Regulog LexA - Pseudomonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LexA
- By taxonomy - Pseudomonadaceae
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Genome | Genes | Operons |
|---|---|---|
| Pseudomonas aeruginosa PAO1 | 16 | 11 |
| Pseudomonas entomophila L48 | 18 | 14 |
| Pseudomonas putida KT2440 | 20 | 16 |
| Pseudomonas syringae pv. tomato str. DC3000 | 13 | 11 |
| Pseudomonas fluorescens Pf-5 | 18 | 12 |
| Pseudomonas mendocina ymp | 20 | 12 |
| Pseudomonas stutzeri A1501 | 18 | 12 |
| Azotobacter vinelandii AvOP | 7 | 5 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| umuD |
|
|
|
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -46 score = 5.29579 sequence = ACTGTACGTCTATACAGT Gene: PSPTOA0002: DNA polymerase V, subunit UmuD |
*
Pseudomonas fluorescens Pf-5 Site: position = -9 score = 5.23105 sequence = ACTGTATTTTTGTACAGT Gene: PFL_4691: DNA polymerase V, subunit UmuD |
|
|
|
DNA polymerase V, subunit UmuD |
| umuC |
|
|
|
Gene: PSPTO0591: DNA polymerase V, subunit UmuC |
2
Pseudomonas fluorescens Pf-5 Gene: PFL_4692: DNA polymerase V, subunit UmuC Gene: PFL_2022: DNA polymerase V, subunit UmuC |
|
|
|
DNA polymerase V, subunit UmuC |
| CRON 2. | |||||||||
| PF07867 |
Gene: PA2381: Conserved hypothetical protein |
*
Pseudomonas entomophila L48 Site: position = -36 score = 5.62122 sequence = ACTGTATGCACATACAGC Gene: PSEEN1950: Conserved hypothetical protein |
*2
Pseudomonas putida KT2440 Site: position = -36 score = 5.28986 sequence = ACTGTCTATGCATACAGT Gene: PP3901: Conserved hypothetical protein Site: position = -36 score = 5.29588 sequence = ACTGTATGTGCATACAGC Gene: PP2452: Conserved hypothetical protein |
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -37 score = 4.83884 sequence = ACTGTATGCCCGTACAGC Gene: PSPTO2365: Conserved hypothetical protein |
*
Pseudomonas fluorescens Pf-5 Site: position = -5 score = 5.274 sequence = ACTGTATGCACGTACAGC Gene: PFL_2098: Conserved hypothetical protein |
|
|
|
Conserved hypothetical protein |
| CRON 3. | |||||||||
| recN |
*
Pseudomonas aeruginosa PAO1 Site: position = -41 score = 5.86786 sequence = ACTGTATAAATAACCAGA Gene: PA4763: DNA repair protein RecN |
*
Pseudomonas entomophila L48 Site: position = -41 score = 5.9906 sequence = ACTGTATAAATATCCAGA Gene: PSEEN0776: DNA repair protein RecN |
*
Pseudomonas putida KT2440 Site: position = -41 score = 5.86786 sequence = ACTGTATAAATAACCAGA Gene: PP4729: DNA repair protein RecN |
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -40 score = 5.9906 sequence = ACTGTATAAATATCCAGA Gene: PSPTO4507: DNA repair protein RecN |
*
Pseudomonas fluorescens Pf-5 Site: position = -41 score = 5.86786 sequence = ACTGTATAAATAACCAGA Gene: PFL_0825: DNA repair protein RecN |
*
Pseudomonas mendocina ymp Site: position = -40 score = 5.86786 sequence = ACTGTATAAATAACCAGA Gene: Pmen_3626: DNA repair protein RecN |
*
Pseudomonas stutzeri A1501 Site: position = -41 score = 5.7179 sequence = ACTGTATAAATAGCCAGC Gene: PST_3329: DNA repair protein RecN |
*
Azotobacter vinelandii AvOP Site: position = -40 score = 5.91609 sequence = ACTGTATATATACACAGA Gene: Avin_42990: DNA repair protein RecN |
DNA repair protein RecN |
| CRON 4. | |||||||||
| lexA |
*
Pseudomonas aeruginosa PAO1 Site: position = -45 score = 5.50544 sequence = ACTGTATATAATCCCAGT Site: position = -26 score = 5.39208 sequence = ACTGGATAAAAACACAGA Gene: PA3007: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Pseudomonas entomophila L48 Site: position = -47 score = 5.50544 sequence = ACTGTATATAATCCCAGT Site: position = -28 score = 5.74523 sequence = ACTGTATAAAAAGACAGA Gene: PSEEN3721: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Pseudomonas putida KT2440 Site: position = -46 score = 5.72602 sequence = ACTGTATATAATTCCAGT Site: position = -27 score = 5.40056 sequence = ACTGTACAAAAAGACAGA Gene: PP2143: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -46 score = 5.50544 sequence = ACTGTATATAATCCCAGT Site: position = -27 score = 5.65486 sequence = ACTGTATAAAAAGCCAGA Gene: PSPTO3510: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Pseudomonas fluorescens Pf-5 Site: position = -46 score = 5.50544 sequence = ACTGTATATAATCCCAGT Site: position = -27 score = 5.74523 sequence = ACTGTATAAAAAGACAGA Gene: PFL_1949: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Pseudomonas mendocina ymp Site: position = -45 score = 5.50544 sequence = ACTGTATATAATCCCAGT Site: position = -26 score = 5.74523 sequence = ACTGTATAAAAAGACAGA Gene: Pmen_1587: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Pseudomonas stutzeri A1501 Site: position = -215 score = 5.50544 sequence = ACTGTATATAATCCCAGT Site: position = -196 score = 5.51131 sequence = ACTGTATAAAAGAACAGA Gene: PST_1734: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Azotobacter vinelandii AvOP Site: position = -46 score = 5.59581 sequence = ACTGTATATAATCACAGT Site: position = -27 score = 5.37662 sequence = ACTGGATAAAAAGACAGA Gene: Avin_14510: SOS-response repressor and protease LexA (EC 3.4.21.88) |
SOS-response repressor and protease LexA (EC 3.4.21.88) |
| sulA |
Gene: PA3008: Cell division inhibitor sulA |
Gene: PSEEN3722: Cell division inhibitor sulA |
Gene: PP2142: Cell division inhibitor sulA |
Gene: PSPTO3511: Cell division inhibitor sulA |
Gene: PFL_1948: Cell division inhibitor sulA |
Gene: Pmen_1586: Cell division inhibitor sulA |
Gene: PST_1733: Cell division inhibitor sulA |
Gene: Avin_14500: Cell division inhibitor sulA |
Cell division inhibitor sulA |
| CRON 5. | |||||||||
| recA |
*
Pseudomonas aeruginosa PAO1 Site: position = -60 score = 5.59336 sequence = ACTGTCTACTTATACAGT Gene: PA3617: Recombinase A |
*
Pseudomonas entomophila L48 Site: position = -60 score = 5.22474 sequence = ACTGGCTACTTATACAGT Gene: PSEEN4128: Recombinase A |
*
Pseudomonas putida KT2440 Site: position = -60 score = 4.83933 sequence = ACTGGCTACTTATACAGG Gene: PP1629: Recombinase A |
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -67 score = 5.09849 sequence = ACTGTTTACTTATACAGG Gene: PSPTO4033: Recombinase A |
*
Pseudomonas fluorescens Pf-5 Site: position = -57 score = 4.83933 sequence = ACTGGCTACTTATACAGG Gene: PFL_1231: Recombinase A |
*2
Pseudomonas mendocina ymp Site: position = -61 score = 5.22474 sequence = ACTGGCTACTTATACAGT Gene: Pmen_3015: Recombinase A Gene: Pmen_0425: Recombinase A |
*
Pseudomonas stutzeri A1501 Site: position = -57 score = 5.59336 sequence = ACTGTCTACTTATACAGT Gene: PST_1508: Recombinase A |
*
Azotobacter vinelandii AvOP Site: position = -60 score = 5.59336 sequence = ACTGTCTACTTATACAGT Gene: Avin_38560: Recombinase A |
Recombinase A |
| recX |
Gene: PA3616: Regulatory protein RecX |
Gene: PSEEN4127: Regulatory protein RecX |
Gene: PP1630: Regulatory protein RecX |
Gene: PSPTO4032: Regulatory protein RecX |
Gene: PFL_1232: Regulatory protein RecX |
Gene: Pmen_3014: Regulatory protein RecX |
Gene: PST_1509: Regulatory protein RecX |
Gene: Avin_38550: Regulatory protein RecX |
Regulatory protein RecX |
| CRON 6. | |||||||||
| yebG |
*
Pseudomonas aeruginosa PAO1 Site: position = -57 score = 5.54602 sequence = ACTGTATGGATAACCAGT Gene: PA3413: SOS regulon DNA damage-inducible protein |
*
Pseudomonas entomophila L48 Site: position = -59 score = 5.82613 sequence = ACTGTATAAAGATACAGT Gene: PSEEN4605: SOS regulon DNA damage-inducible protein |
*
Pseudomonas putida KT2440 Site: position = -58 score = 5.88182 sequence = ACTGTATATAGATACAGT Gene: PP4616: SOS regulon DNA damage-inducible protein |
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -224 score = 5.88734 sequence = ACTGTATAAAAACACAGT Gene: PSPTO1197: SOS regulon DNA damage-inducible protein |
*
Pseudomonas fluorescens Pf-5 Site: position = -111 score = 5.31655 sequence = CCTGTATATAGATACAGT Gene: PFL_0975: SOS regulon DNA damage-inducible protein |
*
Pseudomonas mendocina ymp Site: position = -57 score = 5.46856 sequence = ACTGTACAAACAACCAGT Gene: Pmen_3241: SOS regulon DNA damage-inducible protein |
*
Pseudomonas stutzeri A1501 Site: position = -47 score = 5.27856 sequence = GCTGTACAAATAAACAGT Gene: PST_3169: SOS regulon DNA damage-inducible protein |
|
SOS regulon DNA damage-inducible protein |
| CRON 7. | |||||||||
| PF04055 |
*
Pseudomonas aeruginosa PAO1 Site: position = -37 score = 5.61187 sequence = ACTGTATCCATATACAGT Gene: PA0069: DNA repair photolyase |
*
Pseudomonas entomophila L48 Site: position = -35 score = 5.67157 sequence = ACTGTATTCATATACAGT Gene: PSEEN0052: DNA repair photolyase |
*
Pseudomonas putida KT2440 Site: position = -31 score = 5.96049 sequence = ACTGTATATTAATACAGT Gene: PP0099: DNA repair photolyase |
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -34 score = 5.29172 sequence = ACTGTACGGATAAACAGT Gene: PSPTO5254: DNA repair photolyase |
*
Pseudomonas fluorescens Pf-5 Site: position = -32 score = 5.45919 sequence = ACTGTATGTGCATACAGT Gene: PFL_0057: DNA repair photolyase |
*
Pseudomonas mendocina ymp Site: position = -34 score = 5.45217 sequence = ACTGTTCATATATACAGT Gene: Pmen_4466: DNA repair photolyase |
*
Pseudomonas stutzeri A1501 Site: position = 217 score = 5.97726 sequence = ACTGTATATATAAACAGC Gene: PST_4159: DNA repair photolyase |
|
DNA repair photolyase |
| CRON 8. | |||||||||
| PFL_4225 |
|
|
|
|
*
Pseudomonas fluorescens Pf-5 Site: position = -35 score = 5.80249 sequence = ACTGTATGCATATACAGC Gene: PFL_4225: Hypothetical protein, putative peptidase |
|
|
|
Hypothetical protein, putative peptidase |
| PA0922 |
*
Pseudomonas aeruginosa PAO1 Site: position = -69 score = 5.36839 sequence = ACTGTATATTCGTACAGC Gene: PA0922: Predicted replication protein |
*
Pseudomonas entomophila L48 Site: position = -32 score = 5.70196 sequence = GCTGTATATAAATACAGT Gene: PSEEN3760: Predicted replication protein |
*
Pseudomonas putida KT2440 Site: position = -32 score = 5.70196 sequence = GCTGTATATAAATACAGT Gene: PP2109: Predicted replication protein |
|
Gene: PFL_4224: Predicted replication protein |
*
Pseudomonas mendocina ymp Site: position = -75 score = 5.2465 sequence = ACTGTTTATTTGTACAGT Gene: Pmen_2106: Predicted replication protein |
|
|
Predicted replication protein |
| CRON 9. | |||||||||
| dinB |
Gene: PA0923: DNA polymerase IV (EC 2.7.7.7) |
*
Pseudomonas entomophila L48 Site: position = -32 score = 5.3395 sequence = TCTGTATGAATTTACAGT Gene: PSEEN4107: DNA polymerase IV (EC 2.7.7.7) |
*
Pseudomonas putida KT2440 Site: position = -32 score = 5.3395 sequence = TCTGTATGAATTTACAGT Gene: PP1203: DNA polymerase IV (EC 2.7.7.7) |
Gene: PSPTO3990: DNA polymerase IV (EC 2.7.7.7) |
Gene: PFL_1254: DNA polymerase IV (EC 2.7.7.7) |
Gene: Pmen_1726: DNA polymerase IV (EC 2.7.7.7) |
Gene: PST_2990: DNA polymerase IV (EC 2.7.7.7) |
Gene: Avin_37100: DNA polymerase IV (EC 2.7.7.7) |
DNA polymerase IV (EC 2.7.7.7) |
| CRON 10. | |||||||||
| PSEEN2356 |
|
*
Pseudomonas entomophila L48 Site: position = -33 score = 5.44281 sequence = ACTGTATGAATAATCAGT Gene: PSEEN2356: Radical SAM domain protein |
*
Pseudomonas putida KT2440 Site: position = -5 score = 5.34497 sequence = ACTGTATGAATACTCAGT Gene: PP2924: Radical SAM domain protein |
|
*
Pseudomonas fluorescens Pf-5 Site: position = -32 score = 6.04087 sequence = ACTGTATATAAAAACAGT Gene: PFL_2524: Radical SAM domain protein |
*
Pseudomonas mendocina ymp Site: position = -34 score = 5.98518 sequence = ACTGTATAAAAAAACAGT Gene: Pmen_4146: Radical SAM domain protein |
*
Pseudomonas stutzeri A1501 Site: position = -7 score = 5.52414 sequence = ACTGTATATGCAAACAGT Gene: PST_3962: Radical SAM domain protein |
|
Radical SAM domain protein |
| PSEEN2355 |
|
Gene: PSEEN2355: Domain often clustered or fused with uracil-DNA glycosylase |
Gene: PP2923: Domain often clustered or fused with uracil-DNA glycosylase |
Gene: PSPTO2624: Domain often clustered or fused with uracil-DNA glycosylase |
Gene: PFL_2525: Domain often clustered or fused with uracil-DNA glycosylase |
Gene: Pmen_4147: Domain often clustered or fused with uracil-DNA glycosylase |
Gene: PST_3963: Domain often clustered or fused with uracil-DNA glycosylase |
|
Domain often clustered or fused with uracil-DNA glycosylase |
| CRON 11. | |||||||||
| ruvC |
Gene: PA0965: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
Gene: PSEEN4094: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
Gene: PP1215: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
Gene: PSPTO3979: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
Gene: PFL_4765: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
*
Pseudomonas mendocina ymp Site: position = -25 score = 5.60297 sequence = ACTGGATAAATAGACAGT Gene: Pmen_1270: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
*
Pseudomonas stutzeri A1501 Site: position = -29 score = 5.43966 sequence = ACTGGATAAATAGACAGC Gene: PST_2810: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
Gene: Avin_36710: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
| ruvA |
Gene: PA0966: Holliday junction DNA helicase RuvA |
Gene: PSEEN4093: Holliday junction DNA helicase RuvA |
Gene: PP1216: Holliday junction DNA helicase RuvA |
Gene: PSPTO3978: Holliday junction DNA helicase RuvA |
Gene: PFL_4764: Holliday junction DNA helicase RuvA |
Gene: Pmen_1271: Holliday junction DNA helicase RuvA |
Gene: PST_2809: Holliday junction DNA helicase RuvA |
Gene: Avin_36700: Holliday junction DNA helicase RuvA |
Holliday junction DNA helicase RuvA |
| ruvB |
Gene: PA0967: Holliday junction DNA helicase RuvB |
Gene: PSEEN4092: Holliday junction DNA helicase RuvB |
Gene: PP1217: Holliday junction DNA helicase RuvB |
Gene: PSPTO3977: Holliday junction DNA helicase RuvB |
Gene: PFL_4763: Holliday junction DNA helicase RuvB |
Gene: Pmen_1272: Holliday junction DNA helicase RuvB |
Gene: PST_2808: Holliday junction DNA helicase RuvB |
Gene: Avin_36690: Holliday junction DNA helicase RuvB |
Holliday junction DNA helicase RuvB |
| CRON 12. | |||||||||
| uvrB |
Gene: PA3138: Excinuclease ABC subunit B |
*
Pseudomonas entomophila L48 Site: position = -43 score = 5.13477 sequence = ACTGGCTAAATTTACAGT Gene: PSEEN1636: Excinuclease ABC subunit B |
*
Pseudomonas putida KT2440 Site: position = -39 score = 4.97146 sequence = ACTGGCTAAATTTACAGC Gene: PP1974: Excinuclease ABC subunit B |
Gene: PSPTO2164: Excinuclease ABC subunit B |
Gene: PFL_2046: Excinuclease ABC subunit B |
Gene: Pmen_2737: Excinuclease ABC subunit B |
Gene: PST_2997: Excinuclease ABC subunit B |
Gene: Avin_20100: Excinuclease ABC subunit B |
Excinuclease ABC subunit B |
| CRON 13. | |||||||||
| PF08774 |
*
Pseudomonas aeruginosa PAO1 Site: position = -5 score = 5.16262 sequence = TCTGTATGCATGAACAGT Gene: PA1865: Hypothetical protein, restriction endonuclease-like VRR-NUC domain |
*
Pseudomonas entomophila L48 Site: position = -45 score = 5.52929 sequence = TCTGTATGTATAACCAGT Gene: PSEEN2643: Hypothetical protein, restriction endonuclease-like VRR-NUC domain |
*
Pseudomonas putida KT2440 Site: position = -46 score = 5.61966 sequence = TCTGTATGTATAAACAGT Gene: PP2838: Hypothetical protein, restriction endonuclease-like VRR-NUC domain |
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -22 score = 4.86812 sequence = TCTGTACGGATAACCAGT Gene: PSPTO3272: Hypothetical protein, restriction endonuclease-like VRR-NUC domain |
*
Pseudomonas fluorescens Pf-5 Site: position = -37 score = 5.41947 sequence = TCTGTATGCATAACCAGT Gene: PFL_3199: Hypothetical protein, restriction endonuclease-like VRR-NUC domain |
*
Pseudomonas mendocina ymp Site: position = -21 score = 5.56158 sequence = TCTGTATAAAAAACCAGT Gene: Pmen_4110: Hypothetical protein, restriction endonuclease-like VRR-NUC domain |
*
Pseudomonas stutzeri A1501 Site: position = -60 score = 5.7179 sequence = ACTGTATAAATAGCCAGC Gene: PST_2108: Hypothetical protein, restriction endonuclease-like VRR-NUC domain |
Gene: Avin_23850: Hypothetical protein, restriction endonuclease-like VRR-NUC domain |
Hypothetical protein, restriction endonuclease-like VRR-NUC domain |
| COG1199 |
Gene: PA1866: Rad3-related DNA helicases |
Gene: PSEEN2644: Rad3-related DNA helicases |
Gene: PP2839: Rad3-related DNA helicases |
Gene: PSPTO3036: Rad3-related DNA helicases |
Gene: PFL_3198: Rad3-related DNA helicases |
Gene: Pmen_4111: Rad3-related DNA helicases |
Gene: PST_2107: Rad3-related DNA helicases |
|
Rad3-related DNA helicases |
| CRON 14. | |||||||||
| imuA |
*
Pseudomonas aeruginosa PAO1 Site: position = -153 score = 5.60012 sequence = ACTGTATTTACATACAGT Gene: PA0671: Predicted RecA/RadA recombinase |
Gene: PSEEN2413: Predicted RecA/RadA recombinase |
Gene: PP3117: Predicted RecA/RadA recombinase |
Gene: PSPTO2793: Predicted RecA/RadA recombinase |
Gene: PFL_3699: Predicted RecA/RadA recombinase |
*
Pseudomonas mendocina ymp Site: position = -37 score = 5.72977 sequence = ACTGTATGCATAGACAGT Gene: Pmen_1936: Predicted RecA/RadA recombinase |
*
Pseudomonas stutzeri A1501 Site: position = 24 score = 5.72169 sequence = ACTGTATCTATATACAGT Gene: PST_2344: Predicted RecA/RadA recombinase |
|
Predicted RecA/RadA recombinase |
| imuB |
Gene: PA0670: DNA polymerase-like protein PA0670 |
Gene: PSEEN2414: DNA polymerase-like protein PA0670 |
Gene: PP3118: DNA polymerase-like protein PA0670 |
Gene: PSPTO2794: DNA polymerase-like protein PA0670 |
Gene: PFL_3698: DNA polymerase-like protein PA0670 |
Gene: Pmen_1935: DNA polymerase-like protein PA0670 |
Gene: PST_2346: DNA polymerase-like protein PA0670 |
|
DNA polymerase-like protein PA0670 |
| dnaE2 |
Gene: PA0669: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: PSEEN2415: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: PP_3119: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: PSPTO2795: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: PFL_3697: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: Pmen_1934: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: PST_2347: DNA polymerase III alpha subunit (EC 2.7.7.7) |
|
DNA polymerase III alpha subunit (EC 2.7.7.7) |
| CRON 15. | |||||||||
| topB |
|
*
Pseudomonas entomophila L48 Site: position = -86 score = 5.61072 sequence = ACTGTACATACATACAGA Gene: PSEEN2193: DNA topoisomerase III (EC 5.99.1.2) |
*
Pseudomonas putida KT2440 Site: position = -86 score = 4.51991 sequence = CCTGTACATCCATCCAGA Gene: PP4019: DNA topoisomerase III (EC 5.99.1.2) |
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -87 score = 5.18701 sequence = TCTGTATATCCATACAGA Gene: PSPTO2478: DNA topoisomerase III (EC 5.99.1.2) |
|
|
*
Pseudomonas stutzeri A1501 Site: position = -184 score = 5.33254 sequence = ACTGTATGTCCATACAGA Gene: PST_2913: DNA topoisomerase III (EC 5.99.1.2) |
*
Azotobacter vinelandii AvOP Site: position = -75 score = 5.11799 sequence = TCTGTATGGACATACAGA Gene: Avin_27190: DNA topoisomerase III (EC 5.99.1.2) |
DNA topoisomerase III (EC 5.99.1.2) |
| CRON 16. | |||||||||
| dinG |
*
Pseudomonas aeruginosa PAO1 Site: position = -70 score = 5.15255 sequence = ACTGAAAATTTATCCAGC Gene: PA1045: ATP-dependent helicase DinG/Rad3 |
*
Pseudomonas entomophila L48 Site: position = -38 score = 5.35567 sequence = ACTGAAAATATATCCAGC Gene: PSEEN1273: ATP-dependent helicase DinG/Rad3 |
*
Pseudomonas putida KT2440 Site: position = -38 score = 5.35567 sequence = ACTGAAAATATATCCAGC Gene: PP1125: ATP-dependent helicase DinG/Rad3 |
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -48 score = 5.15255 sequence = ACTGAAAATTTATCCAGC Gene: PSPTO4120: ATP-dependent helicase DinG/Rad3 |
*
Pseudomonas fluorescens Pf-5 Site: position = -39 score = 5.15255 sequence = ACTGAAAATTTATCCAGC Gene: PFL_1279: ATP-dependent helicase DinG/Rad3 |
*
Pseudomonas mendocina ymp Site: position = -37 score = 5.15255 sequence = ACTGAAAATTTATCCAGC Gene: Pmen_1427: ATP-dependent helicase DinG/Rad3 |
*
Pseudomonas stutzeri A1501 Site: position = -120 score = 5.44604 sequence = ACTGAAAATATATACAGC Gene: PST_1523: ATP-dependent helicase DinG/Rad3 |
*
Azotobacter vinelandii AvOP Site: position = -36 score = 4.96864 sequence = ACTGAAAATTTGTCCAGT Gene: Avin_19450: ATP-dependent helicase DinG/Rad3 |
ATP-dependent helicase DinG/Rad3 |
| CRON 17. | |||||||||
| PF07130 |
*
Pseudomonas aeruginosa PAO1 Site: position = -57 score = 5.54602 sequence = ACTGTATGGATAACCAGT Gene: PA3413: Conserved hypothetical protein |
*
Pseudomonas entomophila L48 Site: position = -59 score = 5.82613 sequence = ACTGTATAAAGATACAGT Gene: PSEEN4605: Conserved hypothetical protein |
*
Pseudomonas putida KT2440 Site: position = -58 score = 5.88182 sequence = ACTGTATATAGATACAGT Gene: PP4616: Conserved hypothetical protein |
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -224 score = 5.88734 sequence = ACTGTATAAAAACACAGT Gene: PSPTO1197: Conserved hypothetical protein |
*
Pseudomonas fluorescens Pf-5 Site: position = -111 score = 5.31655 sequence = CCTGTATATAGATACAGT Gene: PFL_0975: Conserved hypothetical protein |
*
Pseudomonas mendocina ymp Site: position = -57 score = 5.46856 sequence = ACTGTACAAACAACCAGT Gene: Pmen_3241: Conserved hypothetical protein |
*
Pseudomonas stutzeri A1501 Site: position = -47 score = 5.27856 sequence = GCTGTACAAATAAACAGT Gene: PST_3169: Conserved hypothetical protein |
|
Conserved hypothetical protein |
| CRON 18. | |||||||||
| PA2288 |
*
Pseudomonas aeruginosa PAO1 Site: position = -58 score = 5.67272 sequence = ACTGTATGAATGTACAGT Gene: PA2288: Hypothetical protein |
|
|
|
|
|
|
|
Hypothetical protein |
| CRON 19. | |||||||||
| PF07867 |
|
|
*
Pseudomonas putida KT2440 Site: position = 9 score = 5.51195 sequence = ACTGTACGAATATACAGC Gene: PP3773: Hypothetical protein |
|
|
|
|
|
Hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |