Regulon of LexA in Pseudomonas syringae pv. tomato str. DC3000
| Regulator type: | Transcription factor |
| TF locus tag: | PSPTO3510 |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Regulog: | LexA - Pseudomonadaceae |
| Statistics of regulated genes: | |
| - Genes | 13 |
| - Operons | 11 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LexA
- By taxonomy - Pseudomonadaceae
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -48
Score: 5.2 Sequence: ACTGAAAATTTATCCAGC
Locus tag: PSPTO4120
Name: dinG Funciton: ATP-dependent helicase DinG/Rad3 |
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dinG
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ATP-dependent helicase DinG/Rad3
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Position: -224
Score: 5.9 Sequence: ACTGTATAAAAACACAGT
Locus tag: PSPTO1197
Name: yebG Funciton: SOS regulon DNA damage-inducible protein |
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yebG
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SOS regulon DNA damage-inducible protein
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Position: -67
Score: 5.1 Sequence: ACTGTTTACTTATACAGG
Locus tag: PSPTO4033
Name: recA Funciton: Recombinase A
Locus tag: PSPTO4032
Name: recX Funciton: Regulatory protein RecX |
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recA
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Recombinase A
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recX
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Regulatory protein RecX
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Position: -87
Score: 5.2 Sequence: TCTGTATATCCATACAGA
Locus tag: PSPTO2478
Name: topB Funciton: DNA topoisomerase III (EC 5.99.1.2) |
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topB
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DNA topoisomerase III (EC 5.99.1.2)
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Position: -46
Score: 5.3 Sequence: ACTGTACGTCTATACAGT
Locus tag: PSPTOA0002
Name: umuD Funciton: DNA polymerase V, subunit UmuD |
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umuD
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DNA polymerase V, subunit UmuD
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Position: -37
Score: 4.8 Sequence: ACTGTATGCCCGTACAGC
Locus tag: PSPTO2365
Name: PF07867 Funciton: Conserved hypothetical protein |
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PF07867
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Conserved hypothetical protein
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Position: -46
Score: 5.5 Sequence: ACTGTATATAATCCCAGT
Position: -27
Score: 5.7 Sequence: ACTGTATAAAAAGCCAGA
Locus tag: PSPTO3510
Name: lexA Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
Locus tag: PSPTO3511
Name: sulA Funciton: Cell division inhibitor sulA |
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lexA
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SOS-response repressor and protease LexA (EC 3.4.21.88)
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sulA
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Cell division inhibitor sulA
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Position: -40
Score: 6 Sequence: ACTGTATAAATATCCAGA
Locus tag: PSPTO4507
Name: recN Funciton: DNA repair protein RecN |
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recN
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DNA repair protein RecN
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Position: -34
Score: 5.3 Sequence: ACTGTACGGATAAACAGT
Locus tag: PSPTO5254
Name: PF04055 Funciton: DNA repair photolyase |
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PF04055
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DNA repair photolyase
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Position: -22
Score: 4.9 Sequence: TCTGTACGGATAACCAGT
Locus tag: PSPTO3272
Name: PF08774 Funciton: Hypothetical protein, restriction endonuclease-like VRR-NUC domain |
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PF08774
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Hypothetical protein, restriction endonuclease-like VRR-NUC domain
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Position: -224
Score: 5.9 Sequence: ACTGTATAAAAACACAGT
Locus tag: PSPTO1197
Name: PF07130 Funciton: Conserved hypothetical protein |
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PF07130
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Conserved hypothetical protein
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |