Regulog NtrC - Pseudomonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	Fis
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 49 sites [see more]

Member of regulog collections

By taxonomy - Pseudomonadaceae
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Statistics of regulated genes
Genome	Genes	Operons
Pseudomonas aeruginosa PAO1	8	4
Pseudomonas entomophila L48	8	5
Pseudomonas putida KT2440	9	5
Pseudomonas syringae pv. tomato str. DC3000	10	5
Pseudomonas fluorescens Pf-5	11	6
Pseudomonas mendocina ymp	7	4
Pseudomonas stutzeri A1501	5	3
Azotobacter vinelandii AvOP	7	4

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
ntrB	* Pseudomonas aeruginosa PAO1 Site: position = -182 score = 5.42312 sequence = CGCACCAGATTGGTGCG Gene: PA5124: Nitrogen regulation protein NR(II) (EC 2.7.3.-)	* Pseudomonas entomophila L48 Site: position = -71 score = 4.39086 sequence = AGCACGTTATCCGTGCG Site: position = -245 score = 5.47615 sequence = TGCTCCATATTGGTGCA Gene: PSEEN0387: Nitrogen regulation protein NR(II) (EC 2.7.3.-)	* Pseudomonas putida KT2440 Site: position = -257 score = 4.67952 sequence = TGCTCTATCTTGGTGCA Gene: PP5047: Nitrogen regulation protein NR(II) (EC 2.7.3.-)	* Pseudomonas syringae pv. tomato str. DC3000 Site: position = -50 score = 4.16659 sequence = AGCACCAGCATTGCGCG Site: position = -267 score = 5.31449 sequence = AGCACCTTTTTGGTGCA Gene: PSPTO0353: Nitrogen regulation protein NR(II) (EC 2.7.3.-)	* Pseudomonas fluorescens Pf-5 Site: position = -246 score = 5.43549 sequence = TGCACTATATTGGTGCA Gene: PFL_0378: Nitrogen regulation protein NR(II) (EC 2.7.3.-)	* Pseudomonas mendocina ymp Site: position = -256 score = 5.5799 sequence = CGCACCTTTATGGTGCA Gene: Pmen_4143: Nitrogen regulation protein NR(II) (EC 2.7.3.-)	* Pseudomonas stutzeri A1501 Site: position = 1 score = 5.17203 sequence = TGCACCTGTTTGGTGCG Gene: PST_0350: Nitrogen regulation protein NR(II) (EC 2.7.3.-)	* Azotobacter vinelandii AvOP Site: position = -179 score = 4.18101 sequence = CGCCCTGTTTTGGGGCG Gene: Avin_45890: Nitrogen regulation protein NR(II) (EC 2.7.3.-)	Nitrogen regulation protein NR(II) (EC 2.7.3.-)
ntrC	Pseudomonas aeruginosa PAO1 Gene: PA5125: Nitrogen regulation protein NR(I), Fis family	Pseudomonas entomophila L48 Gene: PSEEN0386: Nitrogen regulation protein NR(I), Fis family	Pseudomonas putida KT2440 Gene: PP5048: Nitrogen regulation protein NR(I), Fis family	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO0352: Nitrogen regulation protein NR(I), Fis family	Pseudomonas fluorescens Pf-5 Gene: PFL_0377: Nitrogen regulation protein NR(I), Fis family	Pseudomonas mendocina ymp Gene: Pmen_4144: Nitrogen regulation protein NR(I), Fis family	Pseudomonas stutzeri A1501 Gene: PST_0349: Nitrogen regulation protein NR(I), Fis family	Azotobacter vinelandii AvOP Gene: Avin_45900: Nitrogen regulation protein NR(I), Fis family	Nitrogen regulation protein NR(I), Fis family

CRON 2.
glnK	* Pseudomonas aeruginosa PAO1 Site: position = -338 score = 5.16879 sequence = TGCGCCTATTTGGTGCG Gene: PA5288: Nitrogen regulatory protein P-II	* Pseudomonas entomophila L48 Site: position = -310 score = 5.34149 sequence = CGCACCGATTTTGTGCG Gene: PSEEN5376: Nitrogen regulatory protein P-II	* Pseudomonas putida KT2440 Site: position = -299 score = 4.63899 sequence = TGCACATTTTTCGCGCA Site: position = -266 score = 5.35645 sequence = CGCACCGAAATTGTGCA Gene: PP5234: Nitrogen regulatory protein P-II	* Pseudomonas syringae pv. tomato str. DC3000 Site: position = -315 score = 4.89031 sequence = AGCACCATTGTTGTGCA Site: position = -348 score = 4.57855 sequence = TGCACGCTTATGGCGCG Gene: PSPTO0217: Nitrogen regulatory protein P-II	* Pseudomonas fluorescens Pf-5 Site: position = -347 score = 4.52647 sequence = TGCACGTTTTTCGCGCA Site: position = -314 score = 5.34882 sequence = CGCACCGTTTTTGTGCG Gene: PFL_6020: Nitrogen regulatory protein P-II	* Pseudomonas mendocina ymp Site: position = -341 score = 5.04392 sequence = TGCACAATTTTTGAGCA Site: position = -308 score = 5.6002 sequence = CGCACCAAATTTGTGCG Gene: Pmen_0259: Nitrogen regulatory protein P-II	* Pseudomonas stutzeri A1501 Site: position = -329 score = 4.78521 sequence = TGCACAAAAAATGAGCA Site: position = -296 score = 5.49501 sequence = CGCACCATTTTCGTGCG Gene: PST_0502: Nitrogen regulatory protein P-II	* Azotobacter vinelandii AvOP Site: position = -296 score = 4.90766 sequence = CGCACGGTTTTCGTGCG Gene: Avin_47790: Nitrogen regulatory protein P-II	Nitrogen regulatory protein P-II
amtB	Pseudomonas aeruginosa PAO1 Gene: PA5287: Ammonium transporter	Pseudomonas entomophila L48 Gene: PSEEN5375: Ammonium transporter	Pseudomonas putida KT2440 Gene: PP5233: Ammonium transporter	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO0218: Ammonium transporter	Pseudomonas fluorescens Pf-5 Gene: PFL_6019: Ammonium transporter	Pseudomonas mendocina ymp	Pseudomonas stutzeri A1501 Gene: PST_0503: Ammonium transporter	Azotobacter vinelandii AvOP Gene: Avin_47780: Ammonium transporter	Ammonium transporter

CRON 3.
glnA	* Pseudomonas aeruginosa PAO1 Site: position = -207 score = 5.32182 sequence = AGCACCATAACGGTGCA Site: position = -220 score = 5.08295 sequence = TGCACCAACATGGAGCA Gene: PA5119: Glutamine synthetase type I (EC 6.3.1.2)	* Pseudomonas entomophila L48 Site: position = -236 score = 5.83128 sequence = CGCACCAATATGGTGCA Gene: PSEEN0390: Glutamine synthetase type I (EC 6.3.1.2)	* Pseudomonas putida KT2440 Site: position = -205 score = 4.44112 sequence = CGCATCGTAAGGGTGCA Site: position = -236 score = 5.28868 sequence = CGCACCCTATTGGTGCG Gene: PP5046: Glutamine synthetase type I (EC 6.3.1.2)	* Pseudomonas syringae pv. tomato str. DC3000 Site: position = -208 score = 4.91774 sequence = AGCGCCATAACGGTGCG Gene: PSPTO0359: Glutamine synthetase type I (EC 6.3.1.2)	* Pseudomonas fluorescens Pf-5 Site: position = -235 score = 4.48614 sequence = TGCACCAAAACGGGTCA Gene: PFL_0386: Glutamine synthetase type I (EC 6.3.1.2)	* Pseudomonas mendocina ymp Site: position = -202 score = 4.42081 sequence = AGCCCTTAAATGGTGCA Site: position = -233 score = 4.06809 sequence = CGCACCAAAATAGGTCT Gene: Pmen_4140: Glutamine synthetase type I (EC 6.3.1.2)	* Pseudomonas stutzeri A1501 Site: position = -212 score = 4.85481 sequence = CGCACCATTAACGCGCA Site: position = -243 score = 4.55771 sequence = CGCACCAAAACAATGCG Gene: PST_0353: Glutamine synthetase type I (EC 6.3.1.2)	* Azotobacter vinelandii AvOP Site: position = -100 score = 4.07032 sequence = TGCTCCCTTGTGGCGCG Site: position = -232 score = 4.13814 sequence = CGCACCAAAATGAAACA Gene: Avin_45850: Glutamine synthetase type I (EC 6.3.1.2)	Glutamine synthetase type I (EC 6.3.1.2)

