Regulon of NtrC in Pseudomonas mendocina ymp

Properties
Regulator type:	Transcription factor
TF locus tag:	Pmen_4144
Regulator family:	Fis
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Regulog:	NtrC - Pseudomonadaceae
Statistics of regulated genes:
- Genes	7
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 49 sites [see more]

Member of regulog collections

By taxonomy - Pseudomonadaceae
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -256 Score: 5.6 Sequence: CGCACCTTTATGGTGCA Locus tag: Pmen_4143 Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-) Locus tag: Pmen_4144 Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family
	Pmen_4143	ntrB	Nitrogen regulation protein NR(II) (EC 2.7.3.-)
	Pmen_4144	ntrC	Nitrogen regulation protein NR(I), Fis family
Position: -120 Score: 5.2 Sequence: CGCACCGAGATGGTGCG Locus tag: Pmen_2597 Name: ybdK Funciton: Carboxylate-amine ligase Locus tag: Pmen_2596 Name: PF04168 Funciton: Conserved hypothetical protein Locus tag: Pmen_2595 Name: PF01841 Funciton: Transglutaminase-like protein
	Pmen_2597	ybdK	Carboxylate-amine ligase
	Pmen_2596	PF04168	Conserved hypothetical protein
	Pmen_2595	PF01841	Transglutaminase-like protein
Position: -341 Score: 5 Sequence: TGCACAATTTTTGAGCA Position: -308 Score: 5.6 Sequence: CGCACCAAATTTGTGCG Locus tag: Pmen_0259 Name: glnK Funciton: Nitrogen regulatory protein P-II
	Pmen_0259	glnK	Nitrogen regulatory protein P-II
Position: -233 Score: 4.1 Sequence: CGCACCAAAATAGGTCT Position: -202 Score: 4.4 Sequence: AGCCCTTAAATGGTGCA Locus tag: Pmen_4140 Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2)
	Pmen_4140	glnA	Glutamine synthetase type I (EC 6.3.1.2)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD