Regulon of PsrA in Pseudomonas mendocina ymp
| Regulator type: | Transcription factor |
| TF locus tag: | Pmen_1588 |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Fatty acid degradation |
| Effector: | Oleate |
| Regulog: | PsrA - Pseudomonadaceae |
| Statistics of regulated genes: | |
| - Genes | 11 |
| - Operons | 8 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - PsrA
- By taxonomy - Pseudomonadaceae
- By TF family - TetR
- By effector - Oleate
- By pathway - Fatty acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -221
Score: 5.6 Sequence: ATACAAACGTTTGTTTGAAT
Locus tag: Pmen_2707
Name: etfB Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: Pmen_2706
Name: etfA Funciton: Electron transfer flavoprotein, alpha subunit |
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etfB
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Electron transfer flavoprotein, beta subunit
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etfA
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Electron transfer flavoprotein, alpha subunit
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Position: -424
Score: 4.8 Sequence: CCTCAAACGGTAGTTTGAAT
Locus tag: Pmen_3020
Name: rpoS Funciton: RNA polymerase sigma factor RpoS |
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rpoS
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RNA polymerase sigma factor RpoS
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Position: -123
Score: 5.9 Sequence: ATTCAAACAAACGTTTGTAT
Locus tag: Pmen_2708
Name: etfD Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
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etfD
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Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
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Position: -89
Score: 5.7 Sequence: ATTCAAACAAGCGTATGTTT
Locus tag: Pmen_2531
Name: null Funciton: Phosphoglycerate mutase family protein
Locus tag: Pmen_2532
Name: scp Funciton: Sterol-binding domain protein |
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Phosphoglycerate mutase family protein
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scp
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Sterol-binding domain protein
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Position: -269
Score: 5.2 Sequence: GATTAAACGCTCGTATGAAA
Locus tag: Pmen_0285
Name: algQ Funciton: Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ |
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algQ
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Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ
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Position: -125
Score: 5.9 Sequence: TTTCAAACGCCTGTTTGATT
Locus tag: Pmen_4081
Name: acdH1 Funciton: probable acyl-CoA dehydrogenase |
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acdH1
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probable acyl-CoA dehydrogenase
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Position: -178
Score: 5.7 Sequence: AATCAAACGGGCGTATGAAT
Locus tag: Pmen_1580
Name: fadB Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: Pmen_1581
Name: fadA Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
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fadB
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Enoyl-CoA hydratase (EC 4.2.1.17)
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fadA
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3-ketoacyl-CoA thiolase (EC 2.3.1.16)
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Position: -44
Score: 5 Sequence: GCTGAAACGTATGTTTCAAA
Position: -31
Score: 5.8 Sequence: TTTCAAACAAGTGTTTGTCA
Locus tag: Pmen_1588
Name: psrA Funciton: Predicted transcriptional regulator for fatty acid degradation PsrA, TetR family |
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psrA
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Predicted transcriptional regulator for fatty acid degradation PsrA, TetR family
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |