Regulon of CodY in Bacillus amyloliquefaciens FZB42
| Regulator type: | Transcription factor |
| TF locus tag: | RBAM_016000 |
| Regulator family: | CodY |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Guanosine triphosphate; Branched-chain amino acids |
| Regulog: | CodY - Bacillales |
| Statistics of regulated genes: | |
| - Genes | 146 |
| - Operons | 70 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By TF family - CodY
- By effector - Guanosine triphosphate
- By effector - Branched-chain amino acids
- By pathway - Amino acid metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -137
Score: 4.5 Sequence: AATATTCAAAAAAAA
Locus tag: RBAM_016830
Name: tdh Funciton: L-threonine 3-dehydrogenase (EC 1.1.1.103)
Locus tag: RBAM_016840
Name: kbl Funciton: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) |
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tdh
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L-threonine 3-dehydrogenase (EC 1.1.1.103)
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kbl
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2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
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Position: -464
Score: 4.7 Sequence: AATTGTCTAATAATT
Locus tag: RBAM_025370
Name: ilvB Funciton: Acetolactate synthase large subunit (EC 2.2.1.6)
Locus tag: RBAM_025360
Name: ilvH Funciton: Acetolactate synthase small subunit (EC 2.2.1.6)
Locus tag: RBAM_025350
Name: ilvC Funciton: Ketol-acid reductoisomerase (EC 1.1.1.86)
Locus tag: RBAM_025340
Name: leuA Funciton: 2-isopropylmalate synthase (EC 2.3.3.13)
Locus tag: RBAM_025330
Name: leuB Funciton: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
Locus tag: RBAM_025320
Name: leuC Funciton: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
Locus tag: RBAM_025310
Name: leuD Funciton: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
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ilvB
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Acetolactate synthase large subunit (EC 2.2.1.6)
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ilvH
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Acetolactate synthase small subunit (EC 2.2.1.6)
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ilvC
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Ketol-acid reductoisomerase (EC 1.1.1.86)
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leuA
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2-isopropylmalate synthase (EC 2.3.3.13)
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leuB
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3-isopropylmalate dehydrogenase (EC 1.1.1.85)
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leuC
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3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
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leuD
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3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
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Position: -398
Score: 4.4 Sequence: AATATTTTTAAAAAT
Locus tag: RBAM_003650
Name: srfAA Funciton: Surfactin synthetase subunit 1
Locus tag: RBAM_003660
Name: srfAB Funciton: Surfactin synthetase subunit 2
Locus tag: RBAM_003670
Name: comS Funciton: Regulator of genetic competence |
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srfAA
|
Surfactin synthetase subunit 1
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srfAB
|
Surfactin synthetase subunit 2
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comS
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Regulator of genetic competence
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Position: -73
Score: 4.6 Sequence: TATATTTTAAAAATT
Locus tag: RBAM_026800
Name: acsA Funciton: Acetyl-coenzyme A synthetase (EC 6.2.1.1) |
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acsA
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Acetyl-coenzyme A synthetase (EC 6.2.1.1)
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Position: -280
Score: 4.6 Sequence: TTTTTTCTGAAAAAT
Locus tag: RBAM_019340
Name: yodF Funciton: SSS family solute:sodium (Na+) symporter |
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yodF
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SSS family solute:sodium (Na+) symporter
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Position: -172
Score: 4.6 Sequence: ATTTATCAGAAAATA
Locus tag: RBAM_026400
Name: ackA Funciton: Acetate kinase (EC 2.7.2.1) |
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ackA
