Regulon of CcpA in Bacillus amyloliquefaciens FZB42
| Regulator type: | Transcription factor |
| TF locus tag: | RBAM_026860 |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Carbon catabolism |
| Effector: | HPr, phosphocarrier protein |
| Regulog: | CcpA - Bacillales |
| Statistics of regulated genes: | |
| - Genes | 177 |
| - Operons | 74 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By trascription factor - CcpA
- By TF family - LacI
- By effector - HPr, phosphocarrier protein
- By pathway - Carbon catabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: 1297
Score: 4.5 Sequence: TTGATAACGCTTTCGA
Locus tag: RBAM_007780
Name: citS Funciton: Two-component sensor kinase
Locus tag: RBAM_007790
Name: citT Funciton: Transcriptional regulatory protein |
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citS
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Two-component sensor kinase
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citT
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Transcriptional regulatory protein
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Position: 0
Score: 4.4 Sequence: ATGAATGCGATTACAA
Locus tag: RBAM_025770
Name: cstA Funciton: Carbon starvation-induced membrane protein |
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cstA
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Carbon starvation-induced membrane protein
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Position: -73
Score: 4.8 Sequence: ATGAAAATGTTTACAT
Locus tag: RBAM_023110
Name: yqgY Funciton: Uncharacterized short membrane protein |
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yqgY
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Uncharacterized short membrane protein
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Position: -61
Score: 4.8 Sequence: ATGAAAACGGTTAAAA
Locus tag: RBAM_023130
Name: yqgW Funciton: Alkaliphily related protein |
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yqgW
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Alkaliphily related protein
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Position: -67
Score: 5 Sequence: TTGAAAGCGCTTTATT
Locus tag: RBAM_008340
Name: acoR Funciton: Transcriptional activator of acetoin dehydrogenase operon AcoR |
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acoR
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Transcriptional activator of acetoin dehydrogenase operon AcoR
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Position: -67
Score: 5.3 Sequence: ATGAAAGCGCTTTAAA
Locus tag: RBAM_025950
Name: lrgA Funciton: Antiholin-like protein LrgA
Locus tag: RBAM_025940
Name: lrgB Funciton: LrgA-associated membrane protein LrgB |
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lrgA
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Antiholin-like protein LrgA
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lrgB
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LrgA-associated membrane protein LrgB
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Position: -74
Score: 4.5 Sequence: ATGTAAACGGTTTATA
Locus tag: RBAM_021610
Name: drm Funciton: Phosphopentomutase (EC 5.4.2.7)
Locus tag: RBAM_021600
Name: punA Funciton: Purine nucleoside phosphorylase (EC 2.4.2.1) |
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drm
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Phosphopentomutase (EC 5.4.2.7)
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punA
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Purine nucleoside phosphorylase (EC 2.4.2.1)
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Position: -96
Score: 4.6 Sequence: TTGTAAGCGTTTTATG
Locus tag: RBAM_004230
Name: mtlA Funciton: PTS family mannitol-permease II, BC component
Locus tag: RBAM_004240
Name: mtlF Funciton: PTS mannitol-specific enzyme IIA component
Locus tag: RBAM_004250
Name: mtlD Funciton: Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17) |
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mtlA
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PTS family mannitol-permease II, BC component
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mtlF
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PTS mannitol-specific enzyme IIA component
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mtlD
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Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
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Position: -96
Score: 5 Sequence: TTGAAAGCGTTTTATA
Locus tag: RBAM_004390
Name: mtlR Funciton: Mannitol operon activator, BglG family |
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mtlR
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Mannitol operon activator, BglG family
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Position: -33
Score: 4.6 Sequence: TTGTAAGCGAATACAA
Locus tag: RBAM_036470
Name: nupC Funciton: Nucleoside permease NupC
Locus tag: RBAM_036460
Name: pdp Funciton: Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2) |
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nupC
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Nucleoside permease NupC
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pdp
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Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2)
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Position: 34
Score: 5.1 Sequence: TTGAAAGCGCAAACAA
Locus tag: RBAM_017350
Name: xylA Funciton: Xylose isomerase (EC 5.3.1.5)
Locus tag: RBAM_017360
Name: xylB Funciton: Xylulose kinase (EC 2.7.1.17) |
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xylA
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Xylose isomerase (EC 5.3.1.5)
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xylB
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Xylulose kinase (EC 2.7.1.17)
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Position: -38
Score: 4.7 Sequence: ATGAAAACGTTTTAAC
Locus tag: RBAM_035870
Name: gmuB Funciton: PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
Locus tag: RBAM_035880
Name: gmuA Funciton: PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
Locus tag: RBAM_035890
Name: gmuC Funciton: PTS system, cellobiose-specific IIC component (EC 2.7.1.69)
Locus tag: RBAM_035900
Name: gmuD Funciton: Beta-glucosidase (EC 3.2.1.21)
Locus tag: RBAM_035910
Name: gmuE Funciton: Fructokinase (EC 2.7.1.4)
Locus tag: RBAM_035920
Name: gmuF Funciton: Mannose-6-phosphate isomerase (EC 5.3.1.8)
Locus tag: RBAM_035930
Name: gmuG Funciton: Mannan endo-1,4-beta-mannosidase precursor (EC 3.2.1.78) |
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gmuB
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PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
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gmuA
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PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
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gmuC
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PTS system, cellobiose-specific IIC component (EC 2.7.1.69)
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gmuD
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Beta-glucosidase (EC 3.2.1.21)
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gmuE
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Fructokinase (EC 2.7.1.4)
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gmuF
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Mannose-6-phosphate isomerase (EC 5.3.1.8)
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gmuG
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Mannan endo-1,4-beta-mannosidase precursor (EC 3.2.1.78)
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Position: -72
Score: 4.9 Sequence: TTGAAAACGCTTTATA
Locus tag: RBAM_026810
Name: acuA Funciton: Acetyltransferase AcuA, acetyl-CoA synthetase inhibitor
Locus tag: RBAM_026820
Name: acuB Funciton: Component of the acetoin degradation regulation pathway
Locus tag: RBAM_026830
Name: acuC Funciton: Acetoin dehydrogenase |
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acuA
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Acetyltransferase AcuA, acetyl-CoA synthetase inhibitor
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acuB
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Component of the acetoin degradation regulation pathway
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acuC
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Acetoin dehydrogenase
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Position: 21
Score: 4.3 Sequence: TTGCAAACGGATTCAA
Locus tag: RBAM_036020
Name: cimH Funciton: L-Malate Citrate symporter (TC 2.A.24.2.4) |
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cimH
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L-Malate Citrate symporter (TC 2.A.24.2.4)
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Position: -178
Score: 4.5 Sequence: ATTATAGCGCTTTCAA
Locus tag: RBAM_034860
Name: ywfI Funciton: Predicted heme peroxidase involved in anaerobic stress response |
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ywfI
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Predicted heme peroxidase involved in anaerobic stress response
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Position: -46
Score: 4.9 Sequence: ATTAAAGCGTTTACAA
Locus tag: RBAM_014960
Name: ylbP Funciton: Uncharacterized N-acetyltransferase (EC 2.3.1.-) |
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ylbP
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Uncharacterized N-acetyltransferase (EC 2.3.1.-)
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Position: -51
Score: 4.6 Sequence: TTGTAAGGGTTTACAT
Locus tag: RBAM_013160
Name: ykoM Funciton: Putative transcriptional regulator, MarR family |
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ykoM
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Putative transcriptional regulator, MarR family
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Position: -52
Score: 4.8 Sequence: ATGAAAGCGCAGTCTA
Locus tag: RBAM_015920
Name: sucC Funciton: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Locus tag: RBAM_015930
Name: sucD Funciton: Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) |
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sucC
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Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
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sucD
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Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
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Position: -109
Score: 4.4 Sequence: TTTTAACCGTTTTCAT
Locus tag: RBAM_023120
Name: yqgX Funciton: Similar to Hydroxyacylglutathione hydrolase, but in an organism lacking glutathione biosynthesis |
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yqgX
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Similar to Hydroxyacylglutathione hydrolase, but in an organism lacking glutathione biosynthesis
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Position: -62
Score: 5 Sequence: TTGAAAACGTTTTCCA
Locus tag: RBAM_002800
Name: glsA1 Funciton: Glutaminase (EC 3.5.1.2)
Locus tag: RBAM_002790
Name: glnT Funciton: Glutamine permease |
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glsA1
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Glutaminase (EC 3.5.1.2)
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glnT
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Glutamine permease
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Position: -33
Score: 5.3 Sequence: TTGAAAGCGCTTTAAA
Locus tag: RBAM_025870
Name: abnA Funciton: Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99) |
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abnA
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Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99)
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Position: -123
Score: 4.2 Sequence: ATGTTAACGGATACAA
Position: -38
Score: 4.5 Sequence: TTGTTAACGTTAACAT
Locus tag: RBAM_012380
Name: uxaC Funciton: Uronate isomerase (EC 5.3.1.12)
Locus tag: RBAM_012390
Name: exuM Funciton: Melibiose carrier protein, Na+/melibiose symporter
Locus tag: RBAM_012400
Name: exuR Funciton: Transcriptional repressor of hexuronate utilization operon, LacI family
Locus tag: RBAM_012410
Name: uxaB Funciton: Altronate oxidoreductase (EC 1.1.1.58)
Locus tag: RBAM_012420
Name: uxaA Funciton: Altronate hydrolase (EC 4.2.1.7) |
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uxaC
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Uronate isomerase (EC 5.3.1.12)
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exuM
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Melibiose carrier protein, Na+/melibiose symporter
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exuR
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Transcriptional repressor of hexuronate utilization operon, LacI family
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uxaB
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Altronate oxidoreductase (EC 1.1.1.58)
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uxaA
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Altronate hydrolase (EC 4.2.1.7)
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Position: -46
Score: 4.7 Sequence: GTGAAAGCGCTTACCA
Locus tag: RBAM_036180
Name: citH Funciton: Ca2+/citrate complex secondary transporter |
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citH
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Ca2+/citrate complex secondary transporter
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Position: -87
Score: 4.4 Sequence: TTAACAACGTTTACAT
Locus tag: RBAM_020070
Name: cspD Funciton: Cold-shock protein, molecular chaperone, RNA-helicase co-factor |
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cspD
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Cold-shock protein, molecular chaperone, RNA-helicase co-factor
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Position: -190
Score: 5 Sequence: TTGTAAGCGTATACAA
Locus tag: RBAM_023500
Name: cccA Funciton: Membrane-attached cytochrome c550 |
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cccA
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Membrane-attached cytochrome c550
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Position: -44
Score: 5.2 Sequence: ATGAAAACGTTTACTA
Locus tag: RBAM_018380
Name: yngI Funciton: Long-chain fatty-acid-CoA ligase (EC 6.2.1.3)
Locus tag: RBAM_018370
Name: yngH Funciton: Biotin carboxylase of methylcrotonyl-CoA carboxylase (EC 6.3.4.14)
Locus tag: RBAM_018360
Name: yngHB Funciton: Biotin carboxyl carrier protein of methylcrotonyl-CoA carboxylase ( EC:6.4.1.2 )
Locus tag: RBAM_018350
Name: yngG Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Locus tag: RBAM_018340
Name: yngF Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: RBAM_018330
Name: yngE Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
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yngI
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Long-chain fatty-acid-CoA ligase (EC 6.2.1.3)
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yngH
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Biotin carboxylase of methylcrotonyl-CoA carboxylase (EC 6.3.4.14)
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yngHB
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Biotin carboxyl carrier protein of methylcrotonyl-CoA carboxylase ( EC:6.4.1.2 )
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yngG
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Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
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yngF
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Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
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yngE
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Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
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Position: -29
Score: 4.9 Sequence: ATGTAAGCGGATTCAA
Locus tag: RBAM_010120
Name: yhaR Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) |
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yhaR
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Enoyl-CoA hydratase (EC 4.2.1.17)
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Position: -82
Score: 4.7 Sequence: ATGAAAACGGTTTCGT
Locus tag: RBAM_024210
Name: manR Funciton: Transcriptional regulator of mannose utilization, BglG family |
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manR
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Transcriptional regulator of mannose utilization, BglG family
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Position: -32
Score: 4.1 Sequence: TTGTAAACGAATACAC
Locus tag: RBAM_001800
Name: mrp Funciton: Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like |
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mrp
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Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like
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Position: -498
Score: 5.2 Sequence: ATGAAAGCGTATACAA
Locus tag: RBAM_025370
Name: ilvB Funciton: Acetolactate synthase large subunit (EC 2.2.1.6)
Locus tag: RBAM_025360
Name: ilvH Funciton: Acetolactate synthase small subunit (EC 2.2.1.6)
Locus tag: RBAM_025350
Name: ilvC Funciton: Ketol-acid reductoisomerase (EC 1.1.1.86)
Locus tag: RBAM_025340
Name: leuA Funciton: 2-isopropylmalate synthase (EC 2.3.3.13)
Locus tag: RBAM_025330
Name: leuB Funciton: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
Locus tag: RBAM_025320
Name: leuC Funciton: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
Locus tag: RBAM_025310
Name: leuD Funciton: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
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ilvB
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Acetolactate synthase large subunit (EC 2.2.1.6)
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ilvH
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Acetolactate synthase small subunit (EC 2.2.1.6)
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ilvC
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Ketol-acid reductoisomerase (EC 1.1.1.86)
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leuA
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2-isopropylmalate synthase (EC 2.3.3.13)
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leuB
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3-isopropylmalate dehydrogenase (EC 1.1.1.85)
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leuC
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3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
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leuD
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3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
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Position: -196
Score: 5 Sequence: ATGAAAACGCTACCAA
Locus tag: RBAM_007070
Name: gatC Funciton: Aspartyl (EC 6.3.5.6)/Glutamyl (EC 6.3.5.7) -tRNA amidotransferase subunit C
Locus tag: RBAM_007080
Name: gatA Funciton: Aspartyl (EC 6.3.5.6)/Glutamyl (EC 6.3.5.7) -tRNA amidotransferase subunit A
Locus tag: RBAM_007090
Name: gatB Funciton: Aspartyl (EC 6.3.5.6)/Glutamyl (EC 6.3.5.7) -tRNA amidotransferase subunit B |
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gatC
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Aspartyl (EC 6.3.5.6)/Glutamyl (EC 6.3.5.7) -tRNA amidotransferase subunit C
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gatA
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Aspartyl (EC 6.3.5.6)/Glutamyl (EC 6.3.5.7) -tRNA amidotransferase subunit A
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gatB
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Aspartyl (EC 6.3.5.6)/Glutamyl (EC 6.3.5.7) -tRNA amidotransferase subunit B
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Position: 567
Score: 4.5 Sequence: TGGAAAGCGCTTACAC
Locus tag: RBAM_031510
Name: sigL Funciton: DNA-directed RNA polymerase sigma subunit SigL |
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sigL
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DNA-directed RNA polymerase sigma subunit SigL
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Position: -146
Score: 4.7 Sequence: TTGTAAGCGGTACCAA
Locus tag: RBAM_026400
Name: ackA Funciton: Acetate kinase (EC 2.7.2.1) |
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ackA
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Acetate kinase (EC 2.7.2.1)
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Position: 433
Score: 4.9 Sequence: ATGTAAGCGTTTGCTT
Locus tag: RBAM_008300
Name: acoA Funciton: Acetoin dehydrogenase E1 component alpha-subunit (EC 1.2.4.-)
Locus tag: RBAM_008310
Name: acoB Funciton: Acetoin dehydrogenase E1 component beta-subunit (EC 1.2.4.-)
Locus tag: RBAM_008320
Name: acoC Funciton: Dihydrolipoamide acetyltransferase component (E2) of acetoin dehydrogenase complex (EC 2.3.1.-)
Locus tag: RBAM_008330
Name: acoL Funciton: Dihydrolipoamide dehydrogenase of acetoin dehydrogenase (EC 1.8.1.4) |
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acoA
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Acetoin dehydrogenase E1 component alpha-subunit (EC 1.2.4.-)
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acoB
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Acetoin dehydrogenase E1 component beta-subunit (EC 1.2.4.-)
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acoC
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Dihydrolipoamide acetyltransferase component (E2) of acetoin dehydrogenase complex (EC 2.3.1.-)
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acoL
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Dihydrolipoamide dehydrogenase of acetoin dehydrogenase (EC 1.8.1.4)
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Position: -181
Score: 4.7 Sequence: ATGTAAGCGATTACTT
Locus tag: RBAM_031490
Name: lutR Funciton: Lactate-responsive regulator, GntR family
Locus tag: RBAM_031480
Name: null Funciton: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
Locus tag: RBAM_031470
Name: lutA Funciton: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit
Locus tag: RBAM_031460
Name: lutB Funciton: Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit
Locus tag: RBAM_031450
Name: lutC Funciton: Predicted L-lactate dehydrogenase, hypothetical protein subunit |
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lutR
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Lactate-responsive regulator, GntR family
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Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
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lutA
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Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit
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lutB
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Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit
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lutC
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Predicted L-lactate dehydrogenase, hypothetical protein subunit
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Position: -102
Score: 4.5 Sequence: TATAAAGCGTTTTCAA
Locus tag: RBAM_026800
Name: acsA Funciton: Acetyl-coenzyme A synthetase (EC 6.2.1.1) |
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acsA
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Acetyl-coenzyme A synthetase (EC 6.2.1.1)
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Position: -118
Score: 4.9 Sequence: ATGTAAGCGTTAACAG
Locus tag: RBAM_003280
Name: amyE Funciton: Alpha-amylase precursor |
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amyE
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Alpha-amylase precursor
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Position: -43
Score: 4.9 Sequence: TTGTAAGCGTTTTTAT
Locus tag: RBAM_031320
Name: araE Funciton: Arabinose-proton symporter |
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araE
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Arabinose-proton symporter
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Position: -230
Score: 4.9 Sequence: ATGAAAGCGTTGGCAT
Position: -34
Score: 4.5 Sequence: AAGAAATCGCTTTCAA
Locus tag: RBAM_036190
Name: bglS Funciton: Endo-beta-1,3-1,4 glucanase (Licheninase) (EC 3.2.1.73) |
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bglS
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Endo-beta-1,3-1,4 glucanase (Licheninase) (EC 3.2.1.73)
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Position: 411
Score: 4.8 Sequence: ATGAAAACGTTATCAC
Locus tag: RBAM_025620
Name: lcfA Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
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lcfA
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Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
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Position: -29
Score: 4.8 Sequence: ATGTAAACGTTATCAG
Locus tag: RBAM_008360
Name: glvA Funciton: Maltose-6'-phosphate glucosidase (EC 3.2.1.122)
Locus tag: RBAM_008370
Name: glvR Funciton: Transcriptional activator of maltose utilization, RpiR family
Locus tag: RBAM_008380
Name: glvC Funciton: PTS system, maltose and glucose-specific IIC component (EC 2.7.1.69) / PTS system, maltose and glucose-specific IIB component (EC 2.7.1.69) |
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glvA
|
Maltose-6'-phosphate glucosidase (EC 3.2.1.122)
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glvR
|
Transcriptional activator of maltose utilization, RpiR family
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glvC
|
PTS system, maltose and glucose-specific IIC component (EC 2.7.1.69) / PTS system, maltose and glucose-specific IIB component (EC 2.7.1.69)
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Position: -75
Score: 5.1 Sequence: ATGAAAGCGATTTCAT
Locus tag: RBAM_035790
Name: licB Funciton: PTS system, lichenan-specific IIB component (EC 2.7.1.69); PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
Locus tag: RBAM_035780
Name: licC Funciton: PTS system, lichenan-specific IIC component (EC 2.7.1.69)
Locus tag: RBAM_035770
Name: licA Funciton: PTS system, lichenan-specific IIA component (EC 2.7.1.69)
Locus tag: RBAM_035760
Name: licH Funciton: 6-phospho-beta-glucosidase (EC 3.2.1.86) |
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licB
|
PTS system, lichenan-specific IIB component (EC 2.7.1.69); PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
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licC
|
PTS system, lichenan-specific IIC component (EC 2.7.1.69)
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licA
|
PTS system, lichenan-specific IIA component (EC 2.7.1.69)
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licH
|
6-phospho-beta-glucosidase (EC 3.2.1.86)
|
||
|
Position: -28
Score: 4.5 Sequence: ATGAATACGTTTCCAA
Locus tag: RBAM_014120
Name: fruR Funciton: Transcriptional regulator of fructose utilization, DeoR family
Locus tag: RBAM_014130
Name: fruK Funciton: Tagatose-6-phosphate kinase (EC 2.7.1.144) / 1-phosphofructokinase (EC 2.7.1.56)
Locus tag: RBAM_014140
Name: fruA Funciton: PTS system fructose-specific enzyme II, ABC subunits (EC 2.7.1.69) |
|||
|
fruR
|
Transcriptional regulator of fructose utilization, DeoR family
|
||
|
fruK
|
Tagatose-6-phosphate kinase (EC 2.7.1.144) / 1-phosphofructokinase (EC 2.7.1.56)
|
||
|
fruA
|
PTS system fructose-specific enzyme II, ABC subunits (EC 2.7.1.69)
|
||
|
Position: -32
Score: 5 Sequence: AAGAAAGCGTTTACAA
Locus tag: RBAM_036040
Name: msmX Funciton: Maltose/maltodextrin transport ATP-binding protein (EC 3.6.3.19) |
|||
|
msmX
|
Maltose/maltodextrin transport ATP-binding protein (EC 3.6.3.19)
|
||
|
Position: -33
Score: 5 Sequence: ATGTAAACGGTTACAT
Locus tag: RBAM_033080
Name: rbsR Funciton: Ribose operon repressor, LacI family
Locus tag: RBAM_033090
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: RBAM_033100
Name: rbsD Funciton: Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
Locus tag: RBAM_033110
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: RBAM_033120
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: RBAM_033130
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) |
|||
|
rbsR
|
Ribose operon repressor, LacI family
|
||
|
rbsK
|
Ribokinase (EC 2.7.1.15)
|
||
|
rbsD
|
Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
|
||
|
rbsA
|
Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
|
||
|
rbsC
|
Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
|
||
|
rbsB
|
Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
|
||
|
Position: -166
Score: 5.3 Sequence: ATGAAAGCGTTTTCTT
Locus tag: RBAM_026150
Name: phoP Funciton: Alkaline phosphatase synthesis transcriptional regulatory protein PhoP
Locus tag: RBAM_026140
Name: phoR Funciton: Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) |
|||
|
phoP
|
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP
|
||
|
phoR
|
Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3)
|
||
|
Position: 318
Score: 4 Sequence: GTGAAAACGCTTGCGG
Locus tag: RBAM_007970
Name: treP Funciton: PTS system, trehalose-specific enzyme II, BC component (EC 2.7.1.69)
Locus tag: RBAM_007980
Name: treA Funciton: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
Locus tag: RBAM_007990
Name: treR Funciton: Transcriptional repressor of trehalose operon, GntR family |
|||
|
treP
|
PTS system, trehalose-specific enzyme II, BC component (EC 2.7.1.69)
|
||
|
treA
|
Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
|
||
|
treR
|
Transcriptional repressor of trehalose operon, GntR family
|
||
|
Position: -177
Score: 4.5 Sequence: ATGTAACCGTTTGCTT
Position: -102
Score: 4.8 Sequence: TTGTAAGCGTTTAATT
Position: 67
Score: 4.5 Sequence: ATGAAGACGTTATCAA
Locus tag: RBAM_036780
Name: iolA Funciton: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27)
Locus tag: RBAM_036770
Name: iolB Funciton: 5-deoxy-glucuronate isomerase (EC 5.3.1.-) |
|||
|
iolA
|
Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27)
|
||
|
iolB
|
5-deoxy-glucuronate isomerase (EC 5.3.1.-)
|
||
|
Position: -172
Score: 5.1 Sequence: ATGAAAACGTTGTCAT
Locus tag: RBAM_036760
Name: iolC Funciton: 5-keto-2-deoxygluconokinase (EC 2.7.1.92)
Locus tag: RBAM_036750
Name: iolD Funciton: Epi-inositol hydrolase (EC 3.7.1.-)
Locus tag: RBAM_036740
Name: iolE Funciton: Inosose dehydratase (EC 4.2.1.44)
Locus tag: RBAM_036730
Name: iolF Funciton: Minor myo-inositol transporter
Locus tag: RBAM_036720
Name: iolG Funciton: Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18)
Locus tag: RBAM_036710
Name: iolH Funciton: Xylose isomerase (EC 5.3.1.5)
Locus tag: RBAM_036700
Name: iolI Funciton: Inosose isomerase (EC 5.3.99.-)
Locus tag: RBAM_036690
Name: iolJ Funciton: Fructose-bisphosphate aldolase class II (EC 4.1.2.13) |
|||
|
iolC
|
5-keto-2-deoxygluconokinase (EC 2.7.1.92)
|
||
|
iolD
|
Epi-inositol hydrolase (EC 3.7.1.-)
|
||
|
iolE
|
Inosose dehydratase (EC 4.2.1.44)
|
||
|
iolF
|
Minor myo-inositol transporter
|
||
|
iolG
|
Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18)
|
||
|
iolH
|
Xylose isomerase (EC 5.3.1.5)
|
||
|
iolI
|
Inosose isomerase (EC 5.3.99.-)
|
||
|
iolJ
|
Fructose-bisphosphate aldolase class II (EC 4.1.2.13)
|
||
|
Position: -33
Score: 5.1 Sequence: ATGTAAGCGTATTCAT
Locus tag: RBAM_007810
Name: citM Funciton: Mg(2+) Citrate transporter (TC 2.A.11.1.1) |
|||
|
citM
|
Mg(2+) Citrate transporter (TC 2.A.11.1.1)
|
||
|
Position: -45
Score: 4.9 Sequence: TTGAAAGCGTTTTAAG
Locus tag: RBAM_036390
Name: abnB Funciton: Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55) |
|||
|
abnB
|
Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55)
|
||
|
Position: -104
Score: 5.1 Sequence: TTGAAAGCGCTTTTAT
Locus tag: RBAM_017320
Name: xynP Funciton: Putative H+-xyloside symporter
Locus tag: RBAM_017330
Name: xynB Funciton: Beta-xylosidase (EC 3.2.1.37) |
|||
|
xynP
|
Putative H+-xyloside symporter
|
||
|
xynB
|
Beta-xylosidase (EC 3.2.1.37)
|
||
|
Position: -37
Score: 4.5 Sequence: ATGAAAACGCTTTTCT
Locus tag: RBAM_025750
Name: glcD Funciton: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
Locus tag: RBAM_025760
Name: glcF Funciton: Predicted glycolate dehydrogenase, 2-subunit type (EC 1.1.99.14), iron-sulfur subunit GlcF |
|||
|
glcD
|
Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
|
||
|
glcF
|
Predicted glycolate dehydrogenase, 2-subunit type (EC 1.1.99.14), iron-sulfur subunit GlcF
|
||
|
Position: -99
Score: 4.6 Sequence: AAGAAAACGCATACAT
Locus tag: RBAM_013910
Name: ccpC Funciton: Transcriptional regulators, LysR family |
|||
|
ccpC
|
Transcriptional regulators, LysR family
|
||
|
Position: -114
Score: 4.6 Sequence: ATGTAAGCATTTTCTT
Locus tag: RBAM_026180
Name: citZ Funciton: Citrate synthase (si) (EC 2.3.3.1)
Locus tag: RBAM_026170
Name: icd Funciton: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
Locus tag: RBAM_026160
Name: mdh Funciton: Malate dehydrogenase (EC 1.1.1.37) |
|||
|
citZ
|
Citrate synthase (si) (EC 2.3.3.1)
|
||
|
icd
|
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
|
||
|
mdh
|
Malate dehydrogenase (EC 1.1.1.37)
|
||
|
Position: -42
Score: 5.2 Sequence: TTGTAAGCGCTTACTA
Locus tag: RBAM_018230
Name: yxjC Funciton: D-beta-hydroxybutyrate permease
Locus tag: RBAM_018220
Name: scoA Funciton: Butyrate-acetoacetate CoA-transferase subunit A (EC 2.8.3.9)
Locus tag: RBAM_018210
Name: scoB Funciton: 3-oxoacid CoA-transferase( EC:2.8.3.5 )
Locus tag: RBAM_018200
Name: yxjF Funciton: D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) |
|||
|
yxjC
|
D-beta-hydroxybutyrate permease
|
||
|
scoA
|
Butyrate-acetoacetate CoA-transferase subunit A (EC 2.8.3.9)
|
||
|
scoB
|
3-oxoacid CoA-transferase( EC:2.8.3.5 )
|
||
|
yxjF
|
D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30)
|
||
|
Position: -43
Score: 4.6 Sequence: GTGTAAGCGTTATCTT
Locus tag: RBAM_022450
Name: mmgA Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: RBAM_022440
Name: mmgB Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
Locus tag: RBAM_022430
Name: mmgC Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Locus tag: RBAM_022420
Name: mmgD Funciton: Citrate synthase (si) (EC 2.3.3.1)
Locus tag: RBAM_022410
Name: mmgE Funciton: 2-methylcitrate dehydratase (EC 4.2.1.79)
Locus tag: RBAM_022400
Name: prpB Funciton: Methylisocitrate lyase (EC 4.1.3.30) |
|||
|
mmgA
|
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
|
||
|
mmgB
|
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
|
||
|
mmgC
|
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
|
||
|
mmgD
|
Citrate synthase (si) (EC 2.3.3.1)
|
||
|
mmgE
|
2-methylcitrate dehydratase (EC 4.2.1.79)
|
||
|
prpB
|
Methylisocitrate lyase (EC 4.1.3.30)
|
||
|
Position: -54
Score: 5.3 Sequence: TTGAAAACGCTATCAT
Locus tag: RBAM_004800
Name: dctA Funciton: C4-dicarboxylate transport protein |
|||
|
dctA
|
C4-dicarboxylate transport protein
|
||
|
Position: -99
Score: 5 Sequence: TTGAAAGCGCTATAAT
Locus tag: RBAM_034850
Name: pta Funciton: Phosphate acetyltransferase (EC 2.3.1.8) |
|||
|
pta
|
Phosphate acetyltransferase (EC 2.3.1.8)
|
||
|
Position: -257
Score: 4.5 Sequence: ATGTAAGCGTTGACAC
Locus tag: RBAM_036360
Name: bglP Funciton: PTS system, aryl-phospho-beta-glucoside-specific component IIABC (EC 2.7.1.69)
Locus tag: RBAM_036350
Name: bglH Funciton: Aryl-phospho-beta-D-glucosidase (EC 3.2.1.86) |
|||
|
bglP
|
PTS system, aryl-phospho-beta-glucoside-specific component IIABC (EC 2.7.1.69)
|
||
|
bglH
|
Aryl-phospho-beta-D-glucosidase (EC 3.2.1.86)
|
||
|
Position: -143
Score: 4.3 Sequence: ATGTACACGTTTTCTT
Locus tag: RBAM_025520
Name: sdhC Funciton: Succinate dehydrogenase cytochrome b558 subunit
Locus tag: RBAM_025510
Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: RBAM_025500
Name: sdhB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: RBAM_025490
Name: ysmA Funciton: 4-hydroxybenzoyl-CoA thioesterase, putative |
|||
|
sdhC
|
Succinate dehydrogenase cytochrome b558 subunit
|
||
|
sdhA
|
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
|
||
|
sdhB
|
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
|
||
|
ysmA
|
4-hydroxybenzoyl-CoA thioesterase, putative
|
||
|
Position: -175
Score: 4.7 Sequence: ACGAAAGCGCTATCAT
Position: -151
Score: 5 Sequence: ATGAAAGCGCATTAAA
Locus tag: RBAM_035290
Name: sacP Funciton: PTS sucrose-specific enzyme IIBC component
Locus tag: RBAM_035280
Name: sacA Funciton: Sucrose-6-phosphate hydrolase (EC 3.2.1.26) |
|||
|
sacP
|
PTS sucrose-specific enzyme IIBC component
|
||
|
sacA
|
Sucrose-6-phosphate hydrolase (EC 3.2.1.26)
|
||
|
Position: -132
Score: 4.9 Sequence: TTGTAAACGCTTTAAT
Locus tag: RBAM_014970
Name: apbA Funciton: 2-dehydropantoate 2-reductase (EC 1.1.1.169)
Locus tag: RBAM_014980
Name: yllA Funciton: Hypothetical membrane spanning protein |
|||
|
apbA
|
2-dehydropantoate 2-reductase (EC 1.1.1.169)
|
||
|
yllA
|
Hypothetical membrane spanning protein
|
||
|
Position: -200
Score: 4.3 Sequence: CTTAAAGCGTTTACAT
Position: -162
Score: 4.9 Sequence: AAGAAAGCGCTATCAT
Locus tag: RBAM_002610
Name: glpT Funciton: MFS family major facilitator transporter, glycerol-3-phosphate:cation symporter
Locus tag: RBAM_002600
Name: glpQ Funciton: Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46) |
|||
|
glpT
|
MFS family major facilitator transporter, glycerol-3-phosphate:cation symporter
|
||
|
glpQ
|
Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46)
|
||
|
Position: -229
Score: 4.9 Sequence: ATAAAAACGCTTACAA
Position: -59
Score: 4.6 Sequence: ATGAAAGGGCTTACTA
Locus tag: RBAM_031330
Name: araR Funciton: Transcriptional repressor of arabinoside utilization operon, GntR family |
|||
|
araR
|
Transcriptional repressor of arabinoside utilization operon, GntR family
|
||
|
Position: -101
Score: 4.7 Sequence: TTGGAAGCGTTTTTAT
Locus tag: RBAM_019130
Name: odhA Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: RBAM_019120
Name: odhB Funciton: 2-oxoglutarate dehydrogenase E2 component |
|||
|
odhA
|
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
|
||
|
odhB
|
2-oxoglutarate dehydrogenase E2 component
|
||
|
Position: 15
Score: 4.3 Sequence: AAGAAAGCGTTTGCTG
Locus tag: RBAM_035460
Name: galK Funciton: Galactokinase (EC 2.7.1.6)
Locus tag: RBAM_035450
Name: galT Funciton: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
|||
|
galK
|
Galactokinase (EC 2.7.1.6)
|
||
|
galT
|
Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
|
||
|
Position: -37
Score: 4.5 Sequence: TTGAAAGCCTATACAT
Locus tag: RBAM_020890
Name: ndk Funciton: Nucleoside diphosphate kinase (EC 2.7.4.6) |
|||
|
ndk
|
Nucleoside diphosphate kinase (EC 2.7.4.6)
|
||
|
Position: -98
Score: 4.4 Sequence: TGTAAAGCGCTTACAA
Locus tag: RBAM_025570
Name: xsa Funciton: Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55) |
|||
|
xsa
|
Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55)
|
||
|
Position: -32
Score: 4.4 Sequence: ATGCAAGCGCTTTATT
Locus tag: RBAM_025860
Name: araA Funciton: L-arabinose isomerase (EC 5.3.1.4)
Locus tag: RBAM_025850
Name: araB Funciton: Ribulokinase (EC 2.7.1.16)
Locus tag: RBAM_025840
Name: araD Funciton: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
Locus tag: RBAM_025830
Name: araL Funciton: Arabinose operon protein AraL
Locus tag: RBAM_025820
Name: araM Funciton: Glycerol dehydrogenase (EC 1.1.1.6)
Locus tag: RBAM_025810
Name: araN Funciton: Alpha-arabinosides ABC transport system, substrate-binding protein
Locus tag: RBAM_025800
Name: araP Funciton: Alpha-arabinosides ABC transport system, permease protein 1
Locus tag: RBAM_025790
Name: araQ Funciton: Alpha-arabinosides ABC transport system, permease protein 2
Locus tag: RBAM_025780
Name: abfA Funciton: Alpha-N-arabinofuranosidase (EC 3.2.1.55) |
|||
|
araA
|
L-arabinose isomerase (EC 5.3.1.4)
|
||
|
araB
|
Ribulokinase (EC 2.7.1.16)
|
||
|
araD
|
L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
|
||
|
araL
|
Arabinose operon protein AraL
|
||
|
araM
|
Glycerol dehydrogenase (EC 1.1.1.6)
|
||
|
araN
|
Alpha-arabinosides ABC transport system, substrate-binding protein
|
||
|
araP
|
Alpha-arabinosides ABC transport system, permease protein 1
|
||
|
araQ
|
Alpha-arabinosides ABC transport system, permease protein 2
|
||
|
abfA
|
Alpha-N-arabinofuranosidase (EC 3.2.1.55)
|
||
|
Position: -95
Score: 4.3 Sequence: ATGAAAGCGTTACACT
Locus tag: RBAM_014810
Name: ylbB Funciton: CBS domain protein
Locus tag: RBAM_014820
Name: ylbC Funciton: Uncharacterized secreted protein with SCP domain |
|||
|
ylbB
|
CBS domain protein
|
||
|
ylbC
|
Uncharacterized secreted protein with SCP domain
|
||
|
Position: -91
Score: 4.8 Sequence: TTGAAAACGCTTACTC
Locus tag: RBAM_027180
Name: msmR Funciton: Transcriptional regulator of alpha-galactoside utilization, LacI family
Locus tag: RBAM_027190
Name: msmE Funciton: Multiple sugar ABC transporter, substrate-binding protein
Locus tag: RBAM_027200
Name: msmF Funciton: Multiple sugar ABC transporter, membrane-spanning permease protein MsmF
Locus tag: RBAM_027210
Name: msmG Funciton: Multiple sugar ABC transporter, membrane-spanning permease protein MsmG
Locus tag: RBAM_027220
Name: melA Funciton: Alpha-galactosidase (EC 3.2.1.22) |
|||
|
msmR
|
Transcriptional regulator of alpha-galactoside utilization, LacI family
|
||
|
msmE
|
Multiple sugar ABC transporter, substrate-binding protein
|
||
|
msmF
|
Multiple sugar ABC transporter, membrane-spanning permease protein MsmF
|
||
|
msmG
|
Multiple sugar ABC transporter, membrane-spanning permease protein MsmG
|
||
|
melA
|
Alpha-galactosidase (EC 3.2.1.22)
|
||
|
Position: 0
Score: 4.3 Sequence: ATGAAAGCGGTTCTAG
Locus tag: RBAM_017960
Name: yjmD Funciton: Oxidoreductase, zinc-binding dehydrogenase family (EC 1.1.1.-)
Locus tag: RBAM_017970
Name: kdgA Funciton: 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Locus tag: RBAM_017980
Name: uxuA Funciton: Mannonate dehydratase (EC 4.2.1.8)
Locus tag: RBAM_017990
Name: yjmF Funciton: D-mannonate oxidoreductase (EC 1.1.1.57)
Locus tag: RBAM_018000
Name: endR Funciton: Probable HTH-type transcriptional regulator endR, LacI family
Locus tag: RBAM_018010
Name: exuT Funciton: Hexuronate transporter |
|||
|
yjmD
|
Oxidoreductase, zinc-binding dehydrogenase family (EC 1.1.1.-)
|
||
|
kdgA
|
4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
|
||
|
uxuA
|
Mannonate dehydratase (EC 4.2.1.8)
|
||
|
yjmF
|
D-mannonate oxidoreductase (EC 1.1.1.57)
|
||
|
endR
|
Probable HTH-type transcriptional regulator endR, LacI family
|
||
|
exuT
|
Hexuronate transporter
|
||
|
Position: -80
Score: 5.1 Sequence: ATGTAAGCGTTTCCAA
Locus tag: RBAM_035650
Name: licC2 Funciton: PTS system, lichenan-specific IIC component (EC 2.7.1.69) |
|||
|
licC2
|
PTS system, lichenan-specific IIC component (EC 2.7.1.69)
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |