Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing PF04168 gene

Properties
Regulog: NtrC - Pseudomonadaceae
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Proteobacteria/gamma
Built upon 49 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Azotobacter vinelandii AvOP
Position: -298
Score: 4.56534
Sequence: TGCATTTTTTTGGTGCG
Locus tag: Avin_37690
Name: ybdK
Funciton: Carboxylate-amine ligase
Locus tag: Avin_37680
Name: PF04168
Funciton: Conserved hypothetical protein
ybdK-PF04168 -298 4.6 TGCATTTTTTTGGTGCG Avin_37690
Pseudomonas aeruginosa PAO1
Position: -118
Score: 4.54729
Sequence: TGCACCAGACTGGGGCG
Locus tag: PA1730
Name: ybdK
Funciton: Carboxylate-amine ligase
Locus tag: PA1731
Name: PF04168
Funciton: Conserved hypothetical protein
Locus tag: PA1732
Name: PF01841
Funciton: Transglutaminase-like protein
ybdK-PF04168-PF01841 -118 4.5 TGCACCAGACTGGGGCG PA1730
Pseudomonas fluorescens Pf-5
Position: -283
Score: 4.4866
Sequence: TGCACCGATTCTGTTCG
Locus tag: PFL_2518
Name: ybdK
Funciton: Carboxylate-amine ligase
Locus tag: PFL_2519
Name: PF04168
Funciton: Conserved hypothetical protein
Locus tag: PFL_2520
Name: PF01841
Funciton: Transglutaminase-like protein
ybdK-PF04168-PF01841 -283 4.5 TGCACCGATTCTGTTCG PFL_2518
Pseudomonas mendocina ymp
Position: -120
Score: 5.17173
Sequence: CGCACCGAGATGGTGCG
Locus tag: Pmen_2597
Name: ybdK
Funciton: Carboxylate-amine ligase
Locus tag: Pmen_2596
Name: PF04168
Funciton: Conserved hypothetical protein
Locus tag: Pmen_2595
Name: PF01841
Funciton: Transglutaminase-like protein
ybdK-PF04168-PF01841 -120 5.2 CGCACCGAGATGGTGCG Pmen_2597
Pseudomonas putida KT2440
Position: -295
Score: 4.47851
Sequence: CGCCCCATTTCGGTTCA
Position: -256
Score: 4.06746
Sequence: CGCCCTTTTTTGATGCG
Locus tag: PP2688
Name: ybdK
Funciton: Carboxylate-amine ligase
Locus tag: PP2687
Name: PF04168
Funciton: Conserved hypothetical protein
Locus tag: PP2686
Name: PF01841
Funciton: Transglutaminase-like protein
ybdK-PF04168-PF01841 -295 4.5 CGCCCCATTTCGGTTCA PP2688
-256 4.1 CGCCCTTTTTTGATGCG
Pseudomonas syringae pv. tomato str. DC3000
Position: -119
Score: 4.96325
Sequence: TGCACAGGAATGGTGCG
Locus tag: PSPTO2059
Name: ybdK
Funciton: Carboxylate-amine ligase
Locus tag: PSPTO2060
Name: PF04168
Funciton: Conserved hypothetical protein
Locus tag: PSPTO2061
Name: PF01841
Funciton: Transglutaminase-like protein
ybdK-PF04168-PF01841 -119 5 TGCACAGGAATGGTGCG PSPTO2059