Profile of regulator NtrC in Pseudomonadaceae
Properties
| Regulator family: |
Fis |
| Regulation mode: |
activator (repressor) |
| Biological process: |
Nitrogen assimilation |
| Effector: |
Phosphorylated NtrB, signal histidine kinase |
| Regulog: |
NtrC - Pseudomonadaceae |
Member of regulog collections
Transcription factor binding sites
|
Locus Tag |
Name |
Position |
Score |
Sequence |
|
Pseudomonas aeruginosa PAO1
|
|
PA1730 |
ybdK |
-118 |
4.5 |
TGCACCAGACTGGGGCG |
|
PA5124 |
ntrB |
-182 |
5.4 |
CGCACCAGATTGGTGCG |
|
PA5288 |
glnK |
-338 |
5.2 |
TGCGCCTATTTGGTGCG |
|
PA5119 |
glnA |
-207 |
5.3 |
AGCACCATAACGGTGCA |
|
PA5119 |
glnA |
-220 |
5.1 |
TGCACCAACATGGAGCA |
|
Pseudomonas entomophila L48
|
|
PSEEN0571 |
alsT |
-133 |
5.5 |
CGCACCAAAATGGAGCA |
|
PSEEN3762 |
amtB2 |
-69 |
4.7 |
GGCACCGATTCGGTGCA |
|
PSEEN0390 |
glnA |
-236 |
5.8 |
CGCACCAATATGGTGCA |
|
PSEEN0387 |
ntrB |
-71 |
4.4 |
AGCACGTTATCCGTGCG |
|
PSEEN0387 |
ntrB |
-245 |
5.5 |
TGCTCCATATTGGTGCA |
|
PSEEN5376 |
glnK |
-310 |
5.3 |
CGCACCGATTTTGTGCG |
|
Pseudomonas putida KT2440
|
|
PP2106 |
amtB2 |
-72 |
4.7 |
GGCACCGATTCGGTGCA |
|
PP2688 |
ybdK |
-256 |
4.1 |
CGCCCTTTTTTGATGCG |
|
PP2688 |
ybdK |
-295 |
4.5 |
CGCCCCATTTCGGTTCA |
|
PP5046 |
glnA |
-205 |
4.4 |
CGCATCGTAAGGGTGCA |
|
PP5046 |
glnA |
-236 |
5.3 |
CGCACCCTATTGGTGCG |
|
PP5047 |
ntrB |
-257 |
4.7 |
TGCTCTATCTTGGTGCA |
|
PP5234 |
glnK |
-299 |
4.6 |
TGCACATTTTTCGCGCA |
|
PP5234 |
glnK |
-266 |
5.4 |
CGCACCGAAATTGTGCA |
|
Pseudomonas syringae pv. tomato str. DC3000
|
|
PSPTO5500 |
alsT |
-47 |
4.8 |
TGCACCGGTATAGTGCG |
|
PSPTO2059 |
ybdK |
-119 |
5 |
TGCACAGGAATGGTGCG |
|
PSPTO0359 |
glnA |
-208 |
4.9 |
AGCGCCATAACGGTGCG |
|
PSPTO0353 |
ntrB |
-50 |
4.2 |
AGCACCAGCATTGCGCG |
|
PSPTO0353 |
ntrB |
-267 |
5.3 |
AGCACCTTTTTGGTGCA |
|
PSPTO0217 |
glnK |
-315 |
4.9 |
AGCACCATTGTTGTGCA |
|
PSPTO0217 |
glnK |
-348 |
4.6 |
TGCACGCTTATGGCGCG |
|
Pseudomonas fluorescens Pf-5
|
|
PFL_6139 |
alsT |
-210 |
4.8 |
CGCACCGGTATAGTGCG |
|
PFL_4230 |
amtB2 |
-54 |
4.6 |
CGCGCCAAAACGGTTCA |
|
PFL_2518 |
ybdK |
-283 |
4.5 |
TGCACCGATTCTGTTCG |
|
PFL_0386 |
glnA |
-235 |
4.5 |
TGCACCAAAACGGGTCA |
|
PFL_0378 |
ntrB |
-246 |
5.4 |
TGCACTATATTGGTGCA |
|
PFL_6020 |
glnK |
-347 |
4.5 |
TGCACGTTTTTCGCGCA |
|
PFL_6020 |
glnK |
-314 |
5.3 |
CGCACCGTTTTTGTGCG |
|
Pseudomonas mendocina ymp
|
|
Pmen_2597 |
ybdK |
-120 |
5.2 |
CGCACCGAGATGGTGCG |
|
Pmen_4140 |
glnA |
-202 |
4.4 |
AGCCCTTAAATGGTGCA |
|
Pmen_4143 |
ntrB |
-256 |
5.6 |
CGCACCTTTATGGTGCA |
|
Pmen_0259 |
glnK |
-341 |
5 |
TGCACAATTTTTGAGCA |
|
Pmen_4140 |
glnA |
-233 |
4.1 |
CGCACCAAAATAGGTCT |
|
Pmen_0259 |
glnK |
-308 |
5.6 |
CGCACCAAATTTGTGCG |
|
Pseudomonas stutzeri A1501
|
|
PST_0353 |
glnA |
-212 |
4.9 |
CGCACCATTAACGCGCA |
|
PST_0350 |
ntrB |
1 |
5.2 |
TGCACCTGTTTGGTGCG |
|
PST_0502 |
glnK |
-329 |
4.8 |
TGCACAAAAAATGAGCA |
|
PST_0502 |
glnK |
-296 |
5.5 |
CGCACCATTTTCGTGCG |
|
PST_0353 |
glnA |
-243 |
4.6 |
CGCACCAAAACAATGCG |
|
Azotobacter vinelandii AvOP
|
|
Avin_37690 |
ybdK |
-298 |
4.6 |
TGCATTTTTTTGGTGCG |
|
Avin_45850 |
glnA |
-100 |
4.1 |
TGCTCCCTTGTGGCGCG |
|
Avin_45850 |
glnA |
-232 |
4.1 |
CGCACCAAAATGAAACA |
|
Avin_45890 |
ntrB |
-179 |
4.2 |
CGCCCTGTTTTGGGGCG |
|
Avin_47790 |
glnK |
-296 |
4.9 |
CGCACGGTTTTCGTGCG |
Export
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Regulatory Sites
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[ FASTA format ]
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