458: Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4) |
Gene: BLi01780: Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4) |
*
Anoxybacillus flavithermus WK1 Site: position = -48 score = 5.61859 sequence = TTAATCCTAGTTGTTTTATAAGAATAA Gene: Aflv_0314: Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4) |
Gene: GK0415: Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4) |
Gene: BC1422: Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4) |
2
Bacillus halodurans C-125 Gene: BH1487: Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4) Gene: BH3386: Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4) |
*
Bacillus clausii KSM-K16 Site: position = -265 score = 4.85026 sequence = AAATACCGAGTTTGTTAATCAGGATAA Gene: ABC0612: Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4) |
Gene: OB1659: Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4) |
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Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4) |
| BH3384 |
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Gene: BH3384: Sodium/sulfate symporter |
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Gene: OB1660: Sodium/sulfate symporter |
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Sodium/sulfate symporter |
| cysC |
2
Bacillus subtilis subsp. subtilis str. 168 Gene: BSU10910: Adenylylsulfate kinase (EC 2.7.1.25) Gene: BSU15600: Adenylylsulfate kinase (EC 2.7.1.25) |
Gene: RBAM_015430: Adenylylsulfate kinase (EC 2.7.1.25) |
Gene: BPUM_1459: Adenylylsulfate kinase (EC 2.7.1.25) |
Gene: BLi01781: Adenylylsulfate kinase (EC 2.7.1.25) |
Gene: Aflv_0313: Adenylylsulfate kinase (EC 2.7.1.25) |
Gene: GK0414: Adenylylsulfate kinase (EC 2.7.1.25) |
Gene: BC1423: Adenylylsulfate kinase (EC 2.7.1.25) |
*
Bacillus halodurans C-125 Site: position = -53 score = 5.27852 sequence = TAAAACATAGTAAACAGATATGAATTT Gene: BH1489: Adenylylsulfate kinase (EC 2.7.1.25) |
Gene: ABC0614: Adenylylsulfate kinase (EC 2.7.1.25) |
Gene: OB1661: Adenylylsulfate kinase (EC 2.7.1.25) |
Gene: Pjdr2_4461: Adenylylsulfate kinase (EC 2.7.1.25) |
Adenylylsulfate kinase (EC 2.7.1.25) |
| cysP |
Gene: BSU15580: Sulfate permease, Pit-type |
Gene: RBAM_015410: Sulfate permease, Pit-type |
Gene: BPUM_1457: Sulfate permease, Pit-type |
2
Bacillus licheniformis DSM 13 Gene: BLi02153: Sulfate permease, Pit-type Gene: BLi01779: Sulfate permease, Pit-type |
Gene: Aflv_0315: Sulfate permease, Pit-type |
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Gene: BH1488: Sulfate permease, Pit-type |
Gene: ABC0613: Sulfate permease, Pit-type |
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Sulfate permease, Pit-type |
| ABC0615 |
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Gene: ABC0615: uroporphyrin-III C-methyltransferase |
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uroporphyrin-III C-methyltransferase |
| BH1485 |
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*
Bacillus halodurans C-125 Site: position = -73 score = 5.27152 sequence = TAAATCATATCAAATTACATGGAATTA Gene: BH1485: Hypothetical protein |
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Hypothetical protein |
| CRON 5. | ||||||||||||
| yhcL |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -73 score = 5.21241 sequence = TAATTCGCACTTGACCCATCGGAATTA Gene: BSU09130: Sodium-cystine symporter |
Gene: RBAM_009400: Sodium-cystine symporter |
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Bacillus licheniformis DSM 13 Site: position = -77 score = 5.11208 sequence = TAATTCCTACTTGACCAATCAGGTTTG Gene: BLi00975: Sodium-cystine symporter |
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*
Bacillus cereus ATCC 14579 Site: position = -72 score = 5.47487 sequence = AATTTCATAGTTGACTTATAGGTTTTA Site: position = -39 score = 4.7783 sequence = TATATTCTATATAACAGATTGGAATTA Gene: BC4242: Sodium-cystine symporter |
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Bacillus clausii KSM-K16 Site: position = -78 score = 5.24382 sequence = TAATTCCCACTTGACTCATATGATTAT Gene: ABC2897: Sodium-cystine symporter |
*
Oceanobacillus iheyensis HTE831 Site: position = -56 score = 6.21503 sequence = TAATTCGTAGTAAATTAATTGGAATTA Gene: OB2714: Sodium-cystine symporter |
*
Paenibacillus sp. JDR-2 Site: position = -148 score = 5.11822 sequence = AATTCCCCATAGAAATAGTCGGATTTA Site: position = -41 score = 4.96353 sequence = TAATTCCAATCAAACAACTTGGATTAG Gene: Pjdr2_6037: Sodium-cystine symporter |
Sodium-cystine symporter |
| CRON 6. | ||||||||||||
| ydbM |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -45 score = 6.36733 sequence = TAATACATATTAAATTTATCGGAATTA Gene: BSU04520: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
*
Bacillus amyloliquefaciens FZB42 Site: position = -82 score = 6.00118 sequence = TAATACTTATTAACTTTATCGGAATTA Gene: RBAM_004850: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
*
Bacillus pumilus SAFR-032 Site: position = -89 score = 5.50323 sequence = TAAATCCTATAAGTAAAGTGTGTTTTA Site: position = -61 score = 4.86834 sequence = TTATTCCGATTGGAAAAATCAGATATG Gene: BPUM_2341: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
*
Bacillus licheniformis DSM 13 Site: position = -45 score = 5.86902 sequence = TAATACTTATTAAATCTATCGGAATTT Gene: BLi00540: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
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Gene: GK1741: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
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Gene: BH2178: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: ABC2099: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
*
Oceanobacillus iheyensis HTE831 Site: position = -45 score = 5.49706 sequence = TTATACCTATTGACTTACTAGGCATTA Gene: OB0293: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: Pjdr2_1875: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
| CRON 7. | ||||||||||||
| ytmI |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -54 score = 5.65003 sequence = AAAAGCTTAGTAAACAAATAGGAATTA Gene: BSU29390: Putative N-acetyltransferase |
*
Bacillus amyloliquefaciens FZB42 Site: position = -54 score = 5.2597 sequence = CAAAGCTTAGTAAACAAATTGGAATTA Gene: RBAM_030850: Putative N-acetyltransferase |
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*
Paenibacillus sp. JDR-2 Site: position = -55 score = 6.12095 sequence = TAATTCTTAGTAAGTTTATAGGAATTA Gene: Pjdr2_5233: Putative N-acetyltransferase |
Putative N-acetyltransferase |
| ytmJ |
Gene: BSU29380: Sulfur containing amino acid ABC transporter binding lipoprotein |
Gene: RBAM_030840: Sulfur containing amino acid ABC transporter binding lipoprotein |
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Sulfur containing amino acid ABC transporter binding lipoprotein |
| ytmK |
Gene: BSU29370: Sulfur-containing amino acid ABC transporter binding lipoprotein |
Gene: RBAM_030830: Sulfur-containing amino acid ABC transporter binding lipoprotein |
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Sulfur-containing amino acid ABC transporter binding lipoprotein |
| ytmL |
Gene: BSU29360: Sulfur-containing amino acid ABC transporter (permease) |
Gene: RBAM_030820: Sulfur-containing amino acid ABC transporter (permease) |
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Gene: Pjdr2_5231: Sulfur-containing amino acid ABC transporter (permease) |
Sulfur-containing amino acid ABC transporter (permease) |
| ytmM |
Gene: BSU29350: Sulfur-containing amino acid ABC transporter (permease) |
Gene: RBAM_030810: Sulfur-containing amino acid ABC transporter (permease) |
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Gene: Pjdr2_5230: Sulfur-containing amino acid ABC transporter (permease) |
Sulfur-containing amino acid ABC transporter (permease) |
| ytmN |
Gene: BSU29340: Sulfur-containing amino-acid ABC transporter (ATP-binding protein) |
Gene: RBAM_030800: Sulfur-containing amino-acid ABC transporter (ATP-binding protein) |
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Gene: Pjdr2_5229: Sulfur-containing amino-acid ABC transporter (ATP-binding protein) |
Sulfur-containing amino-acid ABC transporter (ATP-binding protein) |
| ytmO |
Gene: BSU29330: putative monooxygenase |
Gene: RBAM_030790: putative monooxygenase |
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putative monooxygenase |
| ytnI |
Gene: BSU29320: glutaredoxin |
Gene: RBAM_030780: glutaredoxin |
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glutaredoxin |
| ytnJ |
Gene: BSU29310: Putative monooxygenase |
Gene: RBAM_030770: Putative monooxygenase |
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Putative monooxygenase |
| rbfK |
Gene: BSU29300: RNA-binding riboflavin kinase |
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RNA-binding riboflavin kinase |
| ytnL |
Gene: BSU29290: Putative aminohydrolase |
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Gene: Pjdr2_5227: Putative aminohydrolase |
Putative aminohydrolase |
| ytnM |
Gene: BSU29280: Hypothetical protein |
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Gene: BLi02823: Hypothetical protein |
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*
Geobacillus kaustophilus HTA426 Site: position = -80 score = 5.24574 sequence = AAATTCATAGTTGACATCTATGAATAA Gene: GK1638: Hypothetical protein |
*
Bacillus cereus ATCC 14579 Site: position = -136 score = 5.39691 sequence = TAAAACCTAGTTGATTTATACGATTAA Gene: BC3050: Hypothetical protein |
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Hypothetical protein |
| Pjdr2_5232 |
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Gene: Pjdr2_5232: Extracellular solute-binding protein family 3 |
Extracellular solute-binding protein family 3 |
| Pjdr2_5228 |
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Gene: Pjdr2_5228: Luciferase-like monooxygenase |
Luciferase-like monooxygenase |
| Pjdr2_5226 |
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Gene: Pjdr2_5226: Hypothetical protein |
Hypothetical protein |
| Pjdr2_5225 |
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Gene: Pjdr2_5225: Nitrilotriacetate monooxygenase protein component A |
Nitrilotriacetate monooxygenase protein component A |
| ABC0022 |
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Gene: Pjdr2_5224: N-acyl-L-amino acid amidohydrolase |
N-acyl-L-amino acid amidohydrolase |
| CRON 8. | ||||||||||||
| cysK |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -39 score = 5.35628 sequence = TAATACCAATACAAATAGTCGGAAATT Gene: BSU00730: Cysteine synthase (EC 2.5.1.47) |
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Bacillus amyloliquefaciens FZB42 Site: position = -39 score = 5.79217 sequence = TAATACCAATAAATTTAGTCGGAAATT Gene: RBAM_000840: Cysteine synthase (EC 2.5.1.47) |
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Bacillus pumilus SAFR-032 Site: position = -40 score = 4.62709 sequence = TtAaTaCaATaAAATTAcTcGGAgaTA Gene: BPUM_0057: Cysteine synthase (EC 2.5.1.47) |
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Bacillus licheniformis DSM 13 Site: position = -38 score = 5.6362 sequence = TAATCCCAATAAAATTACTCGGAAATT Gene: BLi00089: Cysteine synthase (EC 2.5.1.47) |
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Anoxybacillus flavithermus WK1 Site: position = -30 score = 5.04656 sequence = CAAATTCTATAAAAATACTCGGGATTA Gene: Aflv_0065: Cysteine synthase (EC 2.5.1.47) |
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Geobacillus kaustophilus HTA426 Site: position = -38 score = 4.71829 sequence = CAAAGTCGATAAAATTAATGGGGATTA Gene: GK0065: Cysteine synthase (EC 2.5.1.47) |
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Bacillus cereus ATCC 14579 Site: position = -39 score = 5.27667 sequence = TAAAACCAATAAAAATACTCGGTGTTA Gene: BC0075: Cysteine synthase (EC 2.5.1.47) |
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Bacillus halodurans C-125 Site: position = -39 score = 5.1753 sequence = GAAAACCAATAAATTTACTTGGGATTA Gene: BH0088: Cysteine synthase (EC 2.5.1.47) |
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Bacillus clausii KSM-K16 Site: position = -42 score = 4.91674 sequence = TAAAACCAATGAAGATACTAGGGATTG Gene: ABC0109: Cysteine synthase (EC 2.5.1.47) |
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Oceanobacillus iheyensis HTE831 Site: position = -41 score = 6.0218 sequence = TAAATCTTATAAAAATACTTGGAATTA Gene: OB0084: Cysteine synthase (EC 2.5.1.47) |
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Paenibacillus sp. JDR-2 Site: position = -44 score = 5.67061 sequence = AAAAACCAACTAAATTAGTCGGAATAA Gene: Pjdr2_0074: Cysteine synthase (EC 2.5.1.47) |
Cysteine synthase (EC 2.5.1.47) |
| CRON 9. | ||||||||||||
| yrrT |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -49 score = 6.07655 sequence = TAATCCATAGTATACTTATAGGAATTA Gene: BSU27280: SAM-dependent methyltransferase |
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Bacillus amyloliquefaciens FZB42 Site: position = -49 score = 5.93116 sequence = TAATCCATACTATACTCATAGGAATTA Gene: RBAM_024380: SAM-dependent methyltransferase |
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Bacillus pumilus SAFR-032 Site: position = -51 score = 5.35907 sequence = TAAAACATACTATACGCATAGGAATAA Gene: BPUM_2363: SAM-dependent methyltransferase |
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Bacillus licheniformis DSM 13 Site: position = -54 score = 5.84545 sequence = TAAATCATACTATACTTATAGGAATTG Gene: BLi02856: SAM-dependent methyltransferase |
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Anoxybacillus flavithermus WK1 Site: position = -36 score = 6.37924 sequence = TAATTCATACTATACTTATAGGAATTA Gene: Aflv_0758: SAM-dependent methyltransferase |
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Geobacillus kaustophilus HTA426 Site: position = -51 score = 5.94273 sequence = AAAAACATACTATATTTATAGGAATTA Gene: GK2543: SAM-dependent methyltransferase |
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Bacillus cereus ATCC 14579 Site: position = -29 score = 5.11772 sequence = TAAAACCGATAAGAAAAAGGGGAATTT Gene: BC4369: SAM-dependent methyltransferase |
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Gene: OB1106: SAM-dependent methyltransferase |
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Paenibacillus sp. JDR-2 Site: position = -105 score = 5.16937 sequence = TAAATCCGATTAATAAGGTTGGAAAAA Gene: Pjdr2_5106: SAM-dependent methyltransferase |
SAM-dependent methyltransferase |
| mtn |
Gene: BSU27270: 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) |
Gene: RBAM_024370: 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) |
Gene: BPUM_2362: 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) |
Gene: BLi02855: 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) |
Gene: Aflv_0759: 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) |
Gene: GK2542: 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) |
Gene: BC4368: 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) |
Gene: BH1279: 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) |
Gene: ABC1603: 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) |
Gene: OB2000: 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) |
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5'-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) |
| mccA |
Gene: BSU27260: Cystathionine beta-synthase (EC 4.2.1.22) |
Gene: RBAM_024360: Cystathionine beta-synthase (EC 4.2.1.22) |
Gene: BPUM_2361: Cystathionine beta-synthase (EC 4.2.1.22) |
Gene: BLi02854: Cystathionine beta-synthase (EC 4.2.1.22) |
Gene: Aflv_0760: Cystathionine beta-synthase (EC 4.2.1.22) |
Gene: GK2541: Cystathionine beta-synthase (EC 4.2.1.22) |
Gene: BC4367: Cystathionine beta-synthase (EC 4.2.1.22) |
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Gene: ABC1944: Cystathionine beta-synthase (EC 4.2.1.22) |
Gene: OB1108: Cystathionine beta-synthase (EC 4.2.1.22) |
Gene: Pjdr2_5105: Cystathionine beta-synthase (EC 4.2.1.22) |
Cystathionine beta-synthase (EC 4.2.1.22) |
| mccB |
Gene: BSU27250: Cystathionine gamma-lyase (EC 4.4.1.1) |
Gene: RBAM_024350: Cystathionine gamma-lyase (EC 4.4.1.1) |
Gene: BPUM_2360: Cystathionine gamma-lyase (EC 4.4.1.1) |
Gene: BLi02853: Cystathionine gamma-lyase (EC 4.4.1.1) |
Gene: Aflv_0761: Cystathionine gamma-lyase (EC 4.4.1.1) |
Gene: GK2540: Cystathionine gamma-lyase (EC 4.4.1.1) |
Gene: BC4366: Cystathionine gamma-lyase (EC 4.4.1.1) |
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Gene: ABC1945: Cystathionine gamma-lyase (EC 4.4.1.1) |
Gene: OB1109: Cystathionine gamma-lyase (EC 4.4.1.1) |
Gene: Pjdr2_5104: Cystathionine gamma-lyase (EC 4.4.1.1) |
Cystathionine gamma-lyase (EC 4.4.1.1) |
| yrhC |
Gene: BSU27240: Hypothetical protein |
Gene: RBAM_024340: Hypothetical protein |
Gene: BPUM_2359: Hypothetical protein |
Gene: BLi02852: Hypothetical protein |
Gene: Aflv_0762: Hypothetical protein |
Gene: GK2539: Hypothetical protein |
Gene: BC4364: Hypothetical protein |
Gene: BH1280: Hypothetical protein |
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Hypothetical protein |
| CRON 10. | ||||||||||||
| yxeK |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -82 score = 5.58547 sequence = TTATTCATATTAAACGACTAGGAATAT Gene: BSU39520: Putative monooxygenase |
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Bacillus amyloliquefaciens FZB42 Site: position = -85 score = 5.98937 sequence = TTATTCTTATAAAATTACTAGGAAATA Gene: RBAM_003900: Putative monooxygenase |
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Bacillus pumilus SAFR-032 Site: position = -84 score = 5.46652 sequence = TAAAACCGATTAATTCAATCAGAAAAA Gene: BPUM_0345: Putative monooxygenase |
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Gene: Pjdr2_6183: Putative monooxygenase |
Putative monooxygenase |
| yxeL |
Gene: BSU39510: Putative acetyltransferase |
Gene: RBAM_003910: Putative acetyltransferase |
Gene: BPUM_0346: Putative acetyltransferase |
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Putative acetyltransferase |
| yxeM |
Gene: BSU39500: Amino acid ABC superfamily ATP binding cassette transporter, binding protein |
Gene: RBAM_003920: Amino acid ABC superfamily ATP binding cassette transporter, binding protein |
Gene: BPUM_0347: Amino acid ABC superfamily ATP binding cassette transporter, binding protein |
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Amino acid ABC superfamily ATP binding cassette transporter, binding protein |
| yxeN |
Gene: BSU39490: Amino acid ABC superfamily ATP binding cassette transporter, membrane protein |
Gene: RBAM_003930: Amino acid ABC superfamily ATP binding cassette transporter, membrane protein |
Gene: BPUM_0348: Amino acid ABC superfamily ATP binding cassette transporter, membrane protein |
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Amino acid ABC superfamily ATP binding cassette transporter, membrane protein |
| yxeO |
Gene: BSU39480: Amino acid ABC superfamily ATP binding cassette transporter, ABC protein |
Gene: RBAM_003940: Amino acid ABC superfamily ATP binding cassette transporter, ABC protein |
Gene: BPUM_0349: Amino acid ABC superfamily ATP binding cassette transporter, ABC protein |
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Amino acid ABC superfamily ATP binding cassette transporter, ABC protein |
| yxeP |
Gene: BSU39470: Uncharacterized hydrolase |
Gene: RBAM_003950: Uncharacterized hydrolase |
Gene: BPUM_0350: Uncharacterized hydrolase |
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Gene: BC3664: Uncharacterized hydrolase |
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Uncharacterized hydrolase |
| yxeQ |
Gene: BSU39460: Hypothetical protein |
Gene: RBAM_003960: Hypothetical protein |
Gene: BPUM_0351: Hypothetical protein |
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Hypothetical protein |
| ssuB |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -167 score = 4.64659 sequence = TAAAAAAGAGTTGACATATCGGAATAA Gene: BSU08830: Aliphatic sulfonate ABC transporter (ATP-binding protein) |
Gene: RBAM_009110: Aliphatic sulfonate ABC transporter (ATP-binding protein) |
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Gene: BLi00941: Aliphatic sulfonate ABC transporter (ATP-binding protein) |
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Bacillus cereus ATCC 14579 Site: position = -174 score = 5.71562 sequence = TAAAACCTAGTTGACTTATCGGAAATA Gene: BC2912: Aliphatic sulfonate ABC transporter (ATP-binding protein) |
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*2
Paenibacillus sp. JDR-2 Site: position = -53 score = 4.90494 sequence = TAATTCCAAGTAAATCGGTGTGAAAAA Gene: Pjdr2_6187: Aliphatic sulfonate ABC transporter (ATP-binding protein) Site: position = -70 score = 5.28036 sequence = TAATTCCAACTATTCCAATAAGGAAAA Gene: Pjdr2_0756: Aliphatic sulfonate ABC transporter (ATP-binding protein) |
Aliphatic sulfonate ABC transporter (ATP-binding protein) |
| ssuA |
Gene: BSU08840: Aliphatic sulfonate ABC transporter (binding lipoprotein) |
Gene: RBAM_009120: Aliphatic sulfonate ABC transporter (binding lipoprotein) |
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Gene: BLi00942: Aliphatic sulfonate ABC transporter (binding lipoprotein) |
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Gene: BC2911: Aliphatic sulfonate ABC transporter (binding lipoprotein) |
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*2
Paenibacillus sp. JDR-2 Gene: Pjdr2_6186: Aliphatic sulfonate ABC transporter (binding lipoprotein) Site: position = -50 score = 5.2029 sequence = TAAATCCGATTAAACAAATAAGTAAAG Gene: Pjdr2_0760: Aliphatic sulfonate ABC transporter (binding lipoprotein) |
Aliphatic sulfonate ABC transporter (binding lipoprotein) |
| ssuC |
Gene: BSU08850: aliphatic sulfonate ABC transporter (permease) |
Gene: RBAM_009130: aliphatic sulfonate ABC transporter (permease) |
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Gene: BLi00943: aliphatic sulfonate ABC transporter (permease) |
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2
Paenibacillus sp. JDR-2 Gene: Pjdr2_6185: aliphatic sulfonate ABC transporter (permease) Gene: Pjdr2_6184: aliphatic sulfonate ABC transporter (permease) |
aliphatic sulfonate ABC transporter (permease) |
| ssuD |
Gene: BSU08860: Alkanesulfonate monooxygenase (EC 1.14.14.5) |
Gene: RBAM_009140: Alkanesulfonate monooxygenase (EC 1.14.14.5) |
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Gene: BLi00944: Alkanesulfonate monooxygenase (EC 1.14.14.5) |
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Alkanesulfonate monooxygenase (EC 1.14.14.5) |
| BC2910 |
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Gene: BC2910: Alkanesulfonates transport system permease protein |
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Alkanesulfonates transport system permease protein |
| BC2909 |
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Gene: BC2909: Alkanesulfonate monooxygenase |
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Alkanesulfonate monooxygenase |
| Pjdr2_0761 |
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Gene: Pjdr2_0761: Taurine dioxygenase |
Taurine dioxygenase |
| Pjdr2_0762 |
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Gene: Pjdr2_0762: Stress responsive alpha-beta barrel domain protein |
Stress responsive alpha-beta barrel domain protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |