Regulon of NtrC in Pseudomonas mendocina ymp
| Regulator type: | Transcription factor |
| TF locus tag: | Pmen_4144 |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Regulog: | NtrC - Pseudomonadaceae |
| Statistics of regulated genes: | |
| - Genes | 7 |
| - Operons | 4 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -256
Score: 5.6 Sequence: CGCACCTTTATGGTGCA
Locus tag: Pmen_4143
Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: Pmen_4144
Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family |
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ntrB
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Nitrogen regulation protein NR(II) (EC 2.7.3.-)
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ntrC
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Nitrogen regulation protein NR(I), Fis family
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Position: -120
Score: 5.2 Sequence: CGCACCGAGATGGTGCG
Locus tag: Pmen_2597
Name: ybdK Funciton: Carboxylate-amine ligase
Locus tag: Pmen_2596
Name: PF04168 Funciton: Conserved hypothetical protein
Locus tag: Pmen_2595
Name: PF01841 Funciton: Transglutaminase-like protein |
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ybdK
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Carboxylate-amine ligase
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PF04168
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Conserved hypothetical protein
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PF01841
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Transglutaminase-like protein
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Position: -341
Score: 5 Sequence: TGCACAATTTTTGAGCA
Position: -308
Score: 5.6 Sequence: CGCACCAAATTTGTGCG
Locus tag: Pmen_0259
Name: glnK Funciton: Nitrogen regulatory protein P-II |
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glnK
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Nitrogen regulatory protein P-II
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Position: -233
Score: 4.1 Sequence: CGCACCAAAATAGGTCT
Position: -202
Score: 4.4 Sequence: AGCCCTTAAATGGTGCA
Locus tag: Pmen_4140
Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2) |
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glnA
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Glutamine synthetase type I (EC 6.3.1.2)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |