Regulon of CodY in Bacillus amyloliquefaciens FZB42

Properties
Regulator type:	Transcription factor
TF locus tag:	RBAM_016000
Regulator family:	CodY
Regulation mode:
Biological process:	Amino acid metabolism
Effector:	Guanosine triphosphate; Branched-chain amino acids
Regulog:	CodY - Bacillales
Statistics of regulated genes:
- Genes	146
- Operons	70
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 445 sites [see more]

Member of regulog collections

By taxonomy - Bacillales
By TF family - CodY
By effector - Guanosine triphosphate
By effector - Branched-chain amino acids
By pathway - Amino acid metabolism

Regulated operons
	Locus Tag	Name	Function
Position: -137 Score: 4.5 Sequence: AATATTCAAAAAAAA Locus tag: RBAM_016830 Name: tdh Funciton: L-threonine 3-dehydrogenase (EC 1.1.1.103) Locus tag: RBAM_016840 Name: kbl Funciton: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
	RBAM_016830	tdh	L-threonine 3-dehydrogenase (EC 1.1.1.103)
	RBAM_016840	kbl	2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
Position: -464 Score: 4.7 Sequence: AATTGTCTAATAATT Locus tag: RBAM_025370 Name: ilvB Funciton: Acetolactate synthase large subunit (EC 2.2.1.6) Locus tag: RBAM_025360 Name: ilvH Funciton: Acetolactate synthase small subunit (EC 2.2.1.6) Locus tag: RBAM_025350 Name: ilvC Funciton: Ketol-acid reductoisomerase (EC 1.1.1.86) Locus tag: RBAM_025340 Name: leuA Funciton: 2-isopropylmalate synthase (EC 2.3.3.13) Locus tag: RBAM_025330 Name: leuB Funciton: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) Locus tag: RBAM_025320 Name: leuC Funciton: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) Locus tag: RBAM_025310 Name: leuD Funciton: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
	RBAM_025370	ilvB	Acetolactate synthase large subunit (EC 2.2.1.6)
	RBAM_025360	ilvH	Acetolactate synthase small subunit (EC 2.2.1.6)
	RBAM_025350	ilvC	Ketol-acid reductoisomerase (EC 1.1.1.86)
	RBAM_025340	leuA	2-isopropylmalate synthase (EC 2.3.3.13)
	RBAM_025330	leuB	3-isopropylmalate dehydrogenase (EC 1.1.1.85)
	RBAM_025320	leuC	3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
	RBAM_025310	leuD	3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
Position: -398 Score: 4.4 Sequence: AATATTTTTAAAAAT Locus tag: RBAM_003650 Name: srfAA Funciton: Surfactin synthetase subunit 1 Locus tag: RBAM_003660 Name: srfAB Funciton: Surfactin synthetase subunit 2 Locus tag: RBAM_003670 Name: comS Funciton: Regulator of genetic competence
	RBAM_003650	srfAA	Surfactin synthetase subunit 1
	RBAM_003660	srfAB	Surfactin synthetase subunit 2
	RBAM_003670	comS	Regulator of genetic competence
Position: -73 Score: 4.6 Sequence: TATATTTTAAAAATT Locus tag: RBAM_026800 Name: acsA Funciton: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
	RBAM_026800	acsA	Acetyl-coenzyme A synthetase (EC 6.2.1.1)
Position: -280 Score: 4.6 Sequence: TTTTTTCTGAAAAAT Locus tag: RBAM_019340 Name: yodF Funciton: SSS family solute:sodium (Na+) symporter
	RBAM_019340	yodF	SSS family solute:sodium (Na+) symporter
Position: -172 Score: 4.6 Sequence: ATTTATCAGAAAATA Locus tag: RBAM_026400 Name: ackA Funciton: Acetate kinase (EC 2.7.2.1)
	RBAM_026400	ackA	Acetate kinase (EC 2.7.2.1)
Position: -186 Score: 4.4 Sequence: TATTTTATAAAAATA Locus tag: RBAM_016820 Name: spoVS Funciton: Stage V sporulation protein required for dehydratation of the spore core and assembly of the coat (SpoVS)
	RBAM_016820	spoVS	Stage V sporulation protein required for dehydratation of the spore core and assembly of the coat (SpoVS)
Position: -77 Score: 4.7 Sequence: AATTGTGAGAAAATT Locus tag: RBAM_017800 Name: citB Funciton: Aconitate hydratase (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
	RBAM_017800	citB	Aconitate hydratase (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
Position: -103 Score: 4.8 Sequence: AAATTTCAGAAAATA Locus tag: RBAM_029670 Name: frlB Funciton: Fructoselysine 6-phosphate deglycase (EC 3.5.-.-) Locus tag: RBAM_029660 Name: frlO Funciton: Putative fructoselysine ABC transporter, periplasmic ligand binding protein Locus tag: RBAM_029650 Name: yurN Funciton: Putative fructoselysine ABC transporter, permease Locus tag: RBAM_029640 Name: yurM Funciton: Putative fructoselysine ABC transporter, permease Locus tag: RBAM_029630 Name: frlD Funciton: Fructoselysine kinase
	RBAM_029670	frlB	Fructoselysine 6-phosphate deglycase (EC 3.5.-.-)
	RBAM_029660	frlO	Putative fructoselysine ABC transporter, periplasmic ligand binding protein
	RBAM_029650	yurN	Putative fructoselysine ABC transporter, permease
	RBAM_029640	yurM	Putative fructoselysine ABC transporter, permease
	RBAM_029630	frlD	Fructoselysine kinase
Position: -109 Score: 4.4 Sequence: AATTTTTAGATTTTT Locus tag: RBAM_003510 Name: nasD Funciton: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) Locus tag: RBAM_003500 Name: nasE Funciton: Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) Locus tag: RBAM_003490 Name: nasF Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)
	RBAM_003510	nasD	Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
	RBAM_003500	nasE	Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
	RBAM_003490	nasF	Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)
Position: -100 Score: 4.7 Sequence: AATTTTCAAAGAATT Locus tag: RBAM_017250 Name: glnR Funciton: Transcriptional regulator of nitrogen excess response, MerR family Locus tag: RBAM_017260 Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2)
	RBAM_017250	glnR	Transcriptional regulator of nitrogen excess response, MerR family
	RBAM_017260	glnA	Glutamine synthetase type I (EC 6.3.1.2)
Position: -84 Score: 5 Sequence: AATTTTCCGAAAATT Locus tag: RBAM_012430 Name: yjnA Funciton: Putative integral membrane protein
	RBAM_012430	yjnA	Putative integral membrane protein
Position: -182 Score: 4.6 Sequence: TATTTTCTGAATAGT Locus tag: RBAM_003260 Name: ycgA Funciton: Putative integral inner membrane protein
	RBAM_003260	ycgA	Putative integral inner membrane protein
Position: -104 Score: 4.6 Sequence: ACTATTCAGAAAATA Locus tag: RBAM_003250 Name: amhX Funciton: Amidohydrolase amhX (EC 3.5.1.-)
	RBAM_003250	amhX	Amidohydrolase amhX (EC 3.5.1.-)
Position: -185 Score: 4.5 Sequence: TATTTTTAAATAATT Locus tag: RBAM_005540 Name: cotR Funciton: Putative sporulation hydrolase (EC=3.1.1.-)
	RBAM_005540	cotR	Putative sporulation hydrolase (EC=3.1.1.-)
Position: -76 Score: 4.3 Sequence: AATTTTTTAAAAACA Locus tag: RBAM_020410 Name: yppF Funciton: Hypothetical protein
	RBAM_020410	yppF	Hypothetical protein
Position: -67 Score: 4.6 Sequence: AATATTTAAAAAATA Locus tag: RBAM_009690 Name: citR Funciton: Transcriptional regulator of citrate synthase, LysR family
	RBAM_009690	citR	Transcriptional regulator of citrate synthase, LysR family
Position: -188 Score: 4.4 Sequence: TTTATTCTGAAAAAT Locus tag: RBAM_036120 Name: metE2 Funciton: Methionine synthase II (cobalamin-independent)
	RBAM_036120	metE2	Methionine synthase II (cobalamin-independent)
Position: -56 Score: 4.7 Sequence: TATTATCTGACAATT Position: -41 Score: 4.6 Sequence: AATTGACAGAATATT Locus tag: RBAM_026530 Name: braB Funciton: Branched-chain amino acid transport system carrier protein
	RBAM_026530	braB	Branched-chain amino acid transport system carrier protein
Position: -55 Score: 4.5 Sequence: TATTTTCTGACAAGT Locus tag: RBAM_002680 Name: gldA Funciton: Glycerol dehydrogenase (EC 1.1.1.6)
	RBAM_002680	gldA	Glycerol dehydrogenase (EC 1.1.1.6)
Position: -42 Score: 4.8 Sequence: AGTTTTTAGAAAATT Locus tag: RBAM_015170 Name: ylmA Funciton: Putative ABC transporter, ATP-binding protein
	RBAM_015170	ylmA	Putative ABC transporter, ATP-binding protein
Position: -165 Score: 4.8 Sequence: AATTTTCAAAAAAGT Locus tag: RBAM_009720 Name: yhdG Funciton: Amino acid permease Locus tag: RBAM_009730 Name: yhdH Funciton: Putative sodium-dependent transporter
	RBAM_009720	yhdG	Amino acid permease
	RBAM_009730	yhdH	Putative sodium-dependent transporter
Position: -229 Score: 4.4 Sequence: AATTATCAAAATTTT Locus tag: RBAM_002750 Name: gltP Funciton: Proton/glutamate symport protein @ Proton/aspartate symport protein
	RBAM_002750	gltP	Proton/glutamate symport protein @ Proton/aspartate symport protein
Position: -70 Score: 4.9 Sequence: ATTTTTCTGAAAAAT Locus tag: RBAM_027650 Name: ytkC Funciton: Hypothetical membrane protein
	RBAM_027650	ytkC	Hypothetical membrane protein
Position: -213 Score: 4.5 Sequence: AATTTATTGACAATT Locus tag: RBAM_025530 Name: yslB Funciton: Predicted hydrocarbon binding protein (V4R domain)
	RBAM_025530	yslB	Predicted hydrocarbon binding protein (V4R domain)
Position: -98 Score: 4.5 Sequence: AATTGTCAATAAATT Locus tag: RBAM_025520 Name: sdhC Funciton: Succinate dehydrogenase, cytochrome b subunit Locus tag: RBAM_025510 Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Locus tag: RBAM_025500 Name: sdhB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
	RBAM_025520	sdhC	Succinate dehydrogenase, cytochrome b subunit
	RBAM_025510	sdhA	Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
	RBAM_025500	sdhB	Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Position: -152 Score: 4.4 Sequence: AAAATTTTGATAATT Locus tag: RBAM_002760 Name: ybgE Funciton: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
	RBAM_002760	ybgE	Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Position: -244 Score: 4.5 Sequence: TATTTTTTAAAAAAT Position: -243 Score: 4.5 Sequence: ATTTTTTAAAAAATA Locus tag: RBAM_028640 Name: nupN Funciton: Guanosine ABC transport system, substrate-binding component Locus tag: RBAM_028650 Name: nupO Funciton: Guanosine ABC transport system, ATP-binding protein Locus tag: RBAM_028660 Name: nupP Funciton: Guanosine ABC transport system, permease component Ia (FIG025991) / Unspecified monosaccharide ABC transport system, permease component Ib (FIG143636) Locus tag: RBAM_028670 Name: nupQ Funciton: Guanosine ABC transport system, permease component 2
	RBAM_028640	nupN	Guanosine ABC transport system, substrate-binding component
	RBAM_028650	nupO	Guanosine ABC transport system, ATP-binding protein
	RBAM_028660	nupP	Guanosine ABC transport system, permease component Ia (FIG025991) / Unspecified monosaccharide ABC transport system, permease component Ib (FIG143636)
