# TF - PhhR: Pmen_3111
>Pmen_1696(hpd) Score=4.9 Pos=-144 [Pseudomonas mendocina ymp]
CTGTAAGAAAAACTTGCCAA
>Pmen_1696(hpd) Score=4.7 Pos=-195 [Pseudomonas mendocina ymp]
CTGGCAAGAAAACCTTACGC
>Pmen_3112(phhA) Score=5.2 Pos=-193 [Pseudomonas mendocina ymp]
CCGTCAAGAATATGTGACAG
>Pmen_3111(phhR) Score=5.2 Pos=-80 [Pseudomonas mendocina ymp]
CTGTCACATATTCTTGACGG
# TF - HexR: Pmen_3144
>Pmen_1312(edd) Score=6.5 Pos=-50 [Pseudomonas mendocina ymp]
ATtTTGT------ACAAaca
>Pmen_3143(zwf) Score=8.1 Pos=-85 [Pseudomonas mendocina ymp]
ATGTTGT------ACAACAT
>Pmen_1147(glk) Score=7.7 Pos=-193 [Pseudomonas mendocina ymp]
TTGTTGT------ACAACAA
>Pmen_1312(edd) Score=7.5 Pos=-111 [Pseudomonas mendocina ymp]
TTGTTGT------ACAAGAT
>Pmen_3144(hexR) Score=8.1 Pos=-138 [Pseudomonas mendocina ymp]
ATGTTGT------ACAACAT
>Pmen_1311(gapA) Score=6.3 Pos=-97 [Pseudomonas mendocina ymp]
TTGTATT------ACAAAAT
>Pmen_1311(gapA) Score=7.5 Pos=-38 [Pseudomonas mendocina ymp]
ATCTTGT------ACAACAA
# TF - DesT: Pmen_0667
>Pmen_2469(fabA) Score=5.5 Pos=-144 [Pseudomonas mendocina ymp]
AGAGTACAACTGTACTCA
>Pmen_2584(plsC) Score=5.2 Pos=-47 [Pseudomonas mendocina ymp]
AGTGAACGCCCGTACACT
>Pmen_0668(desC) Score=5.9 Pos=-71 [Pseudomonas mendocina ymp]
AGTGAACAACTGTTGACT
>Pmen_0668(desC) Score=5.3 Pos=-29 [Pseudomonas mendocina ymp]
TGTGCACAAGTGTTCACT
# TF - HexR1: Pmen_4485
>Pmen_0576(aceE) Score=6.3 Pos=-128 [Pseudomonas mendocina ymp]
ATGTAGTAAAACTACAA
>Pmen_0576(aceE) Score=5.8 Pos=-181 [Pseudomonas mendocina ymp]
TTGTAGTTTTACTACTA
>Pmen_4485(hexR1) Score=6.3 Pos=-105 [Pseudomonas mendocina ymp]
ATGTAGTATAACTACAA
>Pmen_4486(zwf) Score=6.3 Pos=-131 [Pseudomonas mendocina ymp]
TTGTAGTTATACTACAT
# TF - BirA: Pmen_3926
>Pmen_4089 Score=8.2 Pos=-107 [Pseudomonas mendocina ymp]
CTGTCAACC--------------GGTTGACGA
>Pmen_4088(bioB) Score=8.2 Pos=-119 [Pseudomonas mendocina ymp]
TCGTCAACC--------------GGTTGACAG
# TF - NrtR: Pmen_1413
>Pmen_1413(nrtR) Score=5.3 Pos=-109 [Pseudomonas mendocina ymp]
ATATTTCATCTGATGAAATAT
>Pmen_1412(pncA) Score=5.3 Pos=-52 [Pseudomonas mendocina ymp]
ATATTTCATCAGATGAAATAT
# TF - NrdR: Pmen_3858
>Pmen_3151(nrdA) Score=5.1 Pos=-407 [Pseudomonas mendocina ymp]
CCACCAGATATTGGGT
>Pmen_3151(nrdA) Score=5.1 Pos=-214 [Pseudomonas mendocina ymp]
CCACTATATGTAGTAG
>Pmen_1583(topA) Score=5.7 Pos=-69 [Pseudomonas mendocina ymp]
CCACTATATATAGCGG
# TF - SahR: Pmen_0455
>Pmen_0455(sahR) Score=7.2 Pos=-62 [Pseudomonas mendocina ymp]
ATATCAAAACTTTTTGATAT
# TF - Zur: Pmen_4496
>Pmen_4495(znuA) Score=4.7 Pos=-45 [Pseudomonas mendocina ymp]
GAGACGTTATTATATTACCCGTT
>Pmen_4496(zur) Score=4 Pos=-44 [Pseudomonas mendocina ymp]
AACGGGTAATATAATAACGTCTC
>Pmen_4537(dksA2) Score=5.1 Pos=-44 [Pseudomonas mendocina ymp]
TAAATGTTATGTTATAACAATTG
>Pmen_4538(folE2) Score=5.9 Pos=-50 [Pseudomonas mendocina ymp]
CAATTGTTATAACATAACATTTA
>Pmen_3863(zbp) Score=5.9 Pos=-48 [Pseudomonas mendocina ymp]
AAGTTGTTATAACGTAACGATTC
# TF - LldR: Pmen_3633
>Pmen_3633(lldR) Score=3.9 Pos=-29 [Pseudomonas mendocina ymp]
GTCTGGTCAAACCAATG
>Pmen_3634(lldP) Score=6.4 Pos=-139 [Pseudomonas mendocina ymp]
AATTGGTATTACCAATT
>Pmen_3634(lldP) Score=3.6 Pos=-285 [Pseudomonas mendocina ymp]
CATTGGTTTGACCAGAC
>Pmen_3633(lldR) Score=6.3 Pos=-175 [Pseudomonas mendocina ymp]
AATTGGTAATACCAATT
# TF - NorR: Pmen_3579
>Pmen_3579(norR) Score=4.9 Pos=-55 [Pseudomonas mendocina ymp]
TGTTGTCTTAATGACTCGC
>Pmen_3579(norR) Score=4.6 Pos=-29 [Pseudomonas mendocina ymp]
GTGAGTCATAAAGACTTTG
>Pmen_3579(norR) Score=4.9 Pos=-10 [Pseudomonas mendocina ymp]
AGTAGTCGAAATGACCGCT
>Pmen_3580(hmp) Score=4.9 Pos=-156 [Pseudomonas mendocina ymp]
GCGAGTCATTAAGACAACA
>Pmen_3580(hmp) Score=4.9 Pos=-201 [Pseudomonas mendocina ymp]
AGCGGTCATTTCGACTACT
>Pmen_3580(hmp) Score=4.6 Pos=-182 [Pseudomonas mendocina ymp]
CAAAGTCTTTATGACTCAC
# TF - PrpR: Pmen_2079
>Pmen_2079(prpR) Score=4.8 Pos=-13 [Pseudomonas mendocina ymp]
GGTGTCGACAAT
>Pmen_2079(prpR) Score=5.8 Pos=-87 [Pseudomonas mendocina ymp]
ATTGTCGACAAT
# TF - HutC: Pmen_4068
>Pmen_4074(hutD) Score=4.6 Pos=-212 [Pseudomonas mendocina ymp]
TGTTTTGTATATACAATATG
>Pmen_4074(hutD) Score=4.2 Pos=-27 [Pseudomonas mendocina ymp]
GACCATGTATATACATTTGG
>Pmen_4073(hutI) Score=3.8 Pos=-220 [Pseudomonas mendocina ymp]
CCAAATGTATATACATGGTC
>Pmen_4073(hutI) Score=4.4 Pos=-35 [Pseudomonas mendocina ymp]
CATATTGTATATACAAAACA
# TF - IscR: Pmen_3512
>Pmen_3930(erpA) Score=7.3 Pos=-77 [Pseudomonas mendocina ymp]
ATAGTTGACCAATTTTCTCGGGCAA
>Pmen_3512(iscR) Score=7 Pos=-64 [Pseudomonas mendocina ymp]
ATAGTTGACTTAAATACTCGGGAAT
# TF - GlcC: Pmen_0204
>Pmen_0203(glcD) Score=6 Pos=-115 [Pseudomonas mendocina ymp]
AACTGGTCATACCAGCA
>Pmen_0203(glcD) Score=6.1 Pos=-224 [Pseudomonas mendocina ymp]
AACTGGTCGTACCAGTT
>Pmen_0204(glcC) Score=4.7 Pos=-141 [Pseudomonas mendocina ymp]
TGCTGGTATGACCAGTT
>Pmen_0204(glcC) Score=5.8 Pos=-32 [Pseudomonas mendocina ymp]
AACTGGTACGACCAGTT
# TF - NtrC: Pmen_4144
>Pmen_2597(ybdK) Score=5.2 Pos=-120 [Pseudomonas mendocina ymp]
CGCACCGAGATGGTGCG
>Pmen_4140(glnA) Score=4.4 Pos=-202 [Pseudomonas mendocina ymp]
AGCCCTTAAATGGTGCA
>Pmen_4143(ntrB) Score=5.6 Pos=-256 [Pseudomonas mendocina ymp]
CGCACCTTTATGGTGCA
>Pmen_0259(glnK) Score=5 Pos=-341 [Pseudomonas mendocina ymp]
TGCACAATTTTTGAGCA
>Pmen_4140(glnA) Score=4.1 Pos=-233 [Pseudomonas mendocina ymp]
CGCACCAAAATAGGTCT
>Pmen_0259(glnK) Score=5.6 Pos=-308 [Pseudomonas mendocina ymp]
CGCACCAAATTTGTGCG
# TF - FruR: Pmen_0785
>Pmen_0785(fruR) Score=5.1 Pos=-119 [Pseudomonas mendocina ymp]
GCTGAAACGATTCATC
>Pmen_0786(fruB) Score=5 Pos=-121 [Pseudomonas mendocina ymp]
GATGAATCGTTTCAGC
# TF - ModE: Pmen_4091
>Pmen_4339(modA) Score=6 Pos=-74 [Pseudomonas mendocina ymp]
CGCTATATACAAGAAAACATAACG
# TF - LexA: Pmen_1587
>Pmen_3626(recN) Score=5.9 Pos=-40 [Pseudomonas mendocina ymp]
ACTGTATAAATAACCAGA
>Pmen_1587(lexA) Score=5.5 Pos=-45 [Pseudomonas mendocina ymp]
ACTGTATATAATCCCAGT
>Pmen_1587(lexA) Score=5.7 Pos=-26 [Pseudomonas mendocina ymp]
ACTGTATAAAAAGACAGA
>Pmen_1936(imuA) Score=5.7 Pos=-37 [Pseudomonas mendocina ymp]
ACTGTATGCATAGACAGT
>Pmen_3241(PF07130) Score=5.5 Pos=-57 [Pseudomonas mendocina ymp]
ACTGTACAAACAACCAGT
>Pmen_1270(ruvC) Score=5.6 Pos=-25 [Pseudomonas mendocina ymp]
ACTGGATAAATAGACAGT
>Pmen_3015(recA) Score=5.2 Pos=-61 [Pseudomonas mendocina ymp]
ACTGGCTACTTATACAGT
>Pmen_2106(PA0922) Score=5.2 Pos=-75 [Pseudomonas mendocina ymp]
ACTGTTTATTTGTACAGT
>Pmen_1427(dinG) Score=5.2 Pos=-37 [Pseudomonas mendocina ymp]
ACTGAAAATTTATCCAGC
>Pmen_3241(yebG) Score=5.5 Pos=-57 [Pseudomonas mendocina ymp]
ACTGTACAAACAACCAGT
>Pmen_4466(PF04055) Score=5.5 Pos=-34 [Pseudomonas mendocina ymp]
ACTGTTCATATATACAGT
>Pmen_4146(PSEEN2356) Score=6 Pos=-34 [Pseudomonas mendocina ymp]
ACTGTATAAAAAAACAGT
>Pmen_4110(PF08774) Score=5.6 Pos=-21 [Pseudomonas mendocina ymp]
TCTGTATAAAAAACCAGT
# TF - LiuR: Pmen_2034
>Pmen_2034(liuR) Score=5.5 Pos=-23 [Pseudomonas mendocina ymp]
GTTAACGTAAAGGTAAAC
>Pmen_2034(liuR) Score=6.5 Pos=-29 [Pseudomonas mendocina ymp]
GTTTACGTTAACGTAAAG
# TF - PsrA: Pmen_1588
>Pmen_1588(psrA) Score=5 Pos=-44 [Pseudomonas mendocina ymp]
GCTGAAACGTATGTTTCAAA
>Pmen_1588(psrA) Score=5.8 Pos=-31 [Pseudomonas mendocina ymp]
TTTCAAACAAGTGTTTGTCA
>Pmen_1580(fadB) Score=5.7 Pos=-178 [Pseudomonas mendocina ymp]
AATCAAACGGGCGTATGAAT
>Pmen_2707(etfB) Score=5.6 Pos=-221 [Pseudomonas mendocina ymp]
ATACAAACGTTTGTTTGAAT
>Pmen_2708(etfD) Score=5.9 Pos=-123 [Pseudomonas mendocina ymp]
ATTCAAACAAACGTTTGTAT
>Pmen_3020(rpoS) Score=4.8 Pos=-424 [Pseudomonas mendocina ymp]
CCTCAAACGGTAGTTTGAAT
>Pmen_0285(algQ) Score=5.2 Pos=-269 [Pseudomonas mendocina ymp]
GATTAAACGCTCGTATGAAA
>Pmen_4081(acdH1) Score=5.9 Pos=-125 [Pseudomonas mendocina ymp]
TTTCAAACGCCTGTTTGATT
>Pmen_2531 Score=5.7 Pos=-89 [Pseudomonas mendocina ymp]
ATTCAAACAAGCGTATGTTT
# TF - RutR: Pmen_3699
>Pmen_2756(pbuT3) Score=4.8 Pos=-123 [Pseudomonas mendocina ymp]
TCTTGACCGCTCGGTCAACA
>Pmen_2758(COG0726) Score=5.8 Pos=-166 [Pseudomonas mendocina ymp]
TGCTGACCACTCAGGCAATT
>Pmen_3697(tsx3) Score=5.4 Pos=-92 [Pseudomonas mendocina ymp]
AGCTGATCAGTTGGACAGCT
>Pmen_3697(tsx3) Score=5.7 Pos=-54 [Pseudomonas mendocina ymp]
ACCTGACCACACGGCCAGGA
>Pmen_4444(pbuT4) Score=5.6 Pos=-36 [Pseudomonas mendocina ymp]
GCCTGACCAATCGGACAACA
>Pmen_2762(pbuT2) Score=5.5 Pos=-100 [Pseudomonas mendocina ymp]
TTCTGACCGACCAGACAGCT
# TF - PhnF: Pmen_2887
>Pmen_2887(phnF) Score=5.2 Pos=24 [Pseudomonas mendocina ymp]
TTGTCTAGACAA
# TF - PhnR: Pmen_1333
>Pmen_1333(phnR) Score=4.7 Pos=-289 [Pseudomonas mendocina ymp]
TGGTCTAGATCA
>Pmen_1333(phnR) Score=5.3 Pos=-27 [Pseudomonas mendocina ymp]
TGGACTAGTCCA
>Pmen_1332(phnS) Score=5.3 Pos=-300 [Pseudomonas mendocina ymp]
TGGACTAGTCCA
>Pmen_1332(phnS) Score=5.4 Pos=-38 [Pseudomonas mendocina ymp]
TGATCTAGACCA
>Pmen_1925(phnX) Score=4.8 Pos=-29 [Pseudomonas mendocina ymp]
TGGACTAGGCCA
# TF - FabR2: Pmen_2619
>Pmen_2620(COG2072) Score=5.4 Pos=-68 [Pseudomonas mendocina ymp]
AGTATACACATGTCTACC
>Pmen_2620(COG2072) Score=5.3 Pos=-48 [Pseudomonas mendocina ymp]
GGTATACAGATGTAGACA
>Pmen_2619(fabR2) Score=5.4 Pos=-66 [Pseudomonas mendocina ymp]
GGTAGACATGTGTATACT
>Pmen_2619(fabR2) Score=5.3 Pos=-86 [Pseudomonas mendocina ymp]
TGTCTACATCTGTATACC
# TF - RutR3: Pmen_2767
>Pmen_2751(xdhA) Score=5.9 Pos=-123 [Pseudomonas mendocina ymp]
TGTTGACCCAAAAGTCAGAA
>Pmen_2751(xdhA) Score=4.6 Pos=-146 [Pseudomonas mendocina ymp]
AGCTGACCACAGGGTCAAAT
>Pmen_2756(pbuT) Score=4.5 Pos=-123 [Pseudomonas mendocina ymp]
TCTTGACCGCTCGGTCAACA
>Pmen_2767(rutR3) Score=5.2 Pos=-119 [Pseudomonas mendocina ymp]
ATTTGACTCAAGAGTCAGAT
# RNA - yybP-ykoY
>Pmen_3666(COG2119) Score=36.5 Pos=-207 [Pseudomonas mendocina ymp]
CGCCCGTCCTAGGGGAGTAGTCTCCCGCGAGCGCCCTGCTCGCCCGGCACGCGTCAACACACTTGCTCCGCAGAGCATGGCGCGTGCGACCCAAGGCCTTCATAGACAGGCCTGCGGTTTGACAAGACCTATGACACGCACAC
# RNA - TPP
>Pmen_0609(thiC) Score=81.3 Pos=-202 [Pseudomonas mendocina ymp]
TAAGTTCTTGTCGGGGTGCCCCATATGCGGGGCTGAGATTGGCAGCTGCCGGATCCCGTTGAACCTGATCAGGTTAAGGCCTGCGTAGGGAACAAGATGTCCTCGCCA
# RNA - SAH_riboswitch
>Pmen_0449(ahcY) Score=57.3 Pos=-115 [Pseudomonas mendocina ymp]
CCCGTCCGAGGGGCGCTGCAGCAGGTCGGTCGACACCGGTTTGTCAGGCTCGGATGGGGCGTTAACCATACGCATCAACGGCGCCCATTCGCA
# RNA - mini-ykkC
>Pmen_1358(ucaA) Score=40.2 Pos=-73 [Pseudomonas mendocina ymp]
TCACCACGGACGACCGTGGCACATGACGAATGACGGCGGGACGGCCCGC
# RNA - ykkC-yxkD
>Pmen_1365(uctP) Score=90.3 Pos=-287 [Pseudomonas mendocina ymp]
GCCAATAGCCGGCTAGGGTTCCGGCTCGCCACCCGCGAGCGACTGGTCCGAGAGCTGGCGACCTCCAGCGAGGTTACACGGCGGGACAAAAGCCCGGGAGAA
>Pmen_1366(uctB1) Score=76.2 Pos=-172 [Pseudomonas mendocina ymp]
AGAAATGGCCGACTAGGGTTCCGGCCCACCCGCACGGGTGGGTGACTGGTCCGAGAGTGGGCGACCTCGGAGCGGCGGGAAGCCGCGGGGTTACACGGCGGGATAAAAGCCCGGGAGAA
>Pmen_1361(uctB1) Score=95.4 Pos=-168 [Pseudomonas mendocina ymp]
CGAAATGGATGACTAGGGTTCCGATCCGCGCAGGCGGGTGACTGGTCCGAGAGTCATCGACCTCCAGTGAGGTTACACGGCGGGATAAAAGCCCGGGAGAA
# RNA - S15
>Pmen_3605(rpsO) Score=50.6 Pos=-41 [Pseudomonas mendocina ymp]
TTGAGACTGCTGCGGCAGTTTCCAGATGAGAGGAAGCCAACATGGCACTCAGCGTTGAAGAAAAAGCCCAGATCGTAAACGAGTACAAGCAAGCTGAA
# RNA - Cobalamin
>Pmen_4567(btuB) Score=118.9 Pos=-394 [Pseudomonas mendocina ymp]
TCATATCCGCCCCGCTTCAGGTGTCTCACGCCGCCGCGCGTGAGGTGAAACGGGAAGTCGGTTGAAGTCCGACGCTGCCCCCGCAACGGTAAGCGAGCGACCGCATCGATACGCCACTGTGCGCCACGCGCATGGGAAGGCGATGCGTTCATGACCCTCGCAAGCCCGGAGACCGGCCTGGAGTCATTTGTCTGGC
>Pmen_4571(cobG) Score=99.8 Pos=-184 [Pseudomonas mendocina ymp]
GCCTTCGCGGGAGTGACGGTAAATGGCCATTTCAGAAATTCCCCAAGAGGGAACACGGTCAAGCCGTGGCTGCCCCCGCAACTGTAAACAGCGAGTCCAATGCAATCGGCCACTGGGTAACCGGGAAGGCGCGGCGGACGAAGACCTGTCAGCCAGGAGACCTGCCGACGAACGCTGGTCGCGAGT
>Pmen_3752(cbtC) Score=125.1 Pos=-258 [Pseudomonas mendocina ymp]
GAGTAAGGTTGCCGCCGATGGTTCCGCCGCCTCTGGCGCGCGGATGAAAAGGGAACAGGGTGCGGCGCCGCGTCGCCAATGCCCTGGCTGCCCCCGCAACTGTAAACGGCGTACGACGCTCCCTATGCCACTGGCCGCCAGGCCGGGAAGGCGAGCGAAGTGGCAAGCCGTGAGCCAGGAGACCTGCCATCGGCAAACGGGCGTTT
>Pmen_3845(btuB1) Score=82.6 Pos=-290 [Pseudomonas mendocina ymp]
CATTCATGTTCCGCCAGGGTGCGCTGCTGACGCGGCGTGAAACGGGAAGTCGGTGCGCCCATCCAGGCAATCCCGACGCTGCCCCCGCAACGGTAATCGACGGCAGGCCACAGCCTGCACCTTGTCCACGGCCACTGGGTATTCCCGGGAAGGCGGACCGGGGTCGTGAGCCCGGAGACCGGCCCCGGCGGTGCGACTGGTGTT
>Pmen_1750(btuR) Score=97.3 Pos=-394 [Pseudomonas mendocina ymp]
CTGCGCGCCTTGCTTCAGGTGCCCCGCGTCGTCTCCATCGACGGCGCCGGGGTGAAACAGGGAAGCCGGTTCCAATGCCGGCGCTGCCCCCGCAACGGTAGGTGAGTCAAACGCTGTTTCAGGCCACTGTGCAATGCACGGGAAGGCGCAGCGTCGAACCTTTCAGGTTCGCTCACGAGCCCGGAGACCGGCCTGTCGCAGTTCCACGGCATC
>Pmen_4587 Score=113.1 Pos=-291 [Pseudomonas mendocina ymp]
GTAGCCTTCTCGCTTTCGAGGTTCTTCCCGGCAAGCCGCCGGGGAGCTAAGAGGGAACAGGGTCGATGCCCTGGCTGCCCCCGCAACTGTAAACGGTCGCAACTCCTTCGATACACCACTGCCTCAAGCGGGAAGGTGAAGGACGCACAGCGTGCAGACCGTGAGCCAGGAGACCTGCCTCGATAGACCAGCCACTT
# RNA - FMN
>Pmen_3856(ribE2) Score=102 Pos=-282 [Pseudomonas mendocina ymp]
GCAACGTTCTCAGGGCGGGGTGAGATTCCCCACCGGCGGTAATGGTTCGCAGAACCTAGCCCGCGAGCGCTCGCCATGGCTTCTGCCAGGCGAGGTCCAGCAGACCCGGTGCGATTCCGGGGCCGACGGTATAGTCCGGATAAAGAGAGAGCGGGA
# TF - SdaR: Pmen_1437
>Pmen_1438(grtP) Score=5.7 Pos=-156 [Pseudomonas mendocina ymp]
GGTTGTGCATGTGCACAGCC
# TF - GntR: Pmen_2566
>Pmen_2569(gntKZ) Score=4.5 Pos=-67 [Pseudomonas mendocina ymp]
TTTGGATAGCGCTAACATCC
# TF - SoxR: Pmen_1341
>Pmen_1341(soxR) Score=6.6 Pos=-35 [Pseudomonas mendocina ymp]
ACCTCAACTTAACTTAAGGT
>Pmen_1342(PF03358) Score=6.6 Pos=-63 [Pseudomonas mendocina ymp]
ACCTTAAGTTAAGTTGAGGT
# TF - CueR: Pmen_0812
>Pmen_2225(copZ) Score=5.7 Pos=-72 [Pseudomonas mendocina ymp]
ACCTTGCCATCGTGTCAAGGT
>Pmen_0821(copA) Score=5.6 Pos=-57 [Pseudomonas mendocina ymp]
ACCTTGCCATGGGGTCAAGGT
>Pmen_0823(copZ) Score=5.7 Pos=-8 [Pseudomonas mendocina ymp]
ACCTTGCCATGGTGGCAAGCT
# TF - CadR-PbrR: Pmen_4226
>Pmen_4225(cadA) Score=6.6 Pos=-57 [Pseudomonas mendocina ymp]
ACCCTATAGTGACTACAGGGT
>Pmen_1174(czcR) Score=6.3 Pos=-115 [Pseudomonas mendocina ymp]
ACCCTGTAGTAACTACAGGGA
# TF - PSPTO1352: Pmen_0702
>Pmen_0704 Score=5.1 Pos=-13 [Pseudomonas mendocina ymp]
ACTTGGATACAAGA
# TF - PA1520: Pmen_2755
>Pmen_2758(PA1517) Score=4.7 Pos=-84 [Pseudomonas mendocina ymp]
TTGTATACAA
>Pmen_0163(PA2938) Score=4 Pos=-78 [Pseudomonas mendocina ymp]
ATGTATACAA
>Pmen_2769(gcl) Score=4.7 Pos=-35 [Pseudomonas mendocina ymp]
TTGTATACAA
>Pmen_2764(Pmen_2764) Score=4.1 Pos=-20 [Pseudomonas mendocina ymp]
CTGTATACAC
>Pmen_2756(PA1519) Score=3.8 Pos=-34 [Pseudomonas mendocina ymp]
CGGTACACAA
>Pmen_2756(PA1519) Score=4.6 Pos=-478 [Pseudomonas mendocina ymp]
TTGTACACAG
>Pmen_2756(PA1519) Score=4.7 Pos=-157 [Pseudomonas mendocina ymp]
TTGTATACAA
>Pmen_2757(PA1518) Score=4.7 Pos=-328 [Pseudomonas mendocina ymp]
TTGTATACAA
>Pmen_2755(PA1520) Score=4.7 Pos=-435 [Pseudomonas mendocina ymp]
TTGTATACAA
>Pmen_0163(PA2938) Score=3.5 Pos=-44 [Pseudomonas mendocina ymp]
GTGTCTACAG
>Pmen_3697(PA0165) Score=4 Pos=-113 [Pseudomonas mendocina ymp]
TTGAACACAA
>Pmen_2762(pbuX) Score=4.8 Pos=-162 [Pseudomonas mendocina ymp]
TTGTGCACAA
>Pmen_2764(Pmen_2764) Score=4 Pos=-109 [Pseudomonas mendocina ymp]
TTGTGTGCAA
>Pmen_2764(Pmen_2764) Score=4.6 Pos=-66 [Pseudomonas mendocina ymp]
CTGTGTACAA
>Pmen_2755(PA1520) Score=4.6 Pos=-114 [Pseudomonas mendocina ymp]
CTGTGTACAA
>Pmen_2757(PA1518) Score=4.8 Pos=-147 [Pseudomonas mendocina ymp]
TTGTGTACAA
>Pmen_2769(gcl) Score=4 Pos=-185 [Pseudomonas mendocina ymp]
TTGTATACAT
>Pmen_2768(PA1503) Score=4.7 Pos=-306 [Pseudomonas mendocina ymp]
TTGTATACAA
>Pmen_2768(PA1503) Score=4 Pos=-156 [Pseudomonas mendocina ymp]
ATGTATACAA
>Pmen_2758(PA1517) Score=4.8 Pos=-265 [Pseudomonas mendocina ymp]
TTGTACACAA
# TF - UreR: Pmen_0307
>Pmen_0306(ureA) Score=4.7 Pos=-277 [Pseudomonas mendocina ymp]
GCCGGTCAGTCCAGT
>Pmen_0306(ureA) Score=5.2 Pos=-138 [Pseudomonas mendocina ymp]
ACTGTTCAGACCAGT
>Pmen_0307(ureR) Score=5.2 Pos=-164 [Pseudomonas mendocina ymp]
ACTGGTCTGAACAGT
>Pmen_0307(ureR) Score=4.7 Pos=-25 [Pseudomonas mendocina ymp]
ACTGGACTGACCGGC
>Pmen_0307(ureR) Score=4.1 Pos=-16 [Pseudomonas mendocina ymp]
ACCGGCCCGAACAGT
>Pmen_0306(ureA) Score=4.1 Pos=-286 [Pseudomonas mendocina ymp]
ACTGTTCGGGCCGGT
# TF - MetR: Pmen_1682
>Pmen_2159(metH) Score=5.2 Pos=-97 [Pseudomonas mendocina ymp]
CATGAATGAAATTCATG
>Pmen_1683(metE) Score=4.9 Pos=-71 [Pseudomonas mendocina ymp]
CTTGAGTTTGTCTCACT
>Pmen_1683(metE) Score=3.8 Pos=-102 [Pseudomonas mendocina ymp]
CATGAGTAAATCTTTAG
>Pmen_1682(metR) Score=4.9 Pos=-115 [Pseudomonas mendocina ymp]
AGTGAGACAAACTCAAG
>Pmen_1682(metR) Score=3.8 Pos=-84 [Pseudomonas mendocina ymp]
CTAAAGATTTACTCATG
# TF - FdsR: Pmen_0386
>Pmen_0387(fdsG) Score=6 Pos=-124 [Pseudomonas mendocina ymp]
ATAAGAACTTTACTTCATAT
>Pmen_0387(fdsG) Score=5.6 Pos=-200 [Pseudomonas mendocina ymp]
ATATGTTCAAGGATTCATAT
>Pmen_0386(fdsR) Score=6 Pos=-94 [Pseudomonas mendocina ymp]
ATATGAAGTAAAGTTCTTAT
>Pmen_0386(fdsR) Score=5.6 Pos=-18 [Pseudomonas mendocina ymp]
ATATGAATCCTTGAACATAT
# TF - PdxQ3: Pmen_1514
>Pmen_1515 Score=13.2 Pos=-81 [Pseudomonas mendocina ymp]
GTTGTATC-(1)-ATGACAAT-(6)-ATTGTCAT
# TF - PA0268: Pmen_1085
>Pmen_1084(PF02627) Score=11.8 Pos=-106 [Pseudomonas mendocina ymp]
ATTGGCCTC-(15)-ATTGGCTAT-(5)-CAGTCCGTA
# TF - YdcR: Pmen_3095
>Pmen_3094(COG0348) Score=9 Pos=-99 [Pseudomonas mendocina ymp]
ATCTGATCCGCTTTT---------ACCTGAGTCTGTTTT
# TF - GcvR: Pmen_1348
>Pmen_1346(gcvH) Score=5.8 Pos=-258 [Pseudomonas mendocina ymp]
CTGTATCGATATCGATCCAC
>Pmen_1346(gcvH) Score=4.7 Pos=-239 [Pseudomonas mendocina ymp]
CCGTAACGATTTAGCAACAA
>Pmen_1346(gcvH) Score=5.7 Pos=-158 [Pseudomonas mendocina ymp]
TCGTATCGATATCGTTCCAG
# TF - YjiR: Pmen_0240
>Pmen_0241(yjiS) Score=16 Pos=-139 [Pseudomonas mendocina ymp]
TACAGAT-(17)-TTCAGAT-(13)-ATCTGTA-(23)-ATCTGTC
# TF - GguR: Pmen_3305
>Pmen_1215(kdgD) Score=5.1 Pos=-275 [Pseudomonas mendocina ymp]
ATGTTGTCGTATGACCT
>Pmen_1215(kdgD) Score=4.7 Pos=-76 [Pseudomonas mendocina ymp]
TTGTTGTACGATAACGT
>Pmen_3299(udh) Score=4.8 Pos=-316 [Pseudomonas mendocina ymp]
ACGTTGTCATACAACTT
>Pmen_3299(udh) Score=5 Pos=-60 [Pseudomonas mendocina ymp]
AAGTCATACGACAACGT
>Pmen_3306(aldE) Score=4.8 Pos=-54 [Pseudomonas mendocina ymp]
CAGTTGTACGATGACAC
>Pmen_3305(gguR) Score=4.8 Pos=-63 [Pseudomonas mendocina ymp]
GTGTCATCGTACAACTG
>Pmen_1214(gudD2) Score=4.7 Pos=-450 [Pseudomonas mendocina ymp]
ACGTTATCGTACAACAA
>Pmen_1214(gudD2) Score=5.1 Pos=-251 [Pseudomonas mendocina ymp]
AGGTCATACGACAACAT
# TF - PhrR: Pmen_1072
>Pmen_1073(COG3272) Score=5.2 Pos=-42 [Pseudomonas mendocina ymp]
TGTACATGCACCAACATATGTACA
>Pmen_1076(COG1090) Score=6.1 Pos=-131 [Pseudomonas mendocina ymp]
TATACAAGAATGTTTTCATGTACA
>Pmen_1075(COG3380) Score=5.9 Pos=-75 [Pseudomonas mendocina ymp]
TGTACATGAAAACATTCTTGTATA
>Pmen_3288(folM) Score=5.6 Pos=-251 [Pseudomonas mendocina ymp]
TGTACAAAACACATGGATCGTACA
>Pmen_3288(folM) Score=4.6 Pos=-118 [Pseudomonas mendocina ymp]
TGTACAACCCGCAGCTCTGGTATA
>Pmen_1353(mcp1) Score=5.6 Pos=-94 [Pseudomonas mendocina ymp]
TATACAAACAGGAATTCATGTACA
>Pmen_1073(COG3272) Score=6.4 Pos=-92 [Pseudomonas mendocina ymp]
TGTACAAATCATTTGACTTGTACA
# TF - PdxW2: Pmen_0130
>Pmen_0131(pdxO2) Score=13.2 Pos=-88 [Pseudomonas mendocina ymp]
ATTGGCTCT-(15)-AATGGATCT-(5)-CAGGCCAAT