CRON 4.
ybdK	* Pseudomonas aeruginosa PAO1 Site: position = -118 score = 4.54729 sequence = TGCACCAGACTGGGGCG Gene: PA1730: Carboxylate-amine ligase	Pseudomonas entomophila L48	* Pseudomonas putida KT2440 Site: position = -256 score = 4.06746 sequence = CGCCCTTTTTTGATGCG Site: position = -295 score = 4.47851 sequence = CGCCCCATTTCGGTTCA Gene: PP2688: Carboxylate-amine ligase	* Pseudomonas syringae pv. tomato str. DC3000 Site: position = -119 score = 4.96325 sequence = TGCACAGGAATGGTGCG Gene: PSPTO2059: Carboxylate-amine ligase	2 Pseudomonas fluorescens Pf-5* Gene: PFL_1830: Carboxylate-amine ligase Site: position = -283 score = 4.4866 sequence = TGCACCGATTCTGTTCG Gene: PFL_2518: Carboxylate-amine ligase	* Pseudomonas mendocina ymp Site: position = -120 score = 5.17173 sequence = CGCACCGAGATGGTGCG Gene: Pmen_2597: Carboxylate-amine ligase	Pseudomonas stutzeri A1501	* Azotobacter vinelandii AvOP Site: position = -298 score = 4.56534 sequence = TGCATTTTTTTGGTGCG Gene: Avin_37690: Carboxylate-amine ligase	Carboxylate-amine ligase
PF04168	Pseudomonas aeruginosa PAO1 Gene: PA1731: Conserved hypothetical protein	Pseudomonas entomophila L48	Pseudomonas putida KT2440 Gene: PP2687: Conserved hypothetical protein	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO2060: Conserved hypothetical protein	2 Pseudomonas fluorescens Pf-5 Gene: PFL_1831: Conserved hypothetical protein Gene: PFL_2519: Conserved hypothetical protein	Pseudomonas mendocina ymp Gene: Pmen_2596: Conserved hypothetical protein	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP Gene: Avin_37680: Conserved hypothetical protein	Conserved hypothetical protein
PF01841	Pseudomonas aeruginosa PAO1 Gene: PA1732: Transglutaminase-like protein	Pseudomonas entomophila L48	Pseudomonas putida KT2440 Gene: PP2686: Transglutaminase-like protein	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO2061: Transglutaminase-like protein	2 Pseudomonas fluorescens Pf-5 Gene: PFL_1832: Transglutaminase-like protein Gene: PFL_2520: Transglutaminase-like protein	Pseudomonas mendocina ymp Gene: Pmen_2595: Transglutaminase-like protein	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Transglutaminase-like protein

CRON 5.
alsT	Pseudomonas aeruginosa PAO1 Gene: PA2252: Predicted alanin/sodium symporter	* Pseudomonas entomophila L48 Site: position = -133 score = 5.46852 sequence = CGCACCAAAATGGAGCA Gene: PSEEN0571: Predicted alanin/sodium symporter	Pseudomonas putida KT2440 Gene: PP0496: Predicted alanin/sodium symporter	* Pseudomonas syringae pv. tomato str. DC3000 Site: position = -47 score = 4.77594 sequence = TGCACCGGTATAGTGCG Gene: PSPTO5500: Predicted alanin/sodium symporter	* Pseudomonas fluorescens Pf-5 Site: position = -210 score = 4.76831 sequence = CGCACCGGTATAGTGCG Gene: PFL_6139: Predicted alanin/sodium symporter	Pseudomonas mendocina ymp Gene: Pmen_0135: Predicted alanin/sodium symporter	Pseudomonas stutzeri A1501 Gene: PST_0194: Predicted alanin/sodium symporter	Azotobacter vinelandii AvOP	Predicted alanin/sodium symporter
ansA	Pseudomonas aeruginosa PAO1 Gene: PA2253: L-asparaginase I (EC 3.5.1.1)	Pseudomonas entomophila L48 Gene: PSEEN0570: L-asparaginase I (EC 3.5.1.1)	Pseudomonas putida KT2440 Gene: PP0495: L-asparaginase I (EC 3.5.1.1)	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO5501: L-asparaginase I (EC 3.5.1.1)	Pseudomonas fluorescens Pf-5 Gene: PFL_6140: L-asparaginase I (EC 3.5.1.1)	Pseudomonas mendocina ymp Gene: Pmen_0136: L-asparaginase I (EC 3.5.1.1)	Pseudomonas stutzeri A1501 Gene: PST_0193: L-asparaginase I (EC 3.5.1.1)	Azotobacter vinelandii AvOP Gene: Avin_01180: L-asparaginase I (EC 3.5.1.1)	L-asparaginase I (EC 3.5.1.1)

CRON 6.
amtB2	Pseudomonas aeruginosa PAO1 Gene: PA3039: Ammonium transporter	* Pseudomonas entomophila L48 Site: position = -69 score = 4.7246 sequence = GGCACCGATTCGGTGCA Gene: PSEEN3762: Ammonium transporter	* Pseudomonas putida KT2440 Site: position = -72 score = 4.7246 sequence = GGCACCGATTCGGTGCA Gene: PP2106: Ammonium transporter	Pseudomonas syringae pv. tomato str. DC3000	* Pseudomonas fluorescens Pf-5 Site: position = -54 score = 4.57231 sequence = CGCGCCAAAACGGTTCA Gene: PFL_4230: Ammonium transporter	Pseudomonas mendocina ymp Gene: Pmen_2999: Ammonium transporter	Pseudomonas stutzeri A1501 Gene: PST_1589: Ammonium transporter	Azotobacter vinelandii AvOP	Ammonium transporter

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NtrC - Pseudomonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --