Regulon of LexA in Pseudomonas fluorescens Pf-5
| Regulator type: | Transcription factor |
| TF locus tag: | PFL_1949 |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Regulog: | LexA - Pseudomonadaceae |
| Statistics of regulated genes: | |
| - Genes | 18 |
| - Operons | 12 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LexA
- By taxonomy - Pseudomonadaceae
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -39
Score: 5.2 Sequence: ACTGAAAATTTATCCAGC
Locus tag: PFL_1279
Name: dinG Funciton: ATP-dependent helicase DinG/Rad3 |
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dinG
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ATP-dependent helicase DinG/Rad3
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Position: -111
Score: 5.3 Sequence: CCTGTATATAGATACAGT
Locus tag: PFL_0975
Name: yebG Funciton: SOS regulon DNA damage-inducible protein |
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yebG
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SOS regulon DNA damage-inducible protein
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Position: -9
Score: 5.2 Sequence: ACTGTATTTTTGTACAGT
Locus tag: PFL_4691
Name: umuD Funciton: DNA polymerase V, subunit UmuD
Locus tag: PFL_4692
Name: umuC Funciton: DNA polymerase V, subunit UmuC |
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umuD
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DNA polymerase V, subunit UmuD
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umuC
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DNA polymerase V, subunit UmuC
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Position: -57
Score: 4.8 Sequence: ACTGGCTACTTATACAGG
Locus tag: PFL_1231
Name: recA Funciton: Recombinase A
Locus tag: PFL_1232
Name: recX Funciton: Regulatory protein RecX |
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recA
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Recombinase A
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recX
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Regulatory protein RecX
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Position: -32
Score: 5.5 Sequence: ACTGTATGTGCATACAGT
Locus tag: PFL_0057
Name: PF04055 Funciton: DNA repair photolyase |
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PF04055
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DNA repair photolyase
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Position: -35
Score: 5.8 Sequence: ACTGTATGCATATACAGC
Locus tag: PFL_4225
Name: PFL_4225 Funciton: Hypothetical protein, putative peptidase
Locus tag: PFL_4224
Name: PA0922 Funciton: Predicted replication protein |
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PFL_4225
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Hypothetical protein, putative peptidase
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PA0922
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Predicted replication protein
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Position: -5
Score: 5.3 Sequence: ACTGTATGCACGTACAGC
Locus tag: PFL_2098
Name: PF07867 Funciton: Conserved hypothetical protein |
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PF07867
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Conserved hypothetical protein
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Position: -37
Score: 5.4 Sequence: TCTGTATGCATAACCAGT
Locus tag: PFL_3199
Name: PF08774 Funciton: Hypothetical protein, restriction endonuclease-like VRR-NUC domain
Locus tag: PFL_3198
Name: COG1199 Funciton: Rad3-related DNA helicases |
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PF08774
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Hypothetical protein, restriction endonuclease-like VRR-NUC domain
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COG1199
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Rad3-related DNA helicases
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Position: -46
Score: 5.5 Sequence: ACTGTATATAATCCCAGT
Position: -27
Score: 5.7 Sequence: ACTGTATAAAAAGACAGA
Locus tag: PFL_1949
Name: lexA Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
Locus tag: PFL_1948
Name: sulA Funciton: Cell division inhibitor sulA |
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lexA
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SOS-response repressor and protease LexA (EC 3.4.21.88)
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sulA
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Cell division inhibitor sulA
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Position: -41
Score: 5.9 Sequence: ACTGTATAAATAACCAGA
Locus tag: PFL_0825
Name: recN Funciton: DNA repair protein RecN |
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recN
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DNA repair protein RecN
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Position: -32
Score: 6 Sequence: ACTGTATATAAAAACAGT
Locus tag: PFL_2524
Name: PSEEN2356 Funciton: Radical SAM domain protein
Locus tag: PFL_2525
Name: PSEEN2355 Funciton: Domain often clustered or fused with uracil-DNA glycosylase |
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PSEEN2356
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Radical SAM domain protein
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PSEEN2355
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Domain often clustered or fused with uracil-DNA glycosylase
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Position: -111
Score: 5.3 Sequence: CCTGTATATAGATACAGT
Locus tag: PFL_0975
Name: PF07130 Funciton: Conserved hypothetical protein |
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PF07130
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Conserved hypothetical protein
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |