Regulog LexA - Pseudomonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	LexA
Regulation mode:	repressor
Biological process:	SOS response
Effector:	DNA damage
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 101 sites [see more]

Member of regulog collections

By trascription factor - LexA
By taxonomy - Pseudomonadaceae
By TF family - LexA
By effector - DNA damage
By pathway - SOS response

Statistics of regulated genes
Genome	Genes	Operons
Pseudomonas aeruginosa PAO1	16	11
Pseudomonas entomophila L48	18	14
Pseudomonas putida KT2440	20	16
Pseudomonas syringae pv. tomato str. DC3000	13	11
Pseudomonas fluorescens Pf-5	18	12
Pseudomonas mendocina ymp	20	12
Pseudomonas stutzeri A1501	18	12
Azotobacter vinelandii AvOP	7	5

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
umuD	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas putida KT2440	* Pseudomonas syringae pv. tomato str. DC3000 Site: position = -46 score = 5.29579 sequence = ACTGTACGTCTATACAGT Gene: PSPTOA0002: DNA polymerase V, subunit UmuD	* Pseudomonas fluorescens Pf-5 Site: position = -9 score = 5.23105 sequence = ACTGTATTTTTGTACAGT Gene: PFL_4691: DNA polymerase V, subunit UmuD	Pseudomonas mendocina ymp	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	DNA polymerase V, subunit UmuD
umuC	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas putida KT2440	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO0591: DNA polymerase V, subunit UmuC	2 Pseudomonas fluorescens Pf-5 Gene: PFL_4692: DNA polymerase V, subunit UmuC Gene: PFL_2022: DNA polymerase V, subunit UmuC	Pseudomonas mendocina ymp	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	DNA polymerase V, subunit UmuC

CRON 2.
PF07867	Pseudomonas aeruginosa PAO1 Gene: PA2381: Conserved hypothetical protein	* Pseudomonas entomophila L48 Site: position = -36 score = 5.62122 sequence = ACTGTATGCACATACAGC Gene: PSEEN1950: Conserved hypothetical protein	2 Pseudomonas putida KT2440* Site: position = -36 score = 5.28986 sequence = ACTGTCTATGCATACAGT Gene: PP3901: Conserved hypothetical protein Site: position = -36 score = 5.29588 sequence = ACTGTATGTGCATACAGC Gene: PP2452: Conserved hypothetical protein	* Pseudomonas syringae pv. tomato str. DC3000 Site: position = -37 score = 4.83884 sequence = ACTGTATGCCCGTACAGC Gene: PSPTO2365: Conserved hypothetical protein	* Pseudomonas fluorescens Pf-5 Site: position = -5 score = 5.274 sequence = ACTGTATGCACGTACAGC Gene: PFL_2098: Conserved hypothetical protein	Pseudomonas mendocina ymp	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Conserved hypothetical protein

CRON 3.
recN	* Pseudomonas aeruginosa PAO1 Site: position = -41 score = 5.86786 sequence = ACTGTATAAATAACCAGA Gene: PA4763: DNA repair protein RecN	* Pseudomonas entomophila L48 Site: position = -41 score = 5.9906 sequence = ACTGTATAAATATCCAGA Gene: PSEEN0776: DNA repair protein RecN	* Pseudomonas putida KT2440 Site: position = -41 score = 5.86786 sequence = ACTGTATAAATAACCAGA Gene: PP4729: DNA repair protein RecN	* Pseudomonas syringae pv. tomato str. DC3000 Site: position = -40 score = 5.9906 sequence = ACTGTATAAATATCCAGA Gene: PSPTO4507: DNA repair protein RecN	* Pseudomonas fluorescens Pf-5 Site: position = -41 score = 5.86786 sequence = ACTGTATAAATAACCAGA Gene: PFL_0825: DNA repair protein RecN	* Pseudomonas mendocina ymp Site: position = -40 score = 5.86786 sequence = ACTGTATAAATAACCAGA Gene: Pmen_3626: DNA repair protein RecN	* Pseudomonas stutzeri A1501 Site: position = -41 score = 5.7179 sequence = ACTGTATAAATAGCCAGC Gene: PST_3329: DNA repair protein RecN	* Azotobacter vinelandii AvOP Site: position = -40 score = 5.91609 sequence = ACTGTATATATACACAGA Gene: Avin_42990: DNA repair protein RecN	DNA repair protein RecN

CRON 4.
lexA	* Pseudomonas aeruginosa PAO1 Site: position = -45 score = 5.50544 sequence = ACTGTATATAATCCCAGT Site: position = -26 score = 5.39208 sequence = ACTGGATAAAAACACAGA Gene: PA3007: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Pseudomonas entomophila L48 Site: position = -47 score = 5.50544 sequence = ACTGTATATAATCCCAGT Site: position = -28 score = 5.74523 sequence = ACTGTATAAAAAGACAGA Gene: PSEEN3721: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Pseudomonas putida KT2440 Site: position = -46 score = 5.72602 sequence = ACTGTATATAATTCCAGT Site: position = -27 score = 5.40056 sequence = ACTGTACAAAAAGACAGA Gene: PP2143: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Pseudomonas syringae pv. tomato str. DC3000 Site: position = -46 score = 5.50544 sequence = ACTGTATATAATCCCAGT Site: position = -27 score = 5.65486 sequence = ACTGTATAAAAAGCCAGA Gene: PSPTO3510: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Pseudomonas fluorescens Pf-5 Site: position = -46 score = 5.50544 sequence = ACTGTATATAATCCCAGT Site: position = -27 score = 5.74523 sequence = ACTGTATAAAAAGACAGA Gene: PFL_1949: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Pseudomonas mendocina ymp Site: position = -45 score = 5.50544 sequence = ACTGTATATAATCCCAGT Site: position = -26 score = 5.74523 sequence = ACTGTATAAAAAGACAGA Gene: Pmen_1587: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Pseudomonas stutzeri A1501 Site: position = -215 score = 5.50544 sequence = ACTGTATATAATCCCAGT Site: position = -196 score = 5.51131 sequence = ACTGTATAAAAGAACAGA Gene: PST_1734: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Azotobacter vinelandii AvOP Site: position = -46 score = 5.59581 sequence = ACTGTATATAATCACAGT Site: position = -27 score = 5.37662 sequence = ACTGGATAAAAAGACAGA Gene: Avin_14510: SOS-response repressor and protease LexA (EC 3.4.21.88)	SOS-response repressor and protease LexA (EC 3.4.21.88)
sulA	Pseudomonas aeruginosa PAO1 Gene: PA3008: Cell division inhibitor sulA	Pseudomonas entomophila L48 Gene: PSEEN3722: Cell division inhibitor sulA	Pseudomonas putida KT2440 Gene: PP2142: Cell division inhibitor sulA	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO3511: Cell division inhibitor sulA	Pseudomonas fluorescens Pf-5 Gene: PFL_1948: Cell division inhibitor sulA	Pseudomonas mendocina ymp Gene: Pmen_1586: Cell division inhibitor sulA	Pseudomonas stutzeri A1501 Gene: PST_1733: Cell division inhibitor sulA	Azotobacter vinelandii AvOP Gene: Avin_14500: Cell division inhibitor sulA	Cell division inhibitor sulA

CRON 5.
recA	* Pseudomonas aeruginosa PAO1 Site: position = -60 score = 5.59336 sequence = ACTGTCTACTTATACAGT Gene: PA3617: Recombinase A	* Pseudomonas entomophila L48 Site: position = -60 score = 5.22474 sequence = ACTGGCTACTTATACAGT Gene: PSEEN4128: Recombinase A	* Pseudomonas putida KT2440 Site: position = -60 score = 4.83933 sequence = ACTGGCTACTTATACAGG Gene: PP1629: Recombinase A	* Pseudomonas syringae pv. tomato str. DC3000 Site: position = -67 score = 5.09849 sequence = ACTGTTTACTTATACAGG Gene: PSPTO4033: Recombinase A	* Pseudomonas fluorescens Pf-5 Site: position = -57 score = 4.83933 sequence = ACTGGCTACTTATACAGG Gene: PFL_1231: Recombinase A	2 Pseudomonas mendocina ymp* Site: position = -61 score = 5.22474 sequence = ACTGGCTACTTATACAGT Gene: Pmen_3015: Recombinase A Gene: Pmen_0425: Recombinase A	* Pseudomonas stutzeri A1501 Site: position = -57 score = 5.59336 sequence = ACTGTCTACTTATACAGT Gene: PST_1508: Recombinase A	* Azotobacter vinelandii AvOP Site: position = -60 score = 5.59336 sequence = ACTGTCTACTTATACAGT Gene: Avin_38560: Recombinase A	Recombinase A
recX	Pseudomonas aeruginosa PAO1 Gene: PA3616: Regulatory protein RecX	Pseudomonas entomophila L48 Gene: PSEEN4127: Regulatory protein RecX	Pseudomonas putida KT2440 Gene: PP1630: Regulatory protein RecX	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO4032: Regulatory protein RecX	Pseudomonas fluorescens Pf-5 Gene: PFL_1232: Regulatory protein RecX	Pseudomonas mendocina ymp Gene: Pmen_3014: Regulatory protein RecX	Pseudomonas stutzeri A1501 Gene: PST_1509: Regulatory protein RecX	Azotobacter vinelandii AvOP Gene: Avin_38550: Regulatory protein RecX	Regulatory protein RecX

CRON 6.
yebG	* Pseudomonas aeruginosa PAO1 Site: position = -57 score = 5.54602 sequence = ACTGTATGGATAACCAGT Gene: PA3413: SOS regulon DNA damage-inducible protein	* Pseudomonas entomophila L48 Site: position = -59 score = 5.82613 sequence = ACTGTATAAAGATACAGT Gene: PSEEN4605: SOS regulon DNA damage-inducible protein	* Pseudomonas putida KT2440 Site: position = -58 score = 5.88182 sequence = ACTGTATATAGATACAGT Gene: PP4616: SOS regulon DNA damage-inducible protein	* Pseudomonas syringae pv. tomato str. DC3000 Site: position = -224 score = 5.88734 sequence = ACTGTATAAAAACACAGT Gene: PSPTO1197: SOS regulon DNA damage-inducible protein	* Pseudomonas fluorescens Pf-5 Site: position = -111 score = 5.31655 sequence = CCTGTATATAGATACAGT Gene: PFL_0975: SOS regulon DNA damage-inducible protein	* Pseudomonas mendocina ymp Site: position = -57 score = 5.46856 sequence = ACTGTACAAACAACCAGT Gene: Pmen_3241: SOS regulon DNA damage-inducible protein	* Pseudomonas stutzeri A1501 Site: position = -47 score = 5.27856 sequence = GCTGTACAAATAAACAGT Gene: PST_3169: SOS regulon DNA damage-inducible protein	Azotobacter vinelandii AvOP	SOS regulon DNA damage-inducible protein

CRON 7.
PF04055	* Pseudomonas aeruginosa PAO1 Site: position = -37 score = 5.61187 sequence = ACTGTATCCATATACAGT Gene: PA0069: DNA repair photolyase	* Pseudomonas entomophila L48 Site: position = -35 score = 5.67157 sequence = ACTGTATTCATATACAGT Gene: PSEEN0052: DNA repair photolyase	* Pseudomonas putida KT2440 Site: position = -31 score = 5.96049 sequence = ACTGTATATTAATACAGT Gene: PP0099: DNA repair photolyase	* Pseudomonas syringae pv. tomato str. DC3000 Site: position = -34 score = 5.29172 sequence = ACTGTACGGATAAACAGT Gene: PSPTO5254: DNA repair photolyase	* Pseudomonas fluorescens Pf-5 Site: position = -32 score = 5.45919 sequence = ACTGTATGTGCATACAGT Gene: PFL_0057: DNA repair photolyase	* Pseudomonas mendocina ymp Site: position = -34 score = 5.45217 sequence = ACTGTTCATATATACAGT Gene: Pmen_4466: DNA repair photolyase	* Pseudomonas stutzeri A1501 Site: position = 217 score = 5.97726 sequence = ACTGTATATATAAACAGC Gene: PST_4159: DNA repair photolyase	Azotobacter vinelandii AvOP	DNA repair photolyase

CRON 8.
PFL_4225	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas putida KT2440	Pseudomonas syringae pv. tomato str. DC3000	* Pseudomonas fluorescens Pf-5 Site: position = -35 score = 5.80249 sequence = ACTGTATGCATATACAGC Gene: PFL_4225: Hypothetical protein, putative peptidase	Pseudomonas mendocina ymp	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Hypothetical protein, putative peptidase
PA0922	* Pseudomonas aeruginosa PAO1 Site: position = -69 score = 5.36839 sequence = ACTGTATATTCGTACAGC Gene: PA0922: Predicted replication protein	* Pseudomonas entomophila L48 Site: position = -32 score = 5.70196 sequence = GCTGTATATAAATACAGT Gene: PSEEN3760: Predicted replication protein	* Pseudomonas putida KT2440 Site: position = -32 score = 5.70196 sequence = GCTGTATATAAATACAGT Gene: PP2109: Predicted replication protein	Pseudomonas syringae pv. tomato str. DC3000	Pseudomonas fluorescens Pf-5 Gene: PFL_4224: Predicted replication protein	* Pseudomonas mendocina ymp Site: position = -75 score = 5.2465 sequence = ACTGTTTATTTGTACAGT Gene: Pmen_2106: Predicted replication protein	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Predicted replication protein

CRON 9.
dinB	Pseudomonas aeruginosa PAO1 Gene: PA0923: DNA polymerase IV (EC 2.7.7.7)	* Pseudomonas entomophila L48 Site: position = -32 score = 5.3395 sequence = TCTGTATGAATTTACAGT Gene: PSEEN4107: DNA polymerase IV (EC 2.7.7.7)	* Pseudomonas putida KT2440 Site: position = -32 score = 5.3395 sequence = TCTGTATGAATTTACAGT Gene: PP1203: DNA polymerase IV (EC 2.7.7.7)	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO3990: DNA polymerase IV (EC 2.7.7.7)	Pseudomonas fluorescens Pf-5 Gene: PFL_1254: DNA polymerase IV (EC 2.7.7.7)	Pseudomonas mendocina ymp Gene: Pmen_1726: DNA polymerase IV (EC 2.7.7.7)	Pseudomonas stutzeri A1501 Gene: PST_2990: DNA polymerase IV (EC 2.7.7.7)	Azotobacter vinelandii AvOP Gene: Avin_37100: DNA polymerase IV (EC 2.7.7.7)	DNA polymerase IV (EC 2.7.7.7)

CRON 10.
PSEEN2356	Pseudomonas aeruginosa PAO1	* Pseudomonas entomophila L48 Site: position = -33 score = 5.44281 sequence = ACTGTATGAATAATCAGT Gene: PSEEN2356: Radical SAM domain protein	* Pseudomonas putida KT2440 Site: position = -5 score = 5.34497 sequence = ACTGTATGAATACTCAGT Gene: PP2924: Radical SAM domain protein	Pseudomonas syringae pv. tomato str. DC3000	* Pseudomonas fluorescens Pf-5 Site: position = -32 score = 6.04087 sequence = ACTGTATATAAAAACAGT Gene: PFL_2524: Radical SAM domain protein	* Pseudomonas mendocina ymp Site: position = -34 score = 5.98518 sequence = ACTGTATAAAAAAACAGT Gene: Pmen_4146: Radical SAM domain protein	* Pseudomonas stutzeri A1501 Site: position = -7 score = 5.52414 sequence = ACTGTATATGCAAACAGT Gene: PST_3962: Radical SAM domain protein	Azotobacter vinelandii AvOP	Radical SAM domain protein
PSEEN2355	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48 Gene: PSEEN2355: Domain often clustered or fused with uracil-DNA glycosylase	Pseudomonas putida KT2440 Gene: PP2923: Domain often clustered or fused with uracil-DNA glycosylase	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO2624: Domain often clustered or fused with uracil-DNA glycosylase	Pseudomonas fluorescens Pf-5 Gene: PFL_2525: Domain often clustered or fused with uracil-DNA glycosylase	Pseudomonas mendocina ymp Gene: Pmen_4147: Domain often clustered or fused with uracil-DNA glycosylase	Pseudomonas stutzeri A1501 Gene: PST_3963: Domain often clustered or fused with uracil-DNA glycosylase	Azotobacter vinelandii AvOP	Domain often clustered or fused with uracil-DNA glycosylase

CRON 11.
ruvC	Pseudomonas aeruginosa PAO1 Gene: PA0965: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)	Pseudomonas entomophila L48 Gene: PSEEN4094: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)	Pseudomonas putida KT2440 Gene: PP1215: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO3979: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)	Pseudomonas fluorescens Pf-5 Gene: PFL_4765: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)	* Pseudomonas mendocina ymp Site: position = -25 score = 5.60297 sequence = ACTGGATAAATAGACAGT Gene: Pmen_1270: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)	* Pseudomonas stutzeri A1501 Site: position = -29 score = 5.43966 sequence = ACTGGATAAATAGACAGC Gene: PST_2810: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)	Azotobacter vinelandii AvOP Gene: Avin_36710: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)	Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
ruvA	Pseudomonas aeruginosa PAO1 Gene: PA0966: Holliday junction DNA helicase RuvA	Pseudomonas entomophila L48 Gene: PSEEN4093: Holliday junction DNA helicase RuvA	Pseudomonas putida KT2440 Gene: PP1216: Holliday junction DNA helicase RuvA	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO3978: Holliday junction DNA helicase RuvA	Pseudomonas fluorescens Pf-5 Gene: PFL_4764: Holliday junction DNA helicase RuvA	Pseudomonas mendocina ymp Gene: Pmen_1271: Holliday junction DNA helicase RuvA	Pseudomonas stutzeri A1501 Gene: PST_2809: Holliday junction DNA helicase RuvA	Azotobacter vinelandii AvOP Gene: Avin_36700: Holliday junction DNA helicase RuvA	Holliday junction DNA helicase RuvA
ruvB	Pseudomonas aeruginosa PAO1 Gene: PA0967: Holliday junction DNA helicase RuvB	Pseudomonas entomophila L48 Gene: PSEEN4092: Holliday junction DNA helicase RuvB	Pseudomonas putida KT2440 Gene: PP1217: Holliday junction DNA helicase RuvB	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO3977: Holliday junction DNA helicase RuvB	Pseudomonas fluorescens Pf-5 Gene: PFL_4763: Holliday junction DNA helicase RuvB	Pseudomonas mendocina ymp Gene: Pmen_1272: Holliday junction DNA helicase RuvB	Pseudomonas stutzeri A1501 Gene: PST_2808: Holliday junction DNA helicase RuvB	Azotobacter vinelandii AvOP Gene: Avin_36690: Holliday junction DNA helicase RuvB	Holliday junction DNA helicase RuvB

CRON 12.
uvrB	Pseudomonas aeruginosa PAO1 Gene: PA3138: Excinuclease ABC subunit B	* Pseudomonas entomophila L48 Site: position = -43 score = 5.13477 sequence = ACTGGCTAAATTTACAGT Gene: PSEEN1636: Excinuclease ABC subunit B	* Pseudomonas putida KT2440 Site: position = -39 score = 4.97146 sequence = ACTGGCTAAATTTACAGC Gene: PP1974: Excinuclease ABC subunit B	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO2164: Excinuclease ABC subunit B	Pseudomonas fluorescens Pf-5 Gene: PFL_2046: Excinuclease ABC subunit B	Pseudomonas mendocina ymp Gene: Pmen_2737: Excinuclease ABC subunit B	Pseudomonas stutzeri A1501 Gene: PST_2997: Excinuclease ABC subunit B	Azotobacter vinelandii AvOP Gene: Avin_20100: Excinuclease ABC subunit B	Excinuclease ABC subunit B

CRON 13.
PF08774	* Pseudomonas aeruginosa PAO1 Site: position = -5 score = 5.16262 sequence = TCTGTATGCATGAACAGT Gene: PA1865: Hypothetical protein, restriction endonuclease-like VRR-NUC domain	* Pseudomonas entomophila L48 Site: position = -45 score = 5.52929 sequence = TCTGTATGTATAACCAGT Gene: PSEEN2643: Hypothetical protein, restriction endonuclease-like VRR-NUC domain	* Pseudomonas putida KT2440 Site: position = -46 score = 5.61966 sequence = TCTGTATGTATAAACAGT Gene: PP2838: Hypothetical protein, restriction endonuclease-like VRR-NUC domain	* Pseudomonas syringae pv. tomato str. DC3000 Site: position = -22 score = 4.86812 sequence = TCTGTACGGATAACCAGT Gene: PSPTO3272: Hypothetical protein, restriction endonuclease-like VRR-NUC domain	* Pseudomonas fluorescens Pf-5 Site: position = -37 score = 5.41947 sequence = TCTGTATGCATAACCAGT Gene: PFL_3199: Hypothetical protein, restriction endonuclease-like VRR-NUC domain	* Pseudomonas mendocina ymp Site: position = -21 score = 5.56158 sequence = TCTGTATAAAAAACCAGT Gene: Pmen_4110: Hypothetical protein, restriction endonuclease-like VRR-NUC domain	* Pseudomonas stutzeri A1501 Site: position = -60 score = 5.7179 sequence = ACTGTATAAATAGCCAGC Gene: PST_2108: Hypothetical protein, restriction endonuclease-like VRR-NUC domain	Azotobacter vinelandii AvOP Gene: Avin_23850: Hypothetical protein, restriction endonuclease-like VRR-NUC domain	Hypothetical protein, restriction endonuclease-like VRR-NUC domain
COG1199	Pseudomonas aeruginosa PAO1 Gene: PA1866: Rad3-related DNA helicases	Pseudomonas entomophila L48 Gene: PSEEN2644: Rad3-related DNA helicases	Pseudomonas putida KT2440 Gene: PP2839: Rad3-related DNA helicases	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO3036: Rad3-related DNA helicases	Pseudomonas fluorescens Pf-5 Gene: PFL_3198: Rad3-related DNA helicases	Pseudomonas mendocina ymp Gene: Pmen_4111: Rad3-related DNA helicases	Pseudomonas stutzeri A1501 Gene: PST_2107: Rad3-related DNA helicases	Azotobacter vinelandii AvOP	Rad3-related DNA helicases

CRON 14.
imuA	* Pseudomonas aeruginosa PAO1 Site: position = -153 score = 5.60012 sequence = ACTGTATTTACATACAGT Gene: PA0671: Predicted RecA/RadA recombinase	Pseudomonas entomophila L48 Gene: PSEEN2413: Predicted RecA/RadA recombinase	Pseudomonas putida KT2440 Gene: PP3117: Predicted RecA/RadA recombinase	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO2793: Predicted RecA/RadA recombinase	Pseudomonas fluorescens Pf-5 Gene: PFL_3699: Predicted RecA/RadA recombinase	* Pseudomonas mendocina ymp Site: position = -37 score = 5.72977 sequence = ACTGTATGCATAGACAGT Gene: Pmen_1936: Predicted RecA/RadA recombinase	* Pseudomonas stutzeri A1501 Site: position = 24 score = 5.72169 sequence = ACTGTATCTATATACAGT Gene: PST_2344: Predicted RecA/RadA recombinase	Azotobacter vinelandii AvOP	Predicted RecA/RadA recombinase
imuB	Pseudomonas aeruginosa PAO1 Gene: PA0670: DNA polymerase-like protein PA0670	Pseudomonas entomophila L48 Gene: PSEEN2414: DNA polymerase-like protein PA0670	Pseudomonas putida KT2440 Gene: PP3118: DNA polymerase-like protein PA0670	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO2794: DNA polymerase-like protein PA0670	Pseudomonas fluorescens Pf-5 Gene: PFL_3698: DNA polymerase-like protein PA0670	Pseudomonas mendocina ymp Gene: Pmen_1935: DNA polymerase-like protein PA0670	Pseudomonas stutzeri A1501 Gene: PST_2346: DNA polymerase-like protein PA0670	Azotobacter vinelandii AvOP	DNA polymerase-like protein PA0670
dnaE2	Pseudomonas aeruginosa PAO1 Gene: PA0669: DNA polymerase III alpha subunit (EC 2.7.7.7)	Pseudomonas entomophila L48 Gene: PSEEN2415: DNA polymerase III alpha subunit (EC 2.7.7.7)	Pseudomonas putida KT2440 Gene: PP_3119: DNA polymerase III alpha subunit (EC 2.7.7.7)	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO2795: DNA polymerase III alpha subunit (EC 2.7.7.7)	Pseudomonas fluorescens Pf-5 Gene: PFL_3697: DNA polymerase III alpha subunit (EC 2.7.7.7)	Pseudomonas mendocina ymp Gene: Pmen_1934: DNA polymerase III alpha subunit (EC 2.7.7.7)	Pseudomonas stutzeri A1501 Gene: PST_2347: DNA polymerase III alpha subunit (EC 2.7.7.7)	Azotobacter vinelandii AvOP	DNA polymerase III alpha subunit (EC 2.7.7.7)

CRON 15.
topB	Pseudomonas aeruginosa PAO1	* Pseudomonas entomophila L48 Site: position = -86 score = 5.61072 sequence = ACTGTACATACATACAGA Gene: PSEEN2193: DNA topoisomerase III (EC 5.99.1.2)	* Pseudomonas putida KT2440 Site: position = -86 score = 4.51991 sequence = CCTGTACATCCATCCAGA Gene: PP4019: DNA topoisomerase III (EC 5.99.1.2)	* Pseudomonas syringae pv. tomato str. DC3000 Site: position = -87 score = 5.18701 sequence = TCTGTATATCCATACAGA Gene: PSPTO2478: DNA topoisomerase III (EC 5.99.1.2)	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	* Pseudomonas stutzeri A1501 Site: position = -184 score = 5.33254 sequence = ACTGTATGTCCATACAGA Gene: PST_2913: DNA topoisomerase III (EC 5.99.1.2)	* Azotobacter vinelandii AvOP Site: position = -75 score = 5.11799 sequence = TCTGTATGGACATACAGA Gene: Avin_27190: DNA topoisomerase III (EC 5.99.1.2)	DNA topoisomerase III (EC 5.99.1.2)

CRON 16.
dinG	* Pseudomonas aeruginosa PAO1 Site: position = -70 score = 5.15255 sequence = ACTGAAAATTTATCCAGC Gene: PA1045: ATP-dependent helicase DinG/Rad3	* Pseudomonas entomophila L48 Site: position = -38 score = 5.35567 sequence = ACTGAAAATATATCCAGC Gene: PSEEN1273: ATP-dependent helicase DinG/Rad3	* Pseudomonas putida KT2440 Site: position = -38 score = 5.35567 sequence = ACTGAAAATATATCCAGC Gene: PP1125: ATP-dependent helicase DinG/Rad3	* Pseudomonas syringae pv. tomato str. DC3000 Site: position = -48 score = 5.15255 sequence = ACTGAAAATTTATCCAGC Gene: PSPTO4120: ATP-dependent helicase DinG/Rad3	* Pseudomonas fluorescens Pf-5 Site: position = -39 score = 5.15255 sequence = ACTGAAAATTTATCCAGC Gene: PFL_1279: ATP-dependent helicase DinG/Rad3	* Pseudomonas mendocina ymp Site: position = -37 score = 5.15255 sequence = ACTGAAAATTTATCCAGC Gene: Pmen_1427: ATP-dependent helicase DinG/Rad3	* Pseudomonas stutzeri A1501 Site: position = -120 score = 5.44604 sequence = ACTGAAAATATATACAGC Gene: PST_1523: ATP-dependent helicase DinG/Rad3	* Azotobacter vinelandii AvOP Site: position = -36 score = 4.96864 sequence = ACTGAAAATTTGTCCAGT Gene: Avin_19450: ATP-dependent helicase DinG/Rad3	ATP-dependent helicase DinG/Rad3

CRON 17.
PF07130	* Pseudomonas aeruginosa PAO1 Site: position = -57 score = 5.54602 sequence = ACTGTATGGATAACCAGT Gene: PA3413: Conserved hypothetical protein	* Pseudomonas entomophila L48 Site: position = -59 score = 5.82613 sequence = ACTGTATAAAGATACAGT Gene: PSEEN4605: Conserved hypothetical protein	* Pseudomonas putida KT2440 Site: position = -58 score = 5.88182 sequence = ACTGTATATAGATACAGT Gene: PP4616: Conserved hypothetical protein	* Pseudomonas syringae pv. tomato str. DC3000 Site: position = -224 score = 5.88734 sequence = ACTGTATAAAAACACAGT Gene: PSPTO1197: Conserved hypothetical protein	* Pseudomonas fluorescens Pf-5 Site: position = -111 score = 5.31655 sequence = CCTGTATATAGATACAGT Gene: PFL_0975: Conserved hypothetical protein	* Pseudomonas mendocina ymp Site: position = -57 score = 5.46856 sequence = ACTGTACAAACAACCAGT Gene: Pmen_3241: Conserved hypothetical protein	* Pseudomonas stutzeri A1501 Site: position = -47 score = 5.27856 sequence = GCTGTACAAATAAACAGT Gene: PST_3169: Conserved hypothetical protein	Azotobacter vinelandii AvOP	Conserved hypothetical protein

CRON 18.
PA2288	* Pseudomonas aeruginosa PAO1 Site: position = -58 score = 5.67272 sequence = ACTGTATGAATGTACAGT Gene: PA2288: Hypothetical protein	Pseudomonas entomophila L48	Pseudomonas putida KT2440	Pseudomonas syringae pv. tomato str. DC3000	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Hypothetical protein

CRON 19.
PF07867	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	* Pseudomonas putida KT2440 Site: position = 9 score = 5.51195 sequence = ACTGTACGAATATACAGC Gene: PP3773: Hypothetical protein	Pseudomonas syringae pv. tomato str. DC3000	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Hypothetical protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog LexA - Pseudomonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --