Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of CymR in Paenibacillus sp. JDR-2

Properties
Regulator type: Transcription factor
TF locus tag: Pjdr2_4358
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Cysteine metabolism
Effector: O-acetyl-L-serine; CysK, cysteine synthetase
Regulog: CymR - Bacillales
Statistics of regulated genes:
- Genes 29
- Operons 9
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 65 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -45
Score: 5.2
Sequence: AATAGCATATGAATTTACTTGGAATTA
Locus tag: Pjdr2_5647
Name: cysH
Funciton: Phosphoadenylyl-sulfate reductase (EC 1.8.4.8)
cysH
Phosphoadenylyl-sulfate reductase (EC 1.8.4.8)

Position: -55
Score: 6.1
Sequence: TAATTCTTAGTAAGTTTATAGGAATTA
Locus tag: Pjdr2_5233
Name: ytmI
Funciton: Putative N-acetyltransferase
Locus tag: Pjdr2_5232
Name: null
Funciton: Extracellular solute-binding protein family 3
Locus tag: Pjdr2_5231
Name: ytmL
Funciton: Sulfur-containing amino acid ABC transporter (permease)
Locus tag: Pjdr2_5230
Name: ytmM
Funciton: Sulfur-containing amino acid ABC transporter (permease)
Locus tag: Pjdr2_5229
Name: ytmN
Funciton: Sulfur-containing amino-acid ABC transporter (ATP-binding protein)
Locus tag: Pjdr2_5228
Name: null
Funciton: Luciferase-like monooxygenase
Locus tag: Pjdr2_5227
Name: ytnL
Funciton: Putative aminohydrolase
Locus tag: Pjdr2_5226
Name: null
Funciton: Hypothetical protein
Locus tag: Pjdr2_5225
Name: null
Funciton: Nitrilotriacetate monooxygenase protein component A
Locus tag: Pjdr2_5224
Name: null
Funciton: N-acyl-L-amino acid amidohydrolase
ytmI
Putative N-acetyltransferase
Extracellular solute-binding protein family 3
ytmL
Sulfur-containing amino acid ABC transporter (permease)
ytmM
Sulfur-containing amino acid ABC transporter (permease)
ytmN
Sulfur-containing amino-acid ABC transporter (ATP-binding protein)
Luciferase-like monooxygenase
ytnL
Putative aminohydrolase
Hypothetical protein
Nitrilotriacetate monooxygenase protein component A
N-acyl-L-amino acid amidohydrolase

Position: -148
Score: 5.1
Sequence: AATTCCCCATAGAAATAGTCGGATTTA
Position: -41
Score: 5
Sequence: TAATTCCAATCAAACAACTTGGATTAG
Locus tag: Pjdr2_6037
Name: yhcL
Funciton: Sodium-cystine symporter
yhcL
Sodium-cystine symporter

Position: -50
Score: 5.2
Sequence: TAAATCCGATTAAACAAATAAGTAAAG
Locus tag: Pjdr2_0760
Name: ssuA
Funciton: Aliphatic sulfonate ABC transporter (binding lipoprotein)
Locus tag: Pjdr2_0761
Name: null
Funciton: Taurine dioxygenase
Locus tag: Pjdr2_0762
Name: null
Funciton: Stress responsive alpha-beta barrel domain protein
ssuA
Aliphatic sulfonate ABC transporter (binding lipoprotein)
Taurine dioxygenase
Stress responsive alpha-beta barrel domain protein

Position: -70
Score: 5.3
Sequence: TAATTCCAACTATTCCAATAAGGAAAA
Locus tag: Pjdr2_0756
Name: ssuB
Funciton: Aliphatic sulfonate ABC transporter (ATP-binding protein)
ssuB
Aliphatic sulfonate ABC transporter (ATP-binding protein)

Position: -53
Score: 4.9
Sequence: TAATTCCAAGTAAATCGGTGTGAAAAA
Locus tag: Pjdr2_6187
Name: ssuB
Funciton: Aliphatic sulfonate ABC transporter (ATP-binding protein)
Locus tag: Pjdr2_6186
Name: ssuA
Funciton: Aliphatic sulfonate ABC transporter (binding lipoprotein)
Locus tag: Pjdr2_6185
Name: ssuC
Funciton: aliphatic sulfonate ABC transporter (permease)
Locus tag: Pjdr2_6184
Name: ssuC
Funciton: aliphatic sulfonate ABC transporter (permease)
Locus tag: Pjdr2_6183
Name: yxeK
Funciton: Putative monooxygenase
ssuB
Aliphatic sulfonate ABC transporter (ATP-binding protein)
ssuA
Aliphatic sulfonate ABC transporter (binding lipoprotein)
ssuC
aliphatic sulfonate ABC transporter (permease)
ssuC
aliphatic sulfonate ABC transporter (permease)
yxeK
Putative monooxygenase

Position: -105
Score: 5.2
Sequence: TAAATCCGATTAATAAGGTTGGAAAAA
Locus tag: Pjdr2_5106
Name: yrrT
Funciton: SAM-dependent methyltransferase
Locus tag: Pjdr2_5105
Name: mccA
Funciton: Cystathionine beta-synthase (EC 4.2.1.22)
Locus tag: Pjdr2_5104
Name: mccB
Funciton: Cystathionine gamma-lyase (EC 4.4.1.1)
yrrT
SAM-dependent methyltransferase
mccA
Cystathionine beta-synthase (EC 4.2.1.22)
mccB
Cystathionine gamma-lyase (EC 4.4.1.1)

Position: -44
Score: 5.7
Sequence: AAAAACCAACTAAATTAGTCGGAATAA
Locus tag: Pjdr2_0074
Name: cysK
Funciton: Cysteine synthase (EC 2.5.1.47)
cysK
Cysteine synthase (EC 2.5.1.47)

Position: -96
Score: 4.7
Sequence: CATAACCAACTAAACAGGTAGGAATAA
Locus tag: Pjdr2_4823
Name: subI
Funciton: Sulfate ABC transporter (sulfate-binding protein)
Locus tag: Pjdr2_4822
Name: cysT
Funciton: Sulfate ABC transporter (permease)
Locus tag: Pjdr2_4821
Name: cysW
Funciton: Sulfate ABC transporter (permease)
Locus tag: Pjdr2_4820
Name: null
Funciton: Hypothetical protein
subI
Sulfate ABC transporter (sulfate-binding protein)
cysT
Sulfate ABC transporter (permease)
cysW
Sulfate ABC transporter (permease)
Hypothetical protein
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