	RBAM_028670	nupQ	Guanosine ABC transport system, permease component 2
Position: -49 Score: 4.4 Sequence: TATATTCTTACAATT Locus tag: RBAM_019090 Name: yocR Funciton: Putative sodium-dependent transporter
	RBAM_019090	yocR	Putative sodium-dependent transporter
Position: -169 Score: 4.4 Sequence: AATTGTAAGAATATA Locus tag: RBAM_019100 Name: yocS Funciton: Sodium-dependent transporter
	RBAM_019100	yocS	Sodium-dependent transporter
Position: -126 Score: 4.5 Sequence: AATTATCAGAAATTA Position: -96 Score: 4.6 Sequence: AATATTCATAAAAAT Locus tag: RBAM_024530 Name: glnQ Funciton: Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2) Locus tag: RBAM_024540 Name: glnH Funciton: Glutamine-binding protein Locus tag: RBAM_024550 Name: glnM Funciton: Glutamine transport system permease protein GlnM (TC 3.A.1.3.2) Locus tag: RBAM_024560 Name: glnP Funciton: Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)
	RBAM_024530	glnQ	Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
	RBAM_024540	glnH	Glutamine-binding protein
	RBAM_024550	glnM	Glutamine transport system permease protein GlnM (TC 3.A.1.3.2)
	RBAM_024560	glnP	Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)
Position: -90 Score: 4.6 Sequence: AATTTTCTGAAATGT Locus tag: RBAM_013310 Name: kinE Funciton: Sporulation kinase E Locus tag: RBAM_013320 Name: ogt Funciton: Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63)
	RBAM_013310	kinE	Sporulation kinase E
	RBAM_013320	ogt	Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63)
Position: -93 Score: 4.4 Sequence: TATTTTTAGAAAATG Locus tag: RBAM_028570 Name: kapD Funciton: KapD, inhibitor of KinA pathway to sporulation
	RBAM_028570	kapD	KapD, inhibitor of KinA pathway to sporulation
Position: -132 Score: 4.5 Sequence: AAATTTAAAAAAATT Locus tag: RBAM_029920 Name: fadN Funciton: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) Locus tag: RBAM_029910 Name: fadA Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) Locus tag: RBAM_029900 Name: fadE Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
	RBAM_029920	fadN	Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
	RBAM_029910	fadA	3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
	RBAM_029900	fadE	Acyl-CoA dehydrogenase (EC 1.3.99.3)
Position: -251 Score: 4.6 Sequence: AATATTCTATAAATT Locus tag: RBAM_033830 Name: ureA Funciton: Urease gamma subunit (EC 3.5.1.5) Locus tag: RBAM_033820 Name: ureB Funciton: Urease beta subunit (EC 3.5.1.5) Locus tag: RBAM_033810 Name: ureC Funciton: Urease alpha subunit (EC 3.5.1.5)
	RBAM_033830	ureA	Urease gamma subunit (EC 3.5.1.5)
	RBAM_033820	ureB	Urease beta subunit (EC 3.5.1.5)
	RBAM_033810	ureC	Urease alpha subunit (EC 3.5.1.5)
Position: -185 Score: 4.8 Sequence: AATATTTAGAAAATA Locus tag: RBAM_029370 Name: hom Funciton: Homoserine dehydrogenase (EC 1.1.1.3) Locus tag: RBAM_029360 Name: thrC Funciton: Threonine synthase (EC 4.2.3.1) Locus tag: RBAM_029350 Name: thrB Funciton: Homoserine kinase (EC 2.7.1.39)
	RBAM_029370	hom	Homoserine dehydrogenase (EC 1.1.1.3)
	RBAM_029360	thrC	Threonine synthase (EC 4.2.3.1)
	RBAM_029350	thrB	Homoserine kinase (EC 2.7.1.39)
Position: -66 Score: 4.8 Sequence: AATTGTCTGAAAAGT Locus tag: RBAM_031050 Name: opuBA Funciton: Choline ABC transport system, ATP-binding protein OpuBA Locus tag: RBAM_031040 Name: opuBB Funciton: Choline ABC transport system, permease protein OpuBB Locus tag: RBAM_031030 Name: opuBC Funciton: Choline ABC transport system, choline-binding protein OpuBC Locus tag: RBAM_031020 Name: opuBD Funciton: Choline ABC transport system, permease protein OpuBD
	RBAM_031050	opuBA	Choline ABC transport system, ATP-binding protein OpuBA
	RBAM_031040	opuBB	Choline ABC transport system, permease protein OpuBB
	RBAM_031030	opuBC	Choline ABC transport system, choline-binding protein OpuBC
	RBAM_031020	opuBD	Choline ABC transport system, permease protein OpuBD
Position: -41 Score: 4.7 Sequence: ACTTTTCAGAAAAAT Locus tag: RBAM_031100 Name: opuCA Funciton: Osmotically activated L-carnitine/choline ABC transporter, ATP-binding protein OpuCA Locus tag: RBAM_031090 Name: opuCB Funciton: Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB Locus tag: RBAM_031080 Name: opuCC Funciton: Osmotically activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC Locus tag: RBAM_031070 Name: opuCD Funciton: Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCD
	RBAM_031100	opuCA	Osmotically activated L-carnitine/choline ABC transporter, ATP-binding protein OpuCA
	RBAM_031090	opuCB	Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB
	RBAM_031080	opuCC	Osmotically activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC
	RBAM_031070	opuCD	Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCD
Position: -163 Score: 4.5 Sequence: AATTTTCTGACATAT Locus tag: RBAM_007070 Name: gatC Funciton: Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7) Locus tag: RBAM_007080 Name: gatA Funciton: Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7) Locus tag: RBAM_007090 Name: gatB Funciton: Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7)
	RBAM_007070	gatC	Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7)
	RBAM_007080	gatA	Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7)
	RBAM_007090	gatB	Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7)
Position: -88 Score: 4.2 Sequence: TATATTCAAAAAAAA Locus tag: RBAM_010600 Name: comK Funciton: Competence transcription factor
	RBAM_010600	comK	Competence transcription factor
Position: -169 Score: 4.7 Sequence: AATTTTCTCACAATT Locus tag: RBAM_017790 Name: sspO Funciton: Small, acid-soluble spore protein O Locus tag: RBAM_017780 Name: sspP Funciton: Small, acid-soluble spore protein P
	RBAM_017790	sspO	Small, acid-soluble spore protein O
	RBAM_017780	sspP	Small, acid-soluble spore protein P
Position: -178 Score: 4.4 Sequence: CATTTTCTAAAAATA Locus tag: RBAM_028580 Name: yuxJ Funciton: MFS family major facilitator transporter Locus tag: RBAM_028590 Name: pbpD Funciton: Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) Locus tag: RBAM_028600 Name: yuxK Funciton: Possible thiol-disulphide dehydrogenase
	RBAM_028580	yuxJ	MFS family major facilitator transporter
	RBAM_028590	pbpD	Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-)
	RBAM_028600	yuxK	Possible thiol-disulphide dehydrogenase
Position: -58 Score: 4.5 Sequence: ATTTGTTAGAATATT Locus tag: RBAM_012770 Name: dppA Funciton: D-aminopeptidase (EC 3.4.11.-) Locus tag: RBAM_012780 Name: dppB Funciton: Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) Locus tag: RBAM_012790 Name: dppC Funciton: Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) Locus tag: RBAM_012800 Name: dppD Funciton: Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) Locus tag: RBAM_012810 Name: dppE Funciton: Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2)
	RBAM_012770	dppA	D-aminopeptidase (EC 3.4.11.-)
	RBAM_012780	dppB	Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)
	RBAM_012790	dppC	Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)
	RBAM_012800	dppD	Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)
	RBAM_012810	dppE	Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2)
Position: -51 Score: 4.6 Sequence: TATTTTTTAAATATT Locus tag: RBAM_009700 Name: citA Funciton: Citrate synthase (si) (EC 2.3.3.1)
	RBAM_009700	citA	Citrate synthase (si) (EC 2.3.3.1)
Position: -273 Score: 4.5 Sequence: ATATGTCAGAAAATT Locus tag: RBAM_007060 Name: opuE Funciton: Sodium/proline symporter
	RBAM_007060	opuE	Sodium/proline symporter
Position: -115 Score: 4.3 Sequence: AATAATCAGAAAAGA Locus tag: RBAM_011430 Name: oppA Funciton: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) Locus tag: RBAM_011440 Name: oppB Funciton: Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) Locus tag: RBAM_011450 Name: oppC Funciton: Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) Locus tag: RBAM_011460 Name: oppD Funciton: Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1) Locus tag: RBAM_011470 Name: oppF Funciton: Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)
	RBAM_011430	oppA	Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
	RBAM_011440	oppB	Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)
	RBAM_011450	oppC	Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)
	RBAM_011460	oppD	Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1)
	RBAM_011470	oppF	Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)
Position: -70 Score: 4.6 Sequence: AAATTTCTAATAATT Locus tag: RBAM_011920 Name: ycjH Funciton: Putative acetyl esterase YjcH (EC 3.1.1.-) Locus tag: RBAM_011910 Name: yjcG Funciton: RNA ligase/cyclic nucleotide phosphodiesterase Locus tag: RBAM_011900 Name: yjcF Funciton: GNAT family acetyltransferase YjcF
	RBAM_011920	ycjH	Putative acetyl esterase YjcH (EC 3.1.1.-)
	RBAM_011910	yjcG	RNA ligase/cyclic nucleotide phosphodiesterase
	RBAM_011900	yjcF	GNAT family acetyltransferase YjcF
Position: -75 Score: 4.4 Sequence: AATTGTCTTATTATT Position: -67 Score: 4.5 Sequence: TATTATTTGAATATT Locus tag: RBAM_019920 Name: ilvA Funciton: Threonine dehydratase biosynthetic (EC 4.3.1.19)
	RBAM_019920	ilvA	Threonine dehydratase biosynthetic (EC 4.3.1.19)
Position: -44 Score: 4.8 Sequence: TATTTTCAGAAAAGT Locus tag: RBAM_033730 Name: spoIIQ Funciton: Stage II sporulation protein related to metaloproteases (SpoIIQ)
	RBAM_033730	spoIIQ	Stage II sporulation protein related to metaloproteases (SpoIIQ)
Position: -56 Score: 4.5 Sequence: AATAAACTGAAAATT Locus tag: RBAM_020010 Name: ilvD Funciton: Dihydroxy-acid dehydratase (EC 4.2.1.9)
	RBAM_020010	ilvD	Dihydroxy-acid dehydratase (EC 4.2.1.9)
Position: -44 Score: 4.5 Sequence: AATTATCAGATATTT Locus tag: RBAM_021220 Name: serA Funciton: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
	RBAM_021220	serA	D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Position: -100 Score: 4.6 Sequence: AATTTTTAAAATATA Locus tag: RBAM_026810 Name: acuA Funciton: Acetyltransferase AcuA, acetyl-CoA synthetase inhibitor Locus tag: RBAM_026820 Name: acuB Funciton: Component of the acetoin degradation regulation pathway Locus tag: RBAM_026830 Name: acuC Funciton: NAD-independent protein deacetylase AcuC
	RBAM_026810	acuA	Acetyltransferase AcuA, acetyl-CoA synthetase inhibitor
	RBAM_026820	acuB	Component of the acetoin degradation regulation pathway
	RBAM_026830	acuC	NAD-independent protein deacetylase AcuC
Position: -67 Score: 4.5 Sequence: TATTTTCAAATAATA Position: -26 Score: 4.4 Sequence: TATTTACTTAAAATT Locus tag: RBAM_034930 Name: bacA Funciton: Prephenate dehydratase (EC 4.2.1.51) Locus tag: RBAM_034920 Name: bacB Funciton: Bacilysin biosynthesis protein BacB Locus tag: RBAM_034910 Name: bacC Funciton: Bacilysin biosynthesis oxidoreductase BacC Locus tag: RBAM_034900 Name: bacD Funciton: Alanine-anticapsin ligase BacD Locus tag: RBAM_034890 Name: bacE Funciton: Bacilysin exporter protein BacE Locus tag: RBAM_034880 Name: mtnE Funciton: Aspartate aminotransferase (EC 2.6.1.1)
	RBAM_034930	bacA	Prephenate dehydratase (EC 4.2.1.51)
	RBAM_034920	bacB	Bacilysin biosynthesis protein BacB
	RBAM_034910	bacC	Bacilysin biosynthesis oxidoreductase BacC
	RBAM_034900	bacD	Alanine-anticapsin ligase BacD
	RBAM_034890	bacE	Bacilysin exporter protein BacE
	RBAM_034880	mtnE	Aspartate aminotransferase (EC 2.6.1.1)
Position: -224 Score: 4.2 Sequence: ATTAATCAGATTATT Locus tag: RBAM_026180 Name: citZ Funciton: Citrate synthase (si) (EC 2.3.3.1) Locus tag: RBAM_026170 Name: icd Funciton: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) Locus tag: RBAM_026160 Name: mdh Funciton: Malate dehydrogenase (EC 1.1.1.37)
	RBAM_026180	citZ	Citrate synthase (si) (EC 2.3.3.1)
	RBAM_026170	icd	Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
	RBAM_026160	mdh	Malate dehydrogenase (EC 1.1.1.37)
Position: -84 Score: 4.7 Sequence: ACTTATCAGAAAATT Locus tag: RBAM_028120 Name: yuaF Funciton: Hypothetical membrane protein Locus tag: RBAM_028110 Name: yuaG Funciton: Uncharacterized protein YuaG
	RBAM_028120	yuaF	Hypothetical membrane protein
	RBAM_028110	yuaG	Uncharacterized protein YuaG
Position: -77 Score: 4.7 Sequence: AATTTTCTGATAAGT Locus tag: RBAM_028130 Name: yuaE Funciton: Hypothetical protein
	RBAM_028130	yuaE	Hypothetical protein
Position: -75 Score: 4.4 Sequence: AAAAATCAAAAAATT Locus tag: RBAM_010260 Name: serC Funciton: Phosphoserine aminotransferase (EC 2.6.1.52)
	RBAM_010260	serC	Phosphoserine aminotransferase (EC 2.6.1.52)
Position: -85 Score: 4.6 Sequence: AAATTTCAGACTATT Locus tag: RBAM_010680 Name: yhjC Funciton: Hypothetical protein Locus tag: RBAM_010670 Name: yhjB Funciton: Na+/solute symporter
	RBAM_010680	yhjC	Hypothetical protein
	RBAM_010670	yhjB	Na+/solute symporter
Position: -133 Score: 4.6 Sequence: CATTTTCAGAAAATA Locus tag: RBAM_014000 Name: rok Funciton: ComK repressor
	RBAM_014000	rok	ComK repressor
Position: -39 Score: 4.5 Sequence: ACTATTCTGAAAAAT Locus tag: RBAM_038050 Name: null Funciton: Acetyltransferase, GNAT family protein
	RBAM_038050		Acetyltransferase, GNAT family protein
Position: -268 Score: 4.4 Sequence: TATTATCTTAATATT Locus tag: RBAM_002460 Name: ybxG Funciton: Amino acid permease
	RBAM_002460	ybxG	Amino acid permease
Position: -115 Score: 4.4 Sequence: AATTATATAACAATT Locus tag: RBAM_014460 Name: slp Funciton: Peptidoglycan-associated protein
	RBAM_014460	slp	Peptidoglycan-associated protein
Position: -167 Score: 4.6 Sequence: AATATTCTGTCAATT Position: -152 Score: 4.7 Sequence: AATTGTCAGATAATA Locus tag: RBAM_026520 Name: iscS Funciton: Cysteine desulfurase (EC 2.8.1.7) Locus tag: RBAM_026510 Name: thiI Funciton: Thiamine biosynthesis protein ThiI
	RBAM_026520	iscS	Cysteine desulfurase (EC 2.8.1.7)
	RBAM_026510	thiI	Thiamine biosynthesis protein ThiI
Position: -36 Score: 4.5 Sequence: AGTTATCAGAATATT Locus tag: RBAM_036400 Name: hutP Funciton: Hut operon positive regulatory protein Locus tag: RBAM_036410 Name: hutH Funciton: Histidine ammonia-lyase (EC 4.3.1.3) Locus tag: RBAM_036420 Name: hutU Funciton: Urocanate hydratase (EC 4.2.1.49) Locus tag: RBAM_036430 Name: hutI Funciton: Imidazolonepropionase (EC 3.5.2.7) Locus tag: RBAM_036440 Name: hutG Funciton: Formiminoglutamase (EC 3.5.3.8) Locus tag: RBAM_036450 Name: hutM Funciton: Histidine permease
	RBAM_036400	hutP	Hut operon positive regulatory protein
	RBAM_036410	hutH	Histidine ammonia-lyase (EC 4.3.1.3)
	RBAM_036420	hutU	Urocanate hydratase (EC 4.2.1.49)
	RBAM_036430	hutI	Imidazolonepropionase (EC 3.5.2.7)
	RBAM_036440	hutG	Formiminoglutamase (EC 3.5.3.8)
	RBAM_036450	hutM	Histidine permease
Position: -160 Score: 4.3 Sequence: AAATAACAGAAAATT Position: -45 Score: 4 Sequence: ACTTGTCGGAATATT Locus tag: RBAM_006710 Name: gabP Funciton: Gamma-aminobutyrate (GABA) permease
	RBAM_006710	gabP	Gamma-aminobutyrate (GABA) permease
Position: -23 Score: 4.8 Sequence: TATTTTTAGAATATT Locus tag: RBAM_003440 Name: putB Funciton: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) Locus tag: RBAM_003450 Name: putC Funciton: Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) Locus tag: RBAM_003460 Name: putP Funciton: Proline/sodium symporter (TC 2.A.21.2.1) Locus tag: RBAM_003470 Name: putR Funciton: Transcriptional regulator of proline utilization
	RBAM_003440	putB	Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase)
	RBAM_003450	putC	Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
	RBAM_003460	putP	Proline/sodium symporter (TC 2.A.21.2.1)
	RBAM_003470	putR	Transcriptional regulator of proline utilization
Position: -314 Score: 4.6 Sequence: AATTATTAGAAATTT Locus tag: RBAM_011930 Name: metI Funciton: Cystathionine gamma-synthase (EC 2.5.1.48) Locus tag: RBAM_011940 Name: metC Funciton: Cystathionine beta-lyase (EC 4.4.1.8)
	RBAM_011930	metI	Cystathionine gamma-synthase (EC 2.5.1.48)
	RBAM_011940	metC	Cystathionine beta-lyase (EC 4.4.1.8)
Position: -57 Score: 4.2 Sequence: AATCTTCTGACATTT Locus tag: RBAM_010310 Name: yhaA Funciton: N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14)
	RBAM_010310	yhaA	N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14)
Position: -34 Score: 4.9 Sequence: TATTATCAGAAAATT Locus tag: RBAM_029140 Name: yuiA Funciton: Conserved hypothetical protein Locus tag: RBAM_029130 Name: yuiB Funciton: Hypothetical membrane protein Locus tag: RBAM_029120 Name: yuiC Funciton: Cell wall-binding protein
	RBAM_029140	yuiA	Conserved hypothetical protein
	RBAM_029130	yuiB	Hypothetical membrane protein
	RBAM_029120	yuiC	Cell wall-binding protein
Position: -48 Score: 4.3 Sequence: TATTTTCAAATAAGT Locus tag: RBAM_035750 Name: ybgE Funciton: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
	RBAM_035750	ybgE	Branched-chain amino acid aminotransferase (EC 2.6.1.42)

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of CodY in Bacillus amyloliquefaciens FZB42

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --