Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LexA in Pseudomonas mendocina ymp

Properties
Regulator type: Transcription factor
TF locus tag: Pmen_1587
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Pseudomonadaceae
Statistics of regulated genes:
- Genes 20
- Operons 12
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 101 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -61
Score: 5.2
Sequence: ACTGGCTACTTATACAGT
Locus tag: Pmen_3015
Name: recA
Funciton: Recombinase A
Locus tag: Pmen_3014
Name: recX
Funciton: Regulatory protein RecX
Pmen_3015
recA
Recombinase A
Pmen_3014
recX
Regulatory protein RecX
Position: -57
Score: 5.5
Sequence: ACTGTACAAACAACCAGT
Locus tag: Pmen_3241
Name: yebG
Funciton: SOS regulon DNA damage-inducible protein
Pmen_3241
yebG
SOS regulon DNA damage-inducible protein
Position: -34
Score: 5.5
Sequence: ACTGTTCATATATACAGT
Locus tag: Pmen_4466
Name: PF04055
Funciton: DNA repair photolyase
Pmen_4466
PF04055
DNA repair photolyase
Position: -25
Score: 5.6
Sequence: ACTGGATAAATAGACAGT
Locus tag: Pmen_1270
Name: ruvC
Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Locus tag: Pmen_1271
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: Pmen_1272
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
Pmen_1270
ruvC
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Pmen_1271
ruvA
Holliday junction DNA helicase RuvA
Pmen_1272
ruvB
Holliday junction DNA helicase RuvB
Position: -37
Score: 5.7
Sequence: ACTGTATGCATAGACAGT
Locus tag: Pmen_1936
Name: imuA
Funciton: Predicted RecA/RadA recombinase
Locus tag: Pmen_1935
Name: imuB
Funciton: DNA polymerase-like protein PA0670
Locus tag: Pmen_1934
Name: dnaE2
Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7)
Pmen_1936
imuA
Predicted RecA/RadA recombinase
Pmen_1935
imuB
DNA polymerase-like protein PA0670
Pmen_1934
dnaE2
DNA polymerase III alpha subunit (EC 2.7.7.7)
Position: -45
Score: 5.5
Sequence: ACTGTATATAATCCCAGT
Position: -26
Score: 5.7
Sequence: ACTGTATAAAAAGACAGA
Locus tag: Pmen_1587
Name: lexA
Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
Locus tag: Pmen_1586
Name: sulA
Funciton: Cell division inhibitor sulA
Pmen_1587
lexA
SOS-response repressor and protease LexA (EC 3.4.21.88)
Pmen_1586
sulA
Cell division inhibitor sulA
Position: -40
Score: 5.9
Sequence: ACTGTATAAATAACCAGA
Locus tag: Pmen_3626
Name: recN
Funciton: DNA repair protein RecN
Pmen_3626
recN
DNA repair protein RecN
Position: -75
Score: 5.2
Sequence: ACTGTTTATTTGTACAGT
Locus tag: Pmen_2106
Name: PA0922
Funciton: Predicted replication protein
Pmen_2106
PA0922
Predicted replication protein
Position: -34
Score: 6
Sequence: ACTGTATAAAAAAACAGT
Locus tag: Pmen_4146
Name: PSEEN2356
Funciton: Radical SAM domain protein
Locus tag: Pmen_4147
Name: PSEEN2355
Funciton: Domain often clustered or fused with uracil-DNA glycosylase
Pmen_4146
PSEEN2356
Radical SAM domain protein
Pmen_4147
PSEEN2355
Domain often clustered or fused with uracil-DNA glycosylase
Position: -37
Score: 5.2
Sequence: ACTGAAAATTTATCCAGC
Locus tag: Pmen_1427
Name: dinG
Funciton: ATP-dependent helicase DinG/Rad3
Pmen_1427
dinG
ATP-dependent helicase DinG/Rad3
Position: -21
Score: 5.6
Sequence: TCTGTATAAAAAACCAGT
Locus tag: Pmen_4110
Name: PF08774
Funciton: Hypothetical protein, restriction endonuclease-like VRR-NUC domain
Locus tag: Pmen_4111
Name: COG1199
Funciton: Rad3-related DNA helicases
Pmen_4110
PF08774
Hypothetical protein, restriction endonuclease-like VRR-NUC domain
Pmen_4111
COG1199
Rad3-related DNA helicases
Position: -57
Score: 5.5
Sequence: ACTGTACAAACAACCAGT
Locus tag: Pmen_3241
Name: PF07130
Funciton: Conserved hypothetical protein
Pmen_3241
PF07130
Conserved hypothetical protein
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