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Acetate kinase (EC 2.7.2.1)
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Position: -186
Score: 4.4 Sequence: TATTTTATAAAAATA
Locus tag: RBAM_016820
Name: spoVS Funciton: Stage V sporulation protein required for dehydratation of the spore core and assembly of the coat (SpoVS) |
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spoVS
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Stage V sporulation protein required for dehydratation of the spore core and assembly of the coat (SpoVS)
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Position: -77
Score: 4.7 Sequence: AATTGTGAGAAAATT
Locus tag: RBAM_017800
Name: citB Funciton: Aconitate hydratase (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) |
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citB
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Aconitate hydratase (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
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Position: -103
Score: 4.8 Sequence: AAATTTCAGAAAATA
Locus tag: RBAM_029670
Name: frlB Funciton: Fructoselysine 6-phosphate deglycase (EC 3.5.-.-)
Locus tag: RBAM_029660
Name: frlO Funciton: Putative fructoselysine ABC transporter, periplasmic ligand binding protein
Locus tag: RBAM_029650
Name: yurN Funciton: Putative fructoselysine ABC transporter, permease
Locus tag: RBAM_029640
Name: yurM Funciton: Putative fructoselysine ABC transporter, permease
Locus tag: RBAM_029630
Name: frlD Funciton: Fructoselysine kinase |
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frlB
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Fructoselysine 6-phosphate deglycase (EC 3.5.-.-)
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frlO
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Putative fructoselysine ABC transporter, periplasmic ligand binding protein
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yurN
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Putative fructoselysine ABC transporter, permease
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yurM
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Putative fructoselysine ABC transporter, permease
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frlD
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Fructoselysine kinase
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Position: -109
Score: 4.4 Sequence: AATTTTTAGATTTTT
Locus tag: RBAM_003510
Name: nasD Funciton: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Locus tag: RBAM_003500
Name: nasE Funciton: Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
Locus tag: RBAM_003490
Name: nasF Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75) |
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nasD
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Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
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nasE
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Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
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nasF
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Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)
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Position: -100
Score: 4.7 Sequence: AATTTTCAAAGAATT
Locus tag: RBAM_017250
Name: glnR Funciton: Transcriptional regulator of nitrogen excess response, MerR family
Locus tag: RBAM_017260
Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2) |
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glnR
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Transcriptional regulator of nitrogen excess response, MerR family
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glnA
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Glutamine synthetase type I (EC 6.3.1.2)
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Position: -84
Score: 5 Sequence: AATTTTCCGAAAATT
Locus tag: RBAM_012430
Name: yjnA Funciton: Putative integral membrane protein |
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yjnA
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Putative integral membrane protein
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Position: -182
Score: 4.6 Sequence: TATTTTCTGAATAGT
Locus tag: RBAM_003260
Name: ycgA Funciton: Putative integral inner membrane protein |
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ycgA
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Putative integral inner membrane protein
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Position: -104
Score: 4.6 Sequence: ACTATTCAGAAAATA
Locus tag: RBAM_003250
Name: amhX Funciton: Amidohydrolase amhX (EC 3.5.1.-) |
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amhX
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Amidohydrolase amhX (EC 3.5.1.-)
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Position: -185
Score: 4.5 Sequence: TATTTTTAAATAATT
Locus tag: RBAM_005540
Name: cotR Funciton: Putative sporulation hydrolase (EC=3.1.1.-) |
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cotR
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Putative sporulation hydrolase (EC=3.1.1.-)
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Position: -76
Score: 4.3 Sequence: AATTTTTTAAAAACA
Locus tag: RBAM_020410
Name: yppF Funciton: Hypothetical protein |
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yppF
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Hypothetical protein
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Position: -67
Score: 4.6 Sequence: AATATTTAAAAAATA
Locus tag: RBAM_009690
Name: citR Funciton: Transcriptional regulator of citrate synthase, LysR family |
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citR
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Transcriptional regulator of citrate synthase, LysR family
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Position: -188
Score: 4.4 Sequence: TTTATTCTGAAAAAT
Locus tag: RBAM_036120
Name: metE2 Funciton: Methionine synthase II (cobalamin-independent) |
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metE2
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Methionine synthase II (cobalamin-independent)
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Position: -56
Score: 4.7 Sequence: TATTATCTGACAATT
Position: -41
Score: 4.6 Sequence: AATTGACAGAATATT
Locus tag: RBAM_026530
Name: braB Funciton: Branched-chain amino acid transport system carrier protein |
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braB
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Branched-chain amino acid transport system carrier protein
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Position: -55
Score: 4.5 Sequence: TATTTTCTGACAAGT
Locus tag: RBAM_002680
Name: gldA Funciton: Glycerol dehydrogenase (EC 1.1.1.6) |
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gldA
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Glycerol dehydrogenase (EC 1.1.1.6)
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Position: -42
Score: 4.8 Sequence: AGTTTTTAGAAAATT
Locus tag: RBAM_015170
Name: ylmA Funciton: Putative ABC transporter, ATP-binding protein |
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ylmA
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Putative ABC transporter, ATP-binding protein
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Position: -165
Score: 4.8 Sequence: AATTTTCAAAAAAGT
Locus tag: RBAM_009720
Name: yhdG Funciton: Amino acid permease
Locus tag: RBAM_009730
Name: yhdH Funciton: Putative sodium-dependent transporter |
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yhdG
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Amino acid permease
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yhdH
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Putative sodium-dependent transporter
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Position: -229
Score: 4.4 Sequence: AATTATCAAAATTTT
Locus tag: RBAM_002750
Name: gltP Funciton: Proton/glutamate symport protein @ Proton/aspartate symport protein |
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gltP
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Proton/glutamate symport protein @ Proton/aspartate symport protein
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Position: -70
Score: 4.9 Sequence: ATTTTTCTGAAAAAT
Locus tag: RBAM_027650
Name: ytkC Funciton: Hypothetical membrane protein |
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ytkC
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Hypothetical membrane protein
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Position: -213
Score: 4.5 Sequence: AATTTATTGACAATT
Locus tag: RBAM_025530
Name: yslB Funciton: Predicted hydrocarbon binding protein (V4R domain) |
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yslB
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Predicted hydrocarbon binding protein (V4R domain)
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Position: -98
Score: 4.5 Sequence: AATTGTCAATAAATT
Locus tag: RBAM_025520
Name: sdhC Funciton: Succinate dehydrogenase, cytochrome b subunit
Locus tag: RBAM_025510
Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: RBAM_025500
Name: sdhB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
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sdhC
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Succinate dehydrogenase, cytochrome b subunit
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sdhA
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Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
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sdhB
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Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
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Position: -152
Score: 4.4 Sequence: AAAATTTTGATAATT
Locus tag: RBAM_002760
Name: ybgE Funciton: Branched-chain amino acid aminotransferase (EC 2.6.1.42) |
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ybgE
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Branched-chain amino acid aminotransferase (EC 2.6.1.42)
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Position: -244
Score: 4.5 Sequence: TATTTTTTAAAAAAT
Position: -243
Score: 4.5 Sequence: ATTTTTTAAAAAATA
Locus tag: RBAM_028640
Name: nupN Funciton: Guanosine ABC transport system, substrate-binding component
Locus tag: RBAM_028650
Name: nupO Funciton: Guanosine ABC transport system, ATP-binding protein
Locus tag: RBAM_028660
Name: nupP Funciton: Guanosine ABC transport system, permease component Ia (FIG025991) / Unspecified monosaccharide ABC transport system, permease component Ib (FIG143636)
Locus tag: RBAM_028670
Name: nupQ Funciton: Guanosine ABC transport system, permease component 2 |
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nupN
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Guanosine ABC transport system, substrate-binding component
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nupO
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Guanosine ABC transport system, ATP-binding protein
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nupP
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Guanosine ABC transport system, permease component Ia (FIG025991) / Unspecified monosaccharide ABC transport system, permease component Ib (FIG143636)
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nupQ
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Guanosine ABC transport system, permease component 2
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Position: -49
Score: 4.4 Sequence: TATATTCTTACAATT
Locus tag: RBAM_019090
Name: yocR Funciton: Putative sodium-dependent transporter |
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yocR
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Putative sodium-dependent transporter
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Position: -169
Score: 4.4 Sequence: AATTGTAAGAATATA
Locus tag: RBAM_019100
Name: yocS Funciton: Sodium-dependent transporter |
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yocS
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Sodium-dependent transporter
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Position: -126
Score: 4.5 Sequence: AATTATCAGAAATTA
Position: -96
Score: 4.6 Sequence: AATATTCATAAAAAT
Locus tag: RBAM_024530
Name: glnQ Funciton: Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
Locus tag: RBAM_024540
Name: glnH Funciton: Glutamine-binding protein
Locus tag: RBAM_024550
Name: glnM Funciton: Glutamine transport system permease protein GlnM (TC 3.A.1.3.2)
Locus tag: RBAM_024560
Name: glnP Funciton: Glutamine transport system permease protein GlnP (TC 3.A.1.3.2) |
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glnQ
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Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
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glnH
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Glutamine-binding protein
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glnM
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Glutamine transport system permease protein GlnM (TC 3.A.1.3.2)
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glnP
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Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)
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Position: -90
Score: 4.6 Sequence: AATTTTCTGAAATGT
Locus tag: RBAM_013310
Name: kinE Funciton: Sporulation kinase E
Locus tag: RBAM_013320
Name: ogt Funciton: Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) |
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kinE
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Sporulation kinase E
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ogt
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Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63)
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Position: -93
Score: 4.4 Sequence: TATTTTTAGAAAATG
Locus tag: RBAM_028570
Name: kapD Funciton: KapD, inhibitor of KinA pathway to sporulation |
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kapD
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KapD, inhibitor of KinA pathway to sporulation
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Position: -132
Score: 4.5 Sequence: AAATTTAAAAAAATT
Locus tag: RBAM_029920
Name: fadN Funciton: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
Locus tag: RBAM_029910
Name: fadA Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: RBAM_029900
Name: fadE Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
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fadN
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Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
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fadA
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3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
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fadE
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Acyl-CoA dehydrogenase (EC 1.3.99.3)
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Position: -251
Score: 4.6 Sequence: AATATTCTATAAATT
Locus tag: RBAM_033830
Name: ureA Funciton: Urease gamma subunit (EC 3.5.1.5)
Locus tag: RBAM_033820
Name: ureB Funciton: Urease beta subunit (EC 3.5.1.5)
Locus tag: RBAM_033810
Name: ureC Funciton: Urease alpha subunit (EC 3.5.1.5) |
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ureA
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Urease gamma subunit (EC 3.5.1.5)
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ureB
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Urease beta subunit (EC 3.5.1.5)
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ureC
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Urease alpha subunit (EC 3.5.1.5)
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Position: -185
Score: 4.8 Sequence: AATATTTAGAAAATA
Locus tag: RBAM_029370
Name: hom Funciton: Homoserine dehydrogenase (EC 1.1.1.3)
Locus tag: RBAM_029360
Name: thrC Funciton: Threonine synthase (EC 4.2.3.1)
Locus tag: RBAM_029350
Name: thrB Funciton: Homoserine kinase (EC 2.7.1.39) |
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hom
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Homoserine dehydrogenase (EC 1.1.1.3)
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thrC
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Threonine synthase (EC 4.2.3.1)
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thrB
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Homoserine kinase (EC 2.7.1.39)
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Position: -66
Score: 4.8 Sequence: AATTGTCTGAAAAGT
Locus tag: RBAM_031050
Name: opuBA Funciton: Choline ABC transport system, ATP-binding protein OpuBA
Locus tag: RBAM_031040
Name: opuBB Funciton: Choline ABC transport system, permease protein OpuBB
Locus tag: RBAM_031030
Name: opuBC Funciton: Choline ABC transport system, choline-binding protein OpuBC
Locus tag: RBAM_031020
Name: opuBD Funciton: Choline ABC transport system, permease protein OpuBD |
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opuBA
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Choline ABC transport system, ATP-binding protein OpuBA
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opuBB
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Choline ABC transport system, permease protein OpuBB
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opuBC
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Choline ABC transport system, choline-binding protein OpuBC
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opuBD
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Choline ABC transport system, permease protein OpuBD
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Position: -41
Score: 4.7 Sequence: ACTTTTCAGAAAAAT
Locus tag: RBAM_031100
Name: opuCA Funciton: Osmotically activated L-carnitine/choline ABC transporter, ATP-binding protein OpuCA
Locus tag: RBAM_031090
Name: opuCB Funciton: Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB
Locus tag: RBAM_031080
Name: opuCC Funciton: Osmotically activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC
Locus tag: RBAM_031070
Name: opuCD Funciton: Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCD |
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opuCA
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Osmotically activated L-carnitine/choline ABC transporter, ATP-binding protein OpuCA
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opuCB
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Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB
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opuCC
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Osmotically activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC
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opuCD
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Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCD
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Position: -163
Score: 4.5 Sequence: AATTTTCTGACATAT
Locus tag: RBAM_007070
Name: gatC Funciton: Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7)
Locus tag: RBAM_007080
Name: gatA Funciton: Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7)
Locus tag: RBAM_007090
Name: gatB Funciton: Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7) |
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gatC
|
Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7)
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gatA
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Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7)
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gatB
|
Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7)
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Position: -88
Score: 4.2 Sequence: TATATTCAAAAAAAA
Locus tag: RBAM_010600
Name: comK Funciton: Competence transcription factor |
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comK
|
Competence transcription factor
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Position: -169
Score: 4.7 Sequence: AATTTTCTCACAATT
Locus tag: RBAM_017790
Name: sspO Funciton: Small, acid-soluble spore protein O
Locus tag: RBAM_017780
Name: sspP Funciton: Small, acid-soluble spore protein P |
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sspO
|
Small, acid-soluble spore protein O
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sspP
|
Small, acid-soluble spore protein P
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Position: -178
Score: 4.4 Sequence: CATTTTCTAAAAATA
Locus tag: RBAM_028580
Name: yuxJ Funciton: MFS family major facilitator transporter
Locus tag: RBAM_028590
Name: pbpD Funciton: Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-)
Locus tag: RBAM_028600
Name: yuxK Funciton: Possible thiol-disulphide dehydrogenase |
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yuxJ
|
MFS family major facilitator transporter
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pbpD
|
Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-)
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yuxK
|
Possible thiol-disulphide dehydrogenase
|
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Position: -58
Score: 4.5 Sequence: ATTTGTTAGAATATT
Locus tag: RBAM_012770
Name: dppA Funciton: D-aminopeptidase (EC 3.4.11.-)
Locus tag: RBAM_012780
Name: dppB Funciton: Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)
Locus tag: RBAM_012790
Name: dppC Funciton: Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)
Locus tag: RBAM_012800
Name: dppD Funciton: Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)
Locus tag: RBAM_012810
Name: dppE Funciton: Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) |
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dppA
|
D-aminopeptidase (EC 3.4.11.-)
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|
dppB
|
Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)
|
||
|
dppC
|
Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)
|
||
|
dppD
|
Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)
|
||
|
dppE
|
Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2)
|
||
|
Position: -51
Score: 4.6 Sequence: TATTTTTTAAATATT
Locus tag: RBAM_009700
Name: citA Funciton: Citrate synthase (si) (EC 2.3.3.1) |
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|
citA
|
Citrate synthase (si) (EC 2.3.3.1)
|
||
|
Position: -273
Score: 4.5 Sequence: ATATGTCAGAAAATT
Locus tag: RBAM_007060
Name: opuE Funciton: Sodium/proline symporter |
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|
opuE
|
Sodium/proline symporter
|
||
|
Position: -115
Score: 4.3 Sequence: AATAATCAGAAAAGA
Locus tag: RBAM_011430
Name: oppA Funciton: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
Locus tag: RBAM_011440
Name: oppB Funciton: Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)
Locus tag: RBAM_011450
Name: oppC Funciton: Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)
Locus tag: RBAM_011460
Name: oppD Funciton: Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1)
Locus tag: RBAM_011470
Name: oppF Funciton: Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1) |
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|
oppA
|
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
|
||
|
oppB
|
Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)
|
||
|
oppC
|
Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)
|
||
|
oppD
|
Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1)
|
||
|
oppF
|
Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)
|
||
|
Position: -70
Score: 4.6 Sequence: AAATTTCTAATAATT
Locus tag: RBAM_011920
Name: ycjH Funciton: Putative acetyl esterase YjcH (EC 3.1.1.-)
Locus tag: RBAM_011910
Name: yjcG Funciton: RNA ligase/cyclic nucleotide phosphodiesterase
Locus tag: RBAM_011900
Name: yjcF Funciton: GNAT family acetyltransferase YjcF |
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|
ycjH
|
Putative acetyl esterase YjcH (EC 3.1.1.-)
|
||
|
yjcG
|
RNA ligase/cyclic nucleotide phosphodiesterase
|
||
|
yjcF
|
GNAT family acetyltransferase YjcF
|
||
|
Position: -75
Score: 4.4 Sequence: AATTGTCTTATTATT
Position: -67
Score: 4.5 Sequence: TATTATTTGAATATT
Locus tag: RBAM_019920
Name: ilvA Funciton: Threonine dehydratase biosynthetic (EC 4.3.1.19) |
|||
|
ilvA
|
Threonine dehydratase biosynthetic (EC 4.3.1.19)
|
||
|
Position: -44
Score: 4.8 Sequence: TATTTTCAGAAAAGT
Locus tag: RBAM_033730
Name: spoIIQ Funciton: Stage II sporulation protein related to metaloproteases (SpoIIQ) |
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|
spoIIQ
|
Stage II sporulation protein related to metaloproteases (SpoIIQ)
|
||
|
Position: -56
Score: 4.5 Sequence: AATAAACTGAAAATT
Locus tag: RBAM_020010
Name: ilvD Funciton: Dihydroxy-acid dehydratase (EC 4.2.1.9) |
|||
|
ilvD
|
Dihydroxy-acid dehydratase (EC 4.2.1.9)
|
||
|
Position: -44
Score: 4.5 Sequence: AATTATCAGATATTT
Locus tag: RBAM_021220
Name: serA Funciton: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
|||
|
serA
|
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
|
||
|
Position: -100
Score: 4.6 Sequence: AATTTTTAAAATATA
Locus tag: RBAM_026810
Name: acuA Funciton: Acetyltransferase AcuA, acetyl-CoA synthetase inhibitor
Locus tag: RBAM_026820
Name: acuB Funciton: Component of the acetoin degradation regulation pathway
Locus tag: RBAM_026830
Name: acuC Funciton: NAD-independent protein deacetylase AcuC |
|||
|
acuA
|
Acetyltransferase AcuA, acetyl-CoA synthetase inhibitor
|
||
|
acuB
|
Component of the acetoin degradation regulation pathway
|
||
|
acuC
|
NAD-independent protein deacetylase AcuC
|
||
|
Position: -67
Score: 4.5 Sequence: TATTTTCAAATAATA
Position: -26
Score: 4.4 Sequence: TATTTACTTAAAATT
Locus tag: RBAM_034930
Name: bacA Funciton: Prephenate dehydratase (EC 4.2.1.51)
Locus tag: RBAM_034920
Name: bacB Funciton: Bacilysin biosynthesis protein BacB
Locus tag: RBAM_034910
Name: bacC Funciton: Bacilysin biosynthesis oxidoreductase BacC
Locus tag: RBAM_034900
Name: bacD Funciton: Alanine-anticapsin ligase BacD
Locus tag: RBAM_034890
Name: bacE Funciton: Bacilysin exporter protein BacE
Locus tag: RBAM_034880
Name: mtnE Funciton: Aspartate aminotransferase (EC 2.6.1.1) |
|||
|
bacA
|
Prephenate dehydratase (EC 4.2.1.51)
|
||
|
bacB
|
Bacilysin biosynthesis protein BacB
|
||
|
bacC
|
Bacilysin biosynthesis oxidoreductase BacC
|
||
|
bacD
|
Alanine-anticapsin ligase BacD
|
||
|
bacE
|
Bacilysin exporter protein BacE
|
||
|
mtnE
|
Aspartate aminotransferase (EC 2.6.1.1)
|
||
|
Position: -224
Score: 4.2 Sequence: ATTAATCAGATTATT
Locus tag: RBAM_026180
Name: citZ Funciton: Citrate synthase (si) (EC 2.3.3.1)
Locus tag: RBAM_026170
Name: icd Funciton: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
Locus tag: RBAM_026160
Name: mdh Funciton: Malate dehydrogenase (EC 1.1.1.37) |
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|
citZ
|
Citrate synthase (si) (EC 2.3.3.1)
|
||
|
icd
|
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
|
||
|
mdh
|
Malate dehydrogenase (EC 1.1.1.37)
|
||
|
Position: -84
Score: 4.7 Sequence: ACTTATCAGAAAATT
Locus tag: RBAM_028120
Name: yuaF Funciton: Hypothetical membrane protein
Locus tag: RBAM_028110
Name: yuaG Funciton: Uncharacterized protein YuaG |
|||
|
yuaF
|
Hypothetical membrane protein
|
||
|
yuaG
|
Uncharacterized protein YuaG
|
||
|
Position: -77
Score: 4.7 Sequence: AATTTTCTGATAAGT
Locus tag: RBAM_028130
Name: yuaE Funciton: Hypothetical protein |
|||
|
yuaE
|
Hypothetical protein
|
||
|
Position: -75
Score: 4.4 Sequence: AAAAATCAAAAAATT
Locus tag: RBAM_010260
Name: serC Funciton: Phosphoserine aminotransferase (EC 2.6.1.52) |
|||
|
serC
|
Phosphoserine aminotransferase (EC 2.6.1.52)
|
||
|
Position: -85
Score: 4.6 Sequence: AAATTTCAGACTATT
Locus tag: RBAM_010680
Name: yhjC Funciton: Hypothetical protein
Locus tag: RBAM_010670
Name: yhjB Funciton: Na+/solute symporter |
|||
|
yhjC
|
Hypothetical protein
|
||
|
yhjB
|
Na+/solute symporter
|
||
|
Position: -133
Score: 4.6 Sequence: CATTTTCAGAAAATA
Locus tag: RBAM_014000
Name: rok Funciton: ComK repressor |
|||
|
rok
|
ComK repressor
|
||
|
Position: -39
Score: 4.5 Sequence: ACTATTCTGAAAAAT
Locus tag: RBAM_038050
Name: null Funciton: Acetyltransferase, GNAT family protein |
|||
|
Acetyltransferase, GNAT family protein
|
|||
|
Position: -268
Score: 4.4 Sequence: TATTATCTTAATATT
Locus tag: RBAM_002460
Name: ybxG Funciton: Amino acid permease |
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|
ybxG
|
Amino acid permease
|
||
|
Position: -115
Score: 4.4 Sequence: AATTATATAACAATT
Locus tag: RBAM_014460
Name: slp Funciton: Peptidoglycan-associated protein |
|||
|
slp
|
Peptidoglycan-associated protein
|
||
|
Position: -167
Score: 4.6 Sequence: AATATTCTGTCAATT
Position: -152
Score: 4.7 Sequence: AATTGTCAGATAATA
Locus tag: RBAM_026520
Name: iscS Funciton: Cysteine desulfurase (EC 2.8.1.7)
Locus tag: RBAM_026510
Name: thiI Funciton: Thiamine biosynthesis protein ThiI |
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|
iscS
|
Cysteine desulfurase (EC 2.8.1.7)
|
||
|
thiI
|
Thiamine biosynthesis protein ThiI
|
||
|
Position: -36
Score: 4.5 Sequence: AGTTATCAGAATATT
Locus tag: RBAM_036400
Name: hutP Funciton: Hut operon positive regulatory protein
Locus tag: RBAM_036410
Name: hutH Funciton: Histidine ammonia-lyase (EC 4.3.1.3)
Locus tag: RBAM_036420
Name: hutU Funciton: Urocanate hydratase (EC 4.2.1.49)
Locus tag: RBAM_036430
Name: hutI Funciton: Imidazolonepropionase (EC 3.5.2.7)
Locus tag: RBAM_036440
Name: hutG Funciton: Formiminoglutamase (EC 3.5.3.8)
Locus tag: RBAM_036450
Name: hutM Funciton: Histidine permease |
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|
hutP
|
Hut operon positive regulatory protein
|
||
|
hutH
|
Histidine ammonia-lyase (EC 4.3.1.3)
|
||
|
hutU
|
Urocanate hydratase (EC 4.2.1.49)
|
||
|
hutI
|
Imidazolonepropionase (EC 3.5.2.7)
|
||
|
hutG
|
Formiminoglutamase (EC 3.5.3.8)
|
||
|
hutM
|
Histidine permease
|
||
|
Position: -160
Score: 4.3 Sequence: AAATAACAGAAAATT
Position: -45
Score: 4 Sequence: ACTTGTCGGAATATT
Locus tag: RBAM_006710
Name: gabP Funciton: Gamma-aminobutyrate (GABA) permease |
|||
|
gabP
|
Gamma-aminobutyrate (GABA) permease
|
||
|
Position: -23
Score: 4.8 Sequence: TATTTTTAGAATATT
Locus tag: RBAM_003440
Name: putB Funciton: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase)
Locus tag: RBAM_003450
Name: putC Funciton: Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Locus tag: RBAM_003460
Name: putP Funciton: Proline/sodium symporter (TC 2.A.21.2.1)
Locus tag: RBAM_003470
Name: putR Funciton: Transcriptional regulator of proline utilization |
|||
|
putB
|
Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase)
|
||
|
putC
|
Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
|
||
|
putP
|
Proline/sodium symporter (TC 2.A.21.2.1)
|
||
|
putR
|
Transcriptional regulator of proline utilization
|
||
|
Position: -314
Score: 4.6 Sequence: AATTATTAGAAATTT
Locus tag: RBAM_011930
Name: metI Funciton: Cystathionine gamma-synthase (EC 2.5.1.48)
Locus tag: RBAM_011940
Name: metC Funciton: Cystathionine beta-lyase (EC 4.4.1.8) |
|||
|
metI
|
Cystathionine gamma-synthase (EC 2.5.1.48)
|
||
|
metC
|
Cystathionine beta-lyase (EC 4.4.1.8)
|
||
|
Position: -57
Score: 4.2 Sequence: AATCTTCTGACATTT
Locus tag: RBAM_010310
Name: yhaA Funciton: N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14) |
|||
|
yhaA
|
N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14)
|
||
|
Position: -34
Score: 4.9 Sequence: TATTATCAGAAAATT
Locus tag: RBAM_029140
Name: yuiA Funciton: Conserved hypothetical protein
Locus tag: RBAM_029130
Name: yuiB Funciton: Hypothetical membrane protein
Locus tag: RBAM_029120
Name: yuiC Funciton: Cell wall-binding protein |
|||
|
yuiA
|
Conserved hypothetical protein
|
||
|
yuiB
|
Hypothetical membrane protein
|
||
|
yuiC
|
Cell wall-binding protein
|
||
|
Position: -48
Score: 4.3 Sequence: TATTTTCAAATAAGT
Locus tag: RBAM_035750
Name: ybgE Funciton: Branched-chain amino acid aminotransferase (EC 2.6.1.42) |
|||
|
ybgE
|
Branched-chain amino acid aminotransferase (EC 2.6.1.42)
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |