Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LexA in Bacillus amyloliquefaciens FZB42

Properties
Regulator type: Transcription factor
TF locus tag: RBAM_017650
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Bacillales
Statistics of regulated genes:
- Genes 36
- Operons 21
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 206 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -28
Score: 4.3
Sequence: CAGAACAAATGTTCCC
Locus tag: RBAM_021830
Name: yqjW
Funciton: DNA polymerase IV (EC 2.7.7.7)
RBAM_021830
yqjW
DNA polymerase IV (EC 2.7.7.7)
Position: -243
Score: 4.1
Sequence: TCGAGCAAGAGTTCTT
Locus tag: RBAM_022900
Name: yqhH
Funciton: Uncharacterized ATP-dependent helicase YqhH, SNF2 family
Locus tag: RBAM_022910
Name: yqhG
Funciton: Hypothetical protein
RBAM_022900
yqhH
Uncharacterized ATP-dependent helicase YqhH, SNF2 family
RBAM_022910
yqhG
Hypothetical protein
Position: -177
Score: 4.7
Sequence: CAGAACATAAATTCGT
Locus tag: RBAM_021430
Name: ypuD
Funciton: Hypothetical protein
RBAM_021430
ypuD
Hypothetical protein
Position: -426
Score: 5.1
Sequence: ACAAACATAGGTTCGA
Position: -396
Score: 4.4
Sequence: AGAAACGTTTGTTCGT
Position: -359
Score: 4.1
Sequence: GCGAACAAACATTCTT
Locus tag: RBAM_017670
Name: yneB
Funciton: Site-specific recombinase, DNA invertase
Locus tag: RBAM_017680
Name: ynzC
Funciton: Hypothetical protein
Locus tag: RBAM_017690
Name: tkt
Funciton: Transketolase (EC 2.2.1.1)
Locus tag: RBAM_017700
Name: yneE
Funciton: Hypothetical protein
Locus tag: RBAM_017710
Name: yneF
Funciton: Hypothetical protein
RBAM_017670
yneB
Site-specific recombinase, DNA invertase
RBAM_017680
ynzC
Hypothetical protein
RBAM_017690
tkt
Transketolase (EC 2.2.1.1)
RBAM_017700
yneE
Hypothetical protein
RBAM_017710
yneF
Hypothetical protein
Position: -111
Score: 4.2
Sequence: GGGAACGTATGTTTGT
Locus tag: RBAM_013560
Name: ykvR
Funciton: Hypothetical protein
RBAM_013560
ykvR
Hypothetical protein
Position: -40
Score: 4.7
Sequence: AAGAACAAAGGTTCTC
Locus tag: RBAM_010690
Name: yhjD
Funciton: Hypothetical protein
RBAM_010690
yhjD
Hypothetical protein
Position: -62
Score: 5.2
Sequence: AAAAACAAATGTTCGT
Locus tag: RBAM_025550
Name: uvrC
Funciton: Excinuclease ABC subunit C
RBAM_025550
uvrC
Excinuclease ABC subunit C
Position: -90
Score: 5
Sequence: TCGAACTTTAGTTCGT
Locus tag: RBAM_032310
Name: uvrB
Funciton: Excinuclease ABC subunit B
Locus tag: RBAM_032300
Name: uvrA
Funciton: Excinuclease ABC subunit A
RBAM_032310
uvrB
Excinuclease ABC subunit B
RBAM_032300
uvrA
Excinuclease ABC subunit A
Position: -144
Score: 4.4
Sequence: CAGAACGATTGTTCTT
Locus tag: RBAM_023990
Name: sda
Funciton: Sporulation inhibitor sda
RBAM_023990
sda
Sporulation inhibitor sda
Position: -86
Score: 4.7
Sequence: CCGAATATGCGTTCGC
Locus tag: RBAM_016780
Name: recA
Funciton: Recombination protein A
RBAM_016780
recA
Recombination protein A
Position: -243
Score: 4.3
Sequence: GCGAACTCATGTTCTT
Locus tag: RBAM_017900
Name: parE
Funciton: Topoisomerase IV subunit B (EC 5.99.1.-)
Locus tag: RBAM_017910
Name: parC
Funciton: Topoisomerase IV subunit A (EC 5.99.1.-)
RBAM_017900
parE
Topoisomerase IV subunit B (EC 5.99.1.-)
RBAM_017910
parC
Topoisomerase IV subunit A (EC 5.99.1.-)
Position: -140
Score: 4.5
Sequence: AAGAATGTTTGTTCGC
Position: -103
Score: 4.4
Sequence: ACGAACAAACGTTTCT
Position: -73
Score: 5.1
Sequence: TCGAACCTATGTTTGT
Locus tag: RBAM_017650
Name: lexA
Funciton: SOS-response transcriptional repressor
RBAM_017650
lexA
SOS-response transcriptional repressor
Position: -282
Score: 4.5
Sequence: AGGAATATTTGTTCGG
Locus tag: RBAM_020950
Name: hupA
Funciton: DNA-binding protein HU 1
RBAM_020950
hupA
DNA-binding protein HU 1
Position: -69
Score: 4.5
Sequence: AAGAACATTTGTTTCT
Locus tag: RBAM_026280
Name: dnaE
Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7)
Locus tag: RBAM_026270
Name: ytsJ
Funciton: NADP-dependent malic enzyme (EC 1.1.1.40)
RBAM_026280
dnaE
DNA polymerase III alpha subunit (EC 2.7.7.7)
RBAM_026270
ytsJ
NADP-dependent malic enzyme (EC 1.1.1.40)
Position: -38
Score: 4.1
Sequence: AGGAACGTACGTTCTG
Locus tag: RBAM_037680
Name: dinB
Funciton: Nuclease inhibitor
RBAM_037680
dinB
Nuclease inhibitor
Position: -146
Score: 4.5
Sequence: ACGAACAAAAGTTCCA
Locus tag: RBAM_017070
Name: aprX
Funciton: Alkaline serine protease
RBAM_017070
aprX
Alkaline serine protease
Position: -70
Score: 3.9
Sequence: CAGAACGTGCATTCGT
Locus tag: RBAM_010150
Name: yhaO
Funciton: DNA repair exonuclease family protein YhaO
Locus tag: RBAM_010160
Name: yhaN
Funciton: DNA double-strand break repair rad50 ATPase
Locus tag: RBAM_010170
Name: yhaM
Funciton: 3'-5' exoribonuclease yhaM (EC 3.1.-.-)
Locus tag: RBAM_010180
Name: yhaL
Funciton: Conserved hypothetical protein
RBAM_010150
yhaO
DNA repair exonuclease family protein YhaO
RBAM_010160
yhaN
DNA double-strand break repair rad50 ATPase
RBAM_010170
yhaM
3'-5' exoribonuclease yhaM (EC 3.1.-.-)
RBAM_010180
yhaL
Conserved hypothetical protein
Position: -80
Score: 4.7
Sequence: AGAAACAAATGTTCTT
Locus tag: RBAM_026290
Name: ytrH
Funciton: Sporulation membrane protein
Locus tag: RBAM_026300
Name: ytrI
Funciton: Sporulation membrane protein
RBAM_026290
ytrH
Sporulation membrane protein
RBAM_026300
ytrI
Sporulation membrane protein
Position: -32
Score: 5.2
Sequence: TAGAACATATGTTTGA
Locus tag: RBAM_007010
Name: pcrA
Funciton: ATP-dependent DNA helicase
Locus tag: RBAM_007020
Name: ligA
Funciton: NAD-dependent DNA ligase
Locus tag: RBAM_007030
Name: yerH
Funciton: Putative lipoprotein
RBAM_007010
pcrA
ATP-dependent DNA helicase
RBAM_007020
ligA
NAD-dependent DNA ligase
RBAM_007030
yerH
Putative lipoprotein
Position: -128
Score: 4.4
Sequence: GAGAACCTTTGTTCTT
Locus tag: RBAM_010700
Name: yhjE
Funciton: Alkaline phosphatase like protein
Locus tag: RBAM_010710
Name: sipV
Funciton: Signal peptidase I (EC 3.4.21.89)
RBAM_010700
yhjE
Alkaline phosphatase like protein
RBAM_010710
sipV
Signal peptidase I (EC 3.4.21.89)
Position: -30
Score: 5.4
Sequence: AAGAACATATGTTCGA
Locus tag: RBAM_012500
Name: xkdA
Funciton: Phage-like element PBSX protein xkdA
RBAM_012500
xkdA
Phage-like element PBSX protein xkdA
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