Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Pseudomonas mendocina ymp

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF BirA Biotin Biotin biosynthesis 3 2
TF CadR-PbrR Lead ion, (Pb2+); Cadmium, ion (Cd2+) Lead resistance; Cadmium resistance 2 2
TF CueR Copper ion, (Cu+) Copper resistance 5 3
TF DesT Unsaturated acyl-CoA; Unsaturated acyl-ACP Fatty acid biosynthesis 3 4
TF FabR2 Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 2 4
TF FdsR Formate Formate oxydation 2 4
TF FruR Fructose-1-phosphate; Fructose-1,6-diphosphate Fructose utilization 2 2
TF GcvR Glycine Glycine metabolism 1 3
TF GguR Glucuronate utilization; Glucarate utilization; Galacturonate utilization; Galactarate utilization 5 8
TF GlcC Glycolate Glycolate utilization 2 4
TF GntR Gluconate Gluconate utilization 1 1
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 5 7
TF HexR1 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 5 4
TF HutC cis-Urocanic acid Histidine utilization 2 4
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 2 2
TF LexA DNA damage SOS response 15 13
TF LiuR Branched-chain amino acid degradation 1 2
TF LldR L-lactate Lactate utilization 2 4
TF MetR Homocysteine Methionine biosynthesis 5 5
TF ModE Molybdate Molybdenum homeostasis 2 1
TF NorR Nitric oxide Nitrosative stress response 2 6
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 3 3
TF NrtR Adenosine diphosphate ribose NAD biosynthesis 2 2
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 6 6
TF PA0268 1 1
TF PA1520 Xanthine utilization; Allantoin utilization 10 20
TF PSPTO1352 1 1
TF PdxQ3 Metabolite transport; Pyridoxine/pyridoxal homeostasis 1 1
TF PdxW2 Pyridoxal-5-phosphate Pyridoxine biosynthesis 1 1
TF PhhR Tyrosine; Phenylalanine Aromatic amino acid metabolism 3 4
TF PhnF Phosphonate utilization 1 1
TF PhnR Phosphonate utilization; 2-aminoethylphosphonate utilization 3 5
TF PhrR Blue light; Adenosylcobalamin Light-dependent DNA repair 6 7
TF PrpR 2-methylcitrate Methylcitrate utilization 2 2
TF PsrA Oleate Fatty acid degradation 10 9
TF RutR Uracil Pyrimidine utilization 6 6
TF RutR3 Uracil Pyrimidine utilization 3 4
TF SahR S-adenosylhomocysteine Methionine metabolism 1 1
TF SdaR D-glycerate Glycerate utilization 2 1
TF SoxR Paraquat Superoxide stress response 3 2
TF UreR 2 6
TF YdcR 1 1
TF YjiR 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 7 5
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 7 6
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA S15 Ribosome biogenesis 1 1
RNA SAH_riboswitch S-adenosylhomocysteine Methionine metabolism 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 1 1
RNA mini-ykkC Multidrug resistance 2 1
RNA ykkC-yxkD Multidrug resistance 5 3
RNA yybP-ykoY 1 1
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