Regulon of CcpA in Bacillus amyloliquefaciens FZB42

Properties
Regulator type:	Transcription factor
TF locus tag:	RBAM_026860
Regulator family:	LacI
Regulation mode:
Biological process:	Carbon catabolism
Effector:	HPr, phosphocarrier protein
Regulog:	CcpA - Bacillales
Statistics of regulated genes:
- Genes	177
- Operons	74
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 559 sites [see more]

Member of regulog collections

By taxonomy - Bacillales
By trascription factor - CcpA
By TF family - LacI
By effector - HPr, phosphocarrier protein
By pathway - Carbon catabolism

Regulated operons
	Locus Tag	Name	Function
Position: 1297 Score: 4.5 Sequence: TTGATAACGCTTTCGA Locus tag: RBAM_007780 Name: citS Funciton: Two-component sensor kinase Locus tag: RBAM_007790 Name: citT Funciton: Transcriptional regulatory protein
	RBAM_007780	citS	Two-component sensor kinase
	RBAM_007790	citT	Transcriptional regulatory protein
Position: 0 Score: 4.4 Sequence: ATGAATGCGATTACAA Locus tag: RBAM_025770 Name: cstA Funciton: Carbon starvation-induced membrane protein
	RBAM_025770	cstA	Carbon starvation-induced membrane protein
Position: -73 Score: 4.8 Sequence: ATGAAAATGTTTACAT Locus tag: RBAM_023110 Name: yqgY Funciton: Uncharacterized short membrane protein
	RBAM_023110	yqgY	Uncharacterized short membrane protein
Position: -61 Score: 4.8 Sequence: ATGAAAACGGTTAAAA Locus tag: RBAM_023130 Name: yqgW Funciton: Alkaliphily related protein
	RBAM_023130	yqgW	Alkaliphily related protein
Position: -67 Score: 5 Sequence: TTGAAAGCGCTTTATT Locus tag: RBAM_008340 Name: acoR Funciton: Transcriptional activator of acetoin dehydrogenase operon AcoR
	RBAM_008340	acoR	Transcriptional activator of acetoin dehydrogenase operon AcoR
Position: -67 Score: 5.3 Sequence: ATGAAAGCGCTTTAAA Locus tag: RBAM_025950 Name: lrgA Funciton: Antiholin-like protein LrgA Locus tag: RBAM_025940 Name: lrgB Funciton: LrgA-associated membrane protein LrgB
	RBAM_025950	lrgA	Antiholin-like protein LrgA
	RBAM_025940	lrgB	LrgA-associated membrane protein LrgB
Position: -74 Score: 4.5 Sequence: ATGTAAACGGTTTATA Locus tag: RBAM_021610 Name: drm Funciton: Phosphopentomutase (EC 5.4.2.7) Locus tag: RBAM_021600 Name: punA Funciton: Purine nucleoside phosphorylase (EC 2.4.2.1)
	RBAM_021610	drm	Phosphopentomutase (EC 5.4.2.7)
	RBAM_021600	punA	Purine nucleoside phosphorylase (EC 2.4.2.1)
Position: -96 Score: 4.6 Sequence: TTGTAAGCGTTTTATG Locus tag: RBAM_004230 Name: mtlA Funciton: PTS family mannitol-permease II, BC component Locus tag: RBAM_004240 Name: mtlF Funciton: PTS mannitol-specific enzyme IIA component Locus tag: RBAM_004250 Name: mtlD Funciton: Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
	RBAM_004230	mtlA	PTS family mannitol-permease II, BC component
	RBAM_004240	mtlF	PTS mannitol-specific enzyme IIA component
	RBAM_004250	mtlD	Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
Position: -96 Score: 5 Sequence: TTGAAAGCGTTTTATA Locus tag: RBAM_004390 Name: mtlR Funciton: Mannitol operon activator, BglG family
	RBAM_004390	mtlR	Mannitol operon activator, BglG family
Position: -33 Score: 4.6 Sequence: TTGTAAGCGAATACAA Locus tag: RBAM_036470 Name: nupC Funciton: Nucleoside permease NupC Locus tag: RBAM_036460 Name: pdp Funciton: Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2)
	RBAM_036470	nupC	Nucleoside permease NupC
	RBAM_036460	pdp	Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2)
Position: 34 Score: 5.1 Sequence: TTGAAAGCGCAAACAA Locus tag: RBAM_017350 Name: xylA Funciton: Xylose isomerase (EC 5.3.1.5) Locus tag: RBAM_017360 Name: xylB Funciton: Xylulose kinase (EC 2.7.1.17)
	RBAM_017350	xylA	Xylose isomerase (EC 5.3.1.5)
	RBAM_017360	xylB	Xylulose kinase (EC 2.7.1.17)
Position: -38 Score: 4.7 Sequence: ATGAAAACGTTTTAAC Locus tag: RBAM_035870 Name: gmuB Funciton: PTS system, cellobiose-specific IIB component (EC 2.7.1.69) Locus tag: RBAM_035880 Name: gmuA Funciton: PTS system, cellobiose-specific IIA component (EC 2.7.1.69) Locus tag: RBAM_035890 Name: gmuC Funciton: PTS system, cellobiose-specific IIC component (EC 2.7.1.69) Locus tag: RBAM_035900 Name: gmuD Funciton: Beta-glucosidase (EC 3.2.1.21) Locus tag: RBAM_035910 Name: gmuE Funciton: Fructokinase (EC 2.7.1.4) Locus tag: RBAM_035920 Name: gmuF Funciton: Mannose-6-phosphate isomerase (EC 5.3.1.8) Locus tag: RBAM_035930 Name: gmuG Funciton: Mannan endo-1,4-beta-mannosidase precursor (EC 3.2.1.78)
	RBAM_035870	gmuB	PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
	RBAM_035880	gmuA	PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
	RBAM_035890	gmuC	PTS system, cellobiose-specific IIC component (EC 2.7.1.69)
	RBAM_035900	gmuD	Beta-glucosidase (EC 3.2.1.21)
	RBAM_035910	gmuE	Fructokinase (EC 2.7.1.4)
	RBAM_035920	gmuF	Mannose-6-phosphate isomerase (EC 5.3.1.8)
	RBAM_035930	gmuG	Mannan endo-1,4-beta-mannosidase precursor (EC 3.2.1.78)
Position: -72 Score: 4.9 Sequence: TTGAAAACGCTTTATA Locus tag: RBAM_026810 Name: acuA Funciton: Acetyltransferase AcuA, acetyl-CoA synthetase inhibitor Locus tag: RBAM_026820 Name: acuB Funciton: Component of the acetoin degradation regulation pathway Locus tag: RBAM_026830 Name: acuC Funciton: Acetoin dehydrogenase
	RBAM_026810	acuA	Acetyltransferase AcuA, acetyl-CoA synthetase inhibitor
	RBAM_026820	acuB	Component of the acetoin degradation regulation pathway
	RBAM_026830	acuC	Acetoin dehydrogenase
Position: 21 Score: 4.3 Sequence: TTGCAAACGGATTCAA Locus tag: RBAM_036020 Name: cimH Funciton: L-Malate Citrate symporter (TC 2.A.24.2.4)
	RBAM_036020	cimH	L-Malate Citrate symporter (TC 2.A.24.2.4)
Position: -178 Score: 4.5 Sequence: ATTATAGCGCTTTCAA Locus tag: RBAM_034860 Name: ywfI Funciton: Predicted heme peroxidase involved in anaerobic stress response
	RBAM_034860	ywfI	Predicted heme peroxidase involved in anaerobic stress response
Position: -46 Score: 4.9 Sequence: ATTAAAGCGTTTACAA Locus tag: RBAM_014960 Name: ylbP Funciton: Uncharacterized N-acetyltransferase (EC 2.3.1.-)
	RBAM_014960	ylbP	Uncharacterized N-acetyltransferase (EC 2.3.1.-)
Position: -51 Score: 4.6 Sequence: TTGTAAGGGTTTACAT Locus tag: RBAM_013160 Name: ykoM Funciton: Putative transcriptional regulator, MarR family
	RBAM_013160	ykoM	Putative transcriptional regulator, MarR family
Position: -52 Score: 4.8 Sequence: ATGAAAGCGCAGTCTA Locus tag: RBAM_015920 Name: sucC Funciton: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) Locus tag: RBAM_015930 Name: sucD Funciton: Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
	RBAM_015920	sucC	Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
	RBAM_015930	sucD	Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
Position: -109 Score: 4.4 Sequence: TTTTAACCGTTTTCAT Locus tag: RBAM_023120 Name: yqgX Funciton: Similar to Hydroxyacylglutathione hydrolase, but in an organism lacking glutathione biosynthesis
	RBAM_023120	yqgX	Similar to Hydroxyacylglutathione hydrolase, but in an organism lacking glutathione biosynthesis
Position: -62 Score: 5 Sequence: TTGAAAACGTTTTCCA Locus tag: RBAM_002800 Name: glsA1 Funciton: Glutaminase (EC 3.5.1.2) Locus tag: RBAM_002790 Name: glnT Funciton: Glutamine permease
	RBAM_002800	glsA1	Glutaminase (EC 3.5.1.2)
	RBAM_002790	glnT	Glutamine permease
Position: -33 Score: 5.3 Sequence: TTGAAAGCGCTTTAAA Locus tag: RBAM_025870 Name: abnA Funciton: Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99)
	RBAM_025870	abnA	Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99)
Position: -123 Score: 4.2 Sequence: ATGTTAACGGATACAA Position: -38 Score: 4.5 Sequence: TTGTTAACGTTAACAT Locus tag: RBAM_012380 Name: uxaC Funciton: Uronate isomerase (EC 5.3.1.12) Locus tag: RBAM_012390 Name: exuM Funciton: Melibiose carrier protein, Na+/melibiose symporter Locus tag: RBAM_012400 Name: exuR Funciton: Transcriptional repressor of hexuronate utilization operon, LacI family Locus tag: RBAM_012410 Name: uxaB Funciton: Altronate oxidoreductase (EC 1.1.1.58) Locus tag: RBAM_012420 Name: uxaA Funciton: Altronate hydrolase (EC 4.2.1.7)
	RBAM_012380	uxaC	Uronate isomerase (EC 5.3.1.12)
	RBAM_012390	exuM	Melibiose carrier protein, Na+/melibiose symporter
	RBAM_012400	exuR	Transcriptional repressor of hexuronate utilization operon, LacI family
	RBAM_012410	uxaB	Altronate oxidoreductase (EC 1.1.1.58)
	RBAM_012420	uxaA	Altronate hydrolase (EC 4.2.1.7)
Position: -46 Score: 4.7 Sequence: GTGAAAGCGCTTACCA Locus tag: RBAM_036180 Name: citH Funciton: Ca2+/citrate complex secondary transporter
	RBAM_036180	citH	Ca2+/citrate complex secondary transporter
Position: -87 Score: 4.4 Sequence: TTAACAACGTTTACAT Locus tag: RBAM_020070 Name: cspD Funciton: Cold-shock protein, molecular chaperone, RNA-helicase co-factor
	RBAM_020070	cspD	Cold-shock protein, molecular chaperone, RNA-helicase co-factor
Position: -190 Score: 5 Sequence: TTGTAAGCGTATACAA Locus tag: RBAM_023500 Name: cccA Funciton: Membrane-attached cytochrome c550
	RBAM_023500	cccA	Membrane-attached cytochrome c550
Position: -44 Score: 5.2 Sequence: ATGAAAACGTTTACTA Locus tag: RBAM_018380 Name: yngI Funciton: Long-chain fatty-acid-CoA ligase (EC 6.2.1.3) Locus tag: RBAM_018370 Name: yngH Funciton: Biotin carboxylase of methylcrotonyl-CoA carboxylase (EC 6.3.4.14) Locus tag: RBAM_018360 Name: yngHB Funciton: Biotin carboxyl carrier protein of methylcrotonyl-CoA carboxylase ( EC:6.4.1.2 ) Locus tag: RBAM_018350 Name: yngG Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) Locus tag: RBAM_018340 Name: yngF Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) Locus tag: RBAM_018330 Name: yngE Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
	RBAM_018380	yngI	Long-chain fatty-acid-CoA ligase (EC 6.2.1.3)
	RBAM_018370	yngH	Biotin carboxylase of methylcrotonyl-CoA carboxylase (EC 6.3.4.14)
	RBAM_018360	yngHB	Biotin carboxyl carrier protein of methylcrotonyl-CoA carboxylase ( EC:6.4.1.2 )
	RBAM_018350	yngG	Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
	RBAM_018340	yngF	Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
	RBAM_018330	yngE	Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Position: -29 Score: 4.9 Sequence: ATGTAAGCGGATTCAA Locus tag: RBAM_010120 Name: yhaR Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
	RBAM_010120	yhaR	Enoyl-CoA hydratase (EC 4.2.1.17)
Position: -82 Score: 4.7 Sequence: ATGAAAACGGTTTCGT Locus tag: RBAM_024210 Name: manR Funciton: Transcriptional regulator of mannose utilization, BglG family
	RBAM_024210	manR	Transcriptional regulator of mannose utilization, BglG family
Position: -32 Score: 4.1 Sequence: TTGTAAACGAATACAC Locus tag: RBAM_001800 Name: mrp Funciton: Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like
	RBAM_001800	mrp	Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like
Position: -498 Score: 5.2 Sequence: ATGAAAGCGTATACAA Locus tag: RBAM_025370 Name: ilvB Funciton: Acetolactate synthase large subunit (EC 2.2.1.6) Locus tag: RBAM_025360 Name: ilvH Funciton: Acetolactate synthase small subunit (EC 2.2.1.6) Locus tag: RBAM_025350 Name: ilvC Funciton: Ketol-acid reductoisomerase (EC 1.1.1.86) Locus tag: RBAM_025340 Name: leuA Funciton: 2-isopropylmalate synthase (EC 2.3.3.13) Locus tag: RBAM_025330 Name: leuB Funciton: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) Locus tag: RBAM_025320 Name: leuC Funciton: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) Locus tag: RBAM_025310 Name: leuD Funciton: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
	RBAM_025370	ilvB	Acetolactate synthase large subunit (EC 2.2.1.6)
	RBAM_025360	ilvH	Acetolactate synthase small subunit (EC 2.2.1.6)
	RBAM_025350	ilvC	Ketol-acid reductoisomerase (EC 1.1.1.86)
	RBAM_025340	leuA	2-isopropylmalate synthase (EC 2.3.3.13)
	RBAM_025330	leuB	3-isopropylmalate dehydrogenase (EC 1.1.1.85)
	RBAM_025320	leuC	3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
	RBAM_025310	leuD	3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
Position: -196 Score: 5 Sequence: ATGAAAACGCTACCAA Locus tag: RBAM_007070 Name: gatC Funciton: Aspartyl (EC 6.3.5.6)/Glutamyl (EC 6.3.5.7) -tRNA amidotransferase subunit C Locus tag: RBAM_007080 Name: gatA Funciton: Aspartyl (EC 6.3.5.6)/Glutamyl (EC 6.3.5.7) -tRNA amidotransferase subunit A Locus tag: RBAM_007090 Name: gatB Funciton: Aspartyl (EC 6.3.5.6)/Glutamyl (EC 6.3.5.7) -tRNA amidotransferase subunit B
	RBAM_007070	gatC	Aspartyl (EC 6.3.5.6)/Glutamyl (EC 6.3.5.7) -tRNA amidotransferase subunit C
	RBAM_007080	gatA	Aspartyl (EC 6.3.5.6)/Glutamyl (EC 6.3.5.7) -tRNA amidotransferase subunit A
	RBAM_007090	gatB	Aspartyl (EC 6.3.5.6)/Glutamyl (EC 6.3.5.7) -tRNA amidotransferase subunit B
Position: 567 Score: 4.5 Sequence: TGGAAAGCGCTTACAC Locus tag: RBAM_031510 Name: sigL Funciton: DNA-directed RNA polymerase sigma subunit SigL
	RBAM_031510	sigL	DNA-directed RNA polymerase sigma subunit SigL
Position: -146 Score: 4.7 Sequence: TTGTAAGCGGTACCAA Locus tag: RBAM_026400 Name: ackA Funciton: Acetate kinase (EC 2.7.2.1)
	RBAM_026400	ackA	Acetate kinase (EC 2.7.2.1)
Position: 433 Score: 4.9 Sequence: ATGTAAGCGTTTGCTT Locus tag: RBAM_008300 Name: acoA Funciton: Acetoin dehydrogenase E1 component alpha-subunit (EC 1.2.4.-) Locus tag: RBAM_008310 Name: acoB Funciton: Acetoin dehydrogenase E1 component beta-subunit (EC 1.2.4.-) Locus tag: RBAM_008320 Name: acoC Funciton: Dihydrolipoamide acetyltransferase component (E2) of acetoin dehydrogenase complex (EC 2.3.1.-) Locus tag: RBAM_008330 Name: acoL Funciton: Dihydrolipoamide dehydrogenase of acetoin dehydrogenase (EC 1.8.1.4)
	RBAM_008300	acoA	Acetoin dehydrogenase E1 component alpha-subunit (EC 1.2.4.-)
	RBAM_008310	acoB	Acetoin dehydrogenase E1 component beta-subunit (EC 1.2.4.-)
	RBAM_008320	acoC	Dihydrolipoamide acetyltransferase component (E2) of acetoin dehydrogenase complex (EC 2.3.1.-)
	RBAM_008330	acoL	Dihydrolipoamide dehydrogenase of acetoin dehydrogenase (EC 1.8.1.4)
Position: -181 Score: 4.7 Sequence: ATGTAAGCGATTACTT Locus tag: RBAM_031490 Name: lutR Funciton: Lactate-responsive regulator, GntR family Locus tag: RBAM_031480 Name: null Funciton: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) Locus tag: RBAM_031470 Name: lutA Funciton: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit Locus tag: RBAM_031460 Name: lutB Funciton: Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit Locus tag: RBAM_031450 Name: lutC Funciton: Predicted L-lactate dehydrogenase, hypothetical protein subunit
	RBAM_031490	lutR	Lactate-responsive regulator, GntR family
	RBAM_031480		Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
	RBAM_031470	lutA	Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit
	RBAM_031460	lutB	Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit
	RBAM_031450	lutC	Predicted L-lactate dehydrogenase, hypothetical protein subunit
Position: -102 Score: 4.5 Sequence: TATAAAGCGTTTTCAA Locus tag: RBAM_026800 Name: acsA Funciton: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
	RBAM_026800	acsA	Acetyl-coenzyme A synthetase (EC 6.2.1.1)
Position: -118 Score: 4.9 Sequence: ATGTAAGCGTTAACAG Locus tag: RBAM_003280 Name: amyE Funciton: Alpha-amylase precursor
	RBAM_003280	amyE	Alpha-amylase precursor
Position: -43 Score: 4.9 Sequence: TTGTAAGCGTTTTTAT Locus tag: RBAM_031320 Name: araE Funciton: Arabinose-proton symporter
	RBAM_031320	araE	Arabinose-proton symporter
Position: -230 Score: 4.9 Sequence: ATGAAAGCGTTGGCAT Position: -34 Score: 4.5 Sequence: AAGAAATCGCTTTCAA Locus tag: RBAM_036190 Name: bglS Funciton: Endo-beta-1,3-1,4 glucanase (Licheninase) (EC 3.2.1.73)
	RBAM_036190	bglS	Endo-beta-1,3-1,4 glucanase (Licheninase) (EC 3.2.1.73)
Position: 411 Score: 4.8 Sequence: ATGAAAACGTTATCAC Locus tag: RBAM_025620 Name: lcfA Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
	RBAM_025620	lcfA	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -29 Score: 4.8 Sequence: ATGTAAACGTTATCAG Locus tag: RBAM_008360 Name: glvA Funciton: Maltose-6'-phosphate glucosidase (EC 3.2.1.122) Locus tag: RBAM_008370 Name: glvR Funciton: Transcriptional activator of maltose utilization, RpiR family Locus tag: RBAM_008380 Name: glvC Funciton: PTS system, maltose and glucose-specific IIC component (EC 2.7.1.69) / PTS system, maltose and glucose-specific IIB component (EC 2.7.1.69)
	RBAM_008360	glvA	Maltose-6'-phosphate glucosidase (EC 3.2.1.122)
	RBAM_008370	glvR	Transcriptional activator of maltose utilization, RpiR family
	RBAM_008380	glvC	PTS system, maltose and glucose-specific IIC component (EC 2.7.1.69) / PTS system, maltose and glucose-specific IIB component (EC 2.7.1.69)
Position: -75 Score: 5.1 Sequence: ATGAAAGCGATTTCAT Locus tag: RBAM_035790 Name: licB Funciton: PTS system, lichenan-specific IIB component (EC 2.7.1.69); PTS system, cellobiose-specific IIB component (EC 2.7.1.69) Locus tag: RBAM_035780 Name: licC Funciton: PTS system, lichenan-specific IIC component (EC 2.7.1.69) Locus tag: RBAM_035770 Name: licA Funciton: PTS system, lichenan-specific IIA component (EC 2.7.1.69) Locus tag: RBAM_035760 Name: licH Funciton: 6-phospho-beta-glucosidase (EC 3.2.1.86)
	RBAM_035790	licB	PTS system, lichenan-specific IIB component (EC 2.7.1.69); PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
	RBAM_035780	licC	PTS system, lichenan-specific IIC component (EC 2.7.1.69)
	RBAM_035770	licA	PTS system, lichenan-specific IIA component (EC 2.7.1.69)
	RBAM_035760	licH	6-phospho-beta-glucosidase (EC 3.2.1.86)
Position: -28 Score: 4.5 Sequence: ATGAATACGTTTCCAA Locus tag: RBAM_014120 Name: fruR Funciton: Transcriptional regulator of fructose utilization, DeoR family Locus tag: RBAM_014130 Name: fruK Funciton: Tagatose-6-phosphate kinase (EC 2.7.1.144) / 1-phosphofructokinase (EC 2.7.1.56) Locus tag: RBAM_014140 Name: fruA Funciton: PTS system fructose-specific enzyme II, ABC subunits (EC 2.7.1.69)
	RBAM_014120	fruR	Transcriptional regulator of fructose utilization, DeoR family
	RBAM_014130	fruK	Tagatose-6-phosphate kinase (EC 2.7.1.144) / 1-phosphofructokinase (EC 2.7.1.56)
	RBAM_014140	fruA	PTS system fructose-specific enzyme II, ABC subunits (EC 2.7.1.69)
Position: -32 Score: 5 Sequence: AAGAAAGCGTTTACAA Locus tag: RBAM_036040 Name: msmX Funciton: Maltose/maltodextrin transport ATP-binding protein (EC 3.6.3.19)
	RBAM_036040	msmX	Maltose/maltodextrin transport ATP-binding protein (EC 3.6.3.19)
Position: -33 Score: 5 Sequence: ATGTAAACGGTTACAT Locus tag: RBAM_033080 Name: rbsR Funciton: Ribose operon repressor, LacI family Locus tag: RBAM_033090 Name: rbsK Funciton: Ribokinase (EC 2.7.1.15) Locus tag: RBAM_033100 Name: rbsD Funciton: Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) Locus tag: RBAM_033110 Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) Locus tag: RBAM_033120 Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) Locus tag: RBAM_033130 Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
	RBAM_033080	rbsR	Ribose operon repressor, LacI family
	RBAM_033090	rbsK	Ribokinase (EC 2.7.1.15)
	RBAM_033100	rbsD	Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
	RBAM_033110	rbsA	Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
	RBAM_033120	rbsC	Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
	RBAM_033130	rbsB	Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Position: -166 Score: 5.3 Sequence: ATGAAAGCGTTTTCTT Locus tag: RBAM_026150 Name: phoP Funciton: Alkaline phosphatase synthesis transcriptional regulatory protein PhoP Locus tag: RBAM_026140 Name: phoR Funciton: Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3)
	RBAM_026150	phoP	Alkaline phosphatase synthesis transcriptional regulatory protein PhoP
	RBAM_026140	phoR	Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3)
Position: 318 Score: 4 Sequence: GTGAAAACGCTTGCGG Locus tag: RBAM_007970 Name: treP Funciton: PTS system, trehalose-specific enzyme II, BC component (EC 2.7.1.69) Locus tag: RBAM_007980 Name: treA Funciton: Trehalose-6-phosphate hydrolase (EC 3.2.1.93) Locus tag: RBAM_007990 Name: treR Funciton: Transcriptional repressor of trehalose operon, GntR family
	RBAM_007970	treP	PTS system, trehalose-specific enzyme II, BC component (EC 2.7.1.69)
	RBAM_007980	treA	Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
	RBAM_007990	treR	Transcriptional repressor of trehalose operon, GntR family
Position: -177 Score: 4.5 Sequence: ATGTAACCGTTTGCTT Position: -102 Score: 4.8 Sequence: TTGTAAGCGTTTAATT Position: 67 Score: 4.5 Sequence: ATGAAGACGTTATCAA Locus tag: RBAM_036780 Name: iolA Funciton: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) Locus tag: RBAM_036770 Name: iolB Funciton: 5-deoxy-glucuronate isomerase (EC 5.3.1.-)
	RBAM_036780	iolA	Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27)
	RBAM_036770	iolB	5-deoxy-glucuronate isomerase (EC 5.3.1.-)
Position: -172 Score: 5.1 Sequence: ATGAAAACGTTGTCAT Locus tag: RBAM_036760 Name: iolC Funciton: 5-keto-2-deoxygluconokinase (EC 2.7.1.92) Locus tag: RBAM_036750 Name: iolD Funciton: Epi-inositol hydrolase (EC 3.7.1.-) Locus tag: RBAM_036740 Name: iolE Funciton: Inosose dehydratase (EC 4.2.1.44) Locus tag: RBAM_036730 Name: iolF Funciton: Minor myo-inositol transporter Locus tag: RBAM_036720 Name: iolG Funciton: Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18) Locus tag: RBAM_036710 Name: iolH Funciton: Xylose isomerase (EC 5.3.1.5) Locus tag: RBAM_036700 Name: iolI Funciton: Inosose isomerase (EC 5.3.99.-) Locus tag: RBAM_036690 Name: iolJ Funciton: Fructose-bisphosphate aldolase class II (EC 4.1.2.13)
	RBAM_036760	iolC	5-keto-2-deoxygluconokinase (EC 2.7.1.92)
	RBAM_036750	iolD	Epi-inositol hydrolase (EC 3.7.1.-)
	RBAM_036740	iolE	Inosose dehydratase (EC 4.2.1.44)
	RBAM_036730	iolF	Minor myo-inositol transporter
	RBAM_036720	iolG	Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18)
	RBAM_036710	iolH	Xylose isomerase (EC 5.3.1.5)
	RBAM_036700	iolI	Inosose isomerase (EC 5.3.99.-)
	RBAM_036690	iolJ	Fructose-bisphosphate aldolase class II (EC 4.1.2.13)
Position: -33 Score: 5.1 Sequence: ATGTAAGCGTATTCAT Locus tag: RBAM_007810 Name: citM Funciton: Mg(2+) Citrate transporter (TC 2.A.11.1.1)
	RBAM_007810	citM	Mg(2+) Citrate transporter (TC 2.A.11.1.1)
Position: -45 Score: 4.9 Sequence: TTGAAAGCGTTTTAAG Locus tag: RBAM_036390 Name: abnB Funciton: Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55)
	RBAM_036390	abnB	Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55)
Position: -104 Score: 5.1 Sequence: TTGAAAGCGCTTTTAT Locus tag: RBAM_017320 Name: xynP Funciton: Putative H+-xyloside symporter Locus tag: RBAM_017330 Name: xynB Funciton: Beta-xylosidase (EC 3.2.1.37)
	RBAM_017320	xynP	Putative H+-xyloside symporter
	RBAM_017330	xynB	Beta-xylosidase (EC 3.2.1.37)
Position: -37 Score: 4.5 Sequence: ATGAAAACGCTTTTCT Locus tag: RBAM_025750 Name: glcD Funciton: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD Locus tag: RBAM_025760 Name: glcF Funciton: Predicted glycolate dehydrogenase, 2-subunit type (EC 1.1.99.14), iron-sulfur subunit GlcF
	RBAM_025750	glcD	Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
	RBAM_025760	glcF	Predicted glycolate dehydrogenase, 2-subunit type (EC 1.1.99.14), iron-sulfur subunit GlcF
Position: -99 Score: 4.6 Sequence: AAGAAAACGCATACAT Locus tag: RBAM_013910 Name: ccpC Funciton: Transcriptional regulators, LysR family
	RBAM_013910	ccpC	Transcriptional regulators, LysR family
Position: -114 Score: 4.6 Sequence: ATGTAAGCATTTTCTT Locus tag: RBAM_026180 Name: citZ Funciton: Citrate synthase (si) (EC 2.3.3.1) Locus tag: RBAM_026170 Name: icd Funciton: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) Locus tag: RBAM_026160 Name: mdh Funciton: Malate dehydrogenase (EC 1.1.1.37)
	RBAM_026180	citZ	Citrate synthase (si) (EC 2.3.3.1)
	RBAM_026170	icd	Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
	RBAM_026160	mdh	Malate dehydrogenase (EC 1.1.1.37)
Position: -42 Score: 5.2 Sequence: TTGTAAGCGCTTACTA Locus tag: RBAM_018230 Name: yxjC Funciton: D-beta-hydroxybutyrate permease Locus tag: RBAM_018220 Name: scoA Funciton: Butyrate-acetoacetate CoA-transferase subunit A (EC 2.8.3.9) Locus tag: RBAM_018210 Name: scoB Funciton: 3-oxoacid CoA-transferase( EC:2.8.3.5 ) Locus tag: RBAM_018200 Name: yxjF Funciton: D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30)
	RBAM_018230	yxjC	D-beta-hydroxybutyrate permease
	RBAM_018220	scoA	Butyrate-acetoacetate CoA-transferase subunit A (EC 2.8.3.9)
	RBAM_018210	scoB	3-oxoacid CoA-transferase( EC:2.8.3.5 )
	RBAM_018200	yxjF	D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30)
Position: -43 Score: 4.6 Sequence: GTGTAAGCGTTATCTT Locus tag: RBAM_022450 Name: mmgA Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) Locus tag: RBAM_022440 Name: mmgB Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) Locus tag: RBAM_022430 Name: mmgC Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) Locus tag: RBAM_022420 Name: mmgD Funciton: Citrate synthase (si) (EC 2.3.3.1) Locus tag: RBAM_022410 Name: mmgE Funciton: 2-methylcitrate dehydratase (EC 4.2.1.79) Locus tag: RBAM_022400 Name: prpB Funciton: Methylisocitrate lyase (EC 4.1.3.30)
	RBAM_022450	mmgA	3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
	RBAM_022440	mmgB	3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
	RBAM_022430	mmgC	Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	RBAM_022420	mmgD	Citrate synthase (si) (EC 2.3.3.1)
	RBAM_022410	mmgE	2-methylcitrate dehydratase (EC 4.2.1.79)
	RBAM_022400	prpB	Methylisocitrate lyase (EC 4.1.3.30)
Position: -54 Score: 5.3 Sequence: TTGAAAACGCTATCAT Locus tag: RBAM_004800 Name: dctA Funciton: C4-dicarboxylate transport protein
	RBAM_004800	dctA	C4-dicarboxylate transport protein
Position: -99 Score: 5 Sequence: TTGAAAGCGCTATAAT Locus tag: RBAM_034850 Name: pta Funciton: Phosphate acetyltransferase (EC 2.3.1.8)
	RBAM_034850	pta	Phosphate acetyltransferase (EC 2.3.1.8)
Position: -257 Score: 4.5 Sequence: ATGTAAGCGTTGACAC Locus tag: RBAM_036360 Name: bglP Funciton: PTS system, aryl-phospho-beta-glucoside-specific component IIABC (EC 2.7.1.69) Locus tag: RBAM_036350 Name: bglH Funciton: Aryl-phospho-beta-D-glucosidase (EC 3.2.1.86)
	RBAM_036360	bglP	PTS system, aryl-phospho-beta-glucoside-specific component IIABC (EC 2.7.1.69)
	RBAM_036350	bglH	Aryl-phospho-beta-D-glucosidase (EC 3.2.1.86)
Position: -143 Score: 4.3 Sequence: ATGTACACGTTTTCTT Locus tag: RBAM_025520 Name: sdhC Funciton: Succinate dehydrogenase cytochrome b558 subunit Locus tag: RBAM_025510 Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Locus tag: RBAM_025500 Name: sdhB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) Locus tag: RBAM_025490 Name: ysmA Funciton: 4-hydroxybenzoyl-CoA thioesterase, putative
	RBAM_025520	sdhC	Succinate dehydrogenase cytochrome b558 subunit
	RBAM_025510	sdhA	Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
	RBAM_025500	sdhB	Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
	RBAM_025490	ysmA	4-hydroxybenzoyl-CoA thioesterase, putative
Position: -175 Score: 4.7 Sequence: ACGAAAGCGCTATCAT Position: -151 Score: 5 Sequence: ATGAAAGCGCATTAAA Locus tag: RBAM_035290 Name: sacP Funciton: PTS sucrose-specific enzyme IIBC component Locus tag: RBAM_035280 Name: sacA Funciton: Sucrose-6-phosphate hydrolase (EC 3.2.1.26)
	RBAM_035290	sacP	PTS sucrose-specific enzyme IIBC component
	RBAM_035280	sacA	Sucrose-6-phosphate hydrolase (EC 3.2.1.26)
Position: -132 Score: 4.9 Sequence: TTGTAAACGCTTTAAT Locus tag: RBAM_014970 Name: apbA Funciton: 2-dehydropantoate 2-reductase (EC 1.1.1.169) Locus tag: RBAM_014980 Name: yllA Funciton: Hypothetical membrane spanning protein
	RBAM_014970	apbA	2-dehydropantoate 2-reductase (EC 1.1.1.169)
	RBAM_014980	yllA	Hypothetical membrane spanning protein
Position: -200 Score: 4.3 Sequence: CTTAAAGCGTTTACAT Position: -162 Score: 4.9 Sequence: AAGAAAGCGCTATCAT Locus tag: RBAM_002610 Name: glpT Funciton: MFS family major facilitator transporter, glycerol-3-phosphate:cation symporter Locus tag: RBAM_002600 Name: glpQ Funciton: Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46)
	RBAM_002610	glpT	MFS family major facilitator transporter, glycerol-3-phosphate:cation symporter
	RBAM_002600	glpQ	Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46)
Position: -229 Score: 4.9 Sequence: ATAAAAACGCTTACAA Position: -59 Score: 4.6 Sequence: ATGAAAGGGCTTACTA Locus tag: RBAM_031330 Name: araR Funciton: Transcriptional repressor of arabinoside utilization operon, GntR family
	RBAM_031330	araR	Transcriptional repressor of arabinoside utilization operon, GntR family
Position: -101 Score: 4.7 Sequence: TTGGAAGCGTTTTTAT Locus tag: RBAM_019130 Name: odhA Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) Locus tag: RBAM_019120 Name: odhB Funciton: 2-oxoglutarate dehydrogenase E2 component
	RBAM_019130	odhA	2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
	RBAM_019120	odhB	2-oxoglutarate dehydrogenase E2 component
Position: 15 Score: 4.3 Sequence: AAGAAAGCGTTTGCTG Locus tag: RBAM_035460 Name: galK Funciton: Galactokinase (EC 2.7.1.6) Locus tag: RBAM_035450 Name: galT Funciton: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
	RBAM_035460	galK	Galactokinase (EC 2.7.1.6)
	RBAM_035450	galT	Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
Position: -37 Score: 4.5 Sequence: TTGAAAGCCTATACAT Locus tag: RBAM_020890 Name: ndk Funciton: Nucleoside diphosphate kinase (EC 2.7.4.6)
	RBAM_020890	ndk	Nucleoside diphosphate kinase (EC 2.7.4.6)
Position: -98 Score: 4.4 Sequence: TGTAAAGCGCTTACAA Locus tag: RBAM_025570 Name: xsa Funciton: Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55)
	RBAM_025570	xsa	Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55)
Position: -32 Score: 4.4 Sequence: ATGCAAGCGCTTTATT Locus tag: RBAM_025860 Name: araA Funciton: L-arabinose isomerase (EC 5.3.1.4) Locus tag: RBAM_025850 Name: araB Funciton: Ribulokinase (EC 2.7.1.16) Locus tag: RBAM_025840 Name: araD Funciton: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) Locus tag: RBAM_025830 Name: araL Funciton: Arabinose operon protein AraL Locus tag: RBAM_025820 Name: araM Funciton: Glycerol dehydrogenase (EC 1.1.1.6) Locus tag: RBAM_025810 Name: araN Funciton: Alpha-arabinosides ABC transport system, substrate-binding protein Locus tag: RBAM_025800 Name: araP Funciton: Alpha-arabinosides ABC transport system, permease protein 1 Locus tag: RBAM_025790 Name: araQ Funciton: Alpha-arabinosides ABC transport system, permease protein 2 Locus tag: RBAM_025780 Name: abfA Funciton: Alpha-N-arabinofuranosidase (EC 3.2.1.55)
	RBAM_025860	araA	L-arabinose isomerase (EC 5.3.1.4)
	RBAM_025850	araB	Ribulokinase (EC 2.7.1.16)
	RBAM_025840	araD	L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
	RBAM_025830	araL	Arabinose operon protein AraL
	RBAM_025820	araM	Glycerol dehydrogenase (EC 1.1.1.6)
	RBAM_025810	araN	Alpha-arabinosides ABC transport system, substrate-binding protein
	RBAM_025800	araP	Alpha-arabinosides ABC transport system, permease protein 1
	RBAM_025790	araQ	Alpha-arabinosides ABC transport system, permease protein 2
	RBAM_025780	abfA	Alpha-N-arabinofuranosidase (EC 3.2.1.55)
Position: -95 Score: 4.3 Sequence: ATGAAAGCGTTACACT Locus tag: RBAM_014810 Name: ylbB Funciton: CBS domain protein Locus tag: RBAM_014820 Name: ylbC Funciton: Uncharacterized secreted protein with SCP domain
	RBAM_014810	ylbB	CBS domain protein
	RBAM_014820	ylbC	Uncharacterized secreted protein with SCP domain
Position: -91 Score: 4.8 Sequence: TTGAAAACGCTTACTC Locus tag: RBAM_027180 Name: msmR Funciton: Transcriptional regulator of alpha-galactoside utilization, LacI family Locus tag: RBAM_027190 Name: msmE Funciton: Multiple sugar ABC transporter, substrate-binding protein Locus tag: RBAM_027200 Name: msmF Funciton: Multiple sugar ABC transporter, membrane-spanning permease protein MsmF Locus tag: RBAM_027210 Name: msmG Funciton: Multiple sugar ABC transporter, membrane-spanning permease protein MsmG Locus tag: RBAM_027220 Name: melA Funciton: Alpha-galactosidase (EC 3.2.1.22)
	RBAM_027180	msmR	Transcriptional regulator of alpha-galactoside utilization, LacI family
	RBAM_027190	msmE	Multiple sugar ABC transporter, substrate-binding protein
	RBAM_027200	msmF	Multiple sugar ABC transporter, membrane-spanning permease protein MsmF
	RBAM_027210	msmG	Multiple sugar ABC transporter, membrane-spanning permease protein MsmG
	RBAM_027220	melA	Alpha-galactosidase (EC 3.2.1.22)
Position: 0 Score: 4.3 Sequence: ATGAAAGCGGTTCTAG Locus tag: RBAM_017960 Name: yjmD Funciton: Oxidoreductase, zinc-binding dehydrogenase family (EC 1.1.1.-) Locus tag: RBAM_017970 Name: kdgA Funciton: 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) Locus tag: RBAM_017980 Name: uxuA Funciton: Mannonate dehydratase (EC 4.2.1.8) Locus tag: RBAM_017990 Name: yjmF Funciton: D-mannonate oxidoreductase (EC 1.1.1.57) Locus tag: RBAM_018000 Name: endR Funciton: Probable HTH-type transcriptional regulator endR, LacI family Locus tag: RBAM_018010 Name: exuT Funciton: Hexuronate transporter
	RBAM_017960	yjmD	Oxidoreductase, zinc-binding dehydrogenase family (EC 1.1.1.-)
	RBAM_017970	kdgA	4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
	RBAM_017980	uxuA	Mannonate dehydratase (EC 4.2.1.8)
	RBAM_017990	yjmF	D-mannonate oxidoreductase (EC 1.1.1.57)
	RBAM_018000	endR	Probable HTH-type transcriptional regulator endR, LacI family
	RBAM_018010	exuT	Hexuronate transporter
Position: -80 Score: 5.1 Sequence: ATGTAAGCGTTTCCAA Locus tag: RBAM_035650 Name: licC2 Funciton: PTS system, lichenan-specific IIC component (EC 2.7.1.69)
	RBAM_035650	licC2	PTS system, lichenan-specific IIC component (EC 2.7.1.69)

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of CcpA in Bacillus amyloliquefaciens FZB42

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --