Regulon of NtrC in Pseudomonas fluorescens Pf-5

Properties
Regulator type:	Transcription factor
TF locus tag:	PFL_0377
Regulator family:	Fis
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Regulog:	NtrC - Pseudomonadaceae
Statistics of regulated genes:
- Genes	11
- Operons	6
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 49 sites [see more]

Member of regulog collections

By taxonomy - Pseudomonadaceae
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -54 Score: 4.6 Sequence: CGCGCCAAAACGGTTCA Locus tag: PFL_4230 Name: amtB2 Funciton: Ammonium transporter
	PFL_4230	amtB2	Ammonium transporter
Position: -347 Score: 4.5 Sequence: TGCACGTTTTTCGCGCA Position: -314 Score: 5.3 Sequence: CGCACCGTTTTTGTGCG Locus tag: PFL_6020 Name: glnK Funciton: Nitrogen regulatory protein P-II Locus tag: PFL_6019 Name: amtB Funciton: Ammonium transporter
	PFL_6020	glnK	Nitrogen regulatory protein P-II
	PFL_6019	amtB	Ammonium transporter
Position: -210 Score: 4.8 Sequence: CGCACCGGTATAGTGCG Locus tag: PFL_6139 Name: alsT Funciton: Predicted alanin/sodium symporter Locus tag: PFL_6140 Name: ansA Funciton: L-asparaginase I (EC 3.5.1.1)
	PFL_6139	alsT	Predicted alanin/sodium symporter
	PFL_6140	ansA	L-asparaginase I (EC 3.5.1.1)
Position: -235 Score: 4.5 Sequence: TGCACCAAAACGGGTCA Locus tag: PFL_0386 Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2)
	PFL_0386	glnA	Glutamine synthetase type I (EC 6.3.1.2)
Position: -283 Score: 4.5 Sequence: TGCACCGATTCTGTTCG Locus tag: PFL_2518 Name: ybdK Funciton: Carboxylate-amine ligase Locus tag: PFL_2519 Name: PF04168 Funciton: Conserved hypothetical protein Locus tag: PFL_2520 Name: PF01841 Funciton: Transglutaminase-like protein
	PFL_2518	ybdK	Carboxylate-amine ligase
	PFL_2519	PF04168	Conserved hypothetical protein
	PFL_2520	PF01841	Transglutaminase-like protein
Position: -246 Score: 5.4 Sequence: TGCACTATATTGGTGCA Locus tag: PFL_0378 Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-) Locus tag: PFL_0377 Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family
	PFL_0378	ntrB	Nitrogen regulation protein NR(II) (EC 2.7.3.-)
	PFL_0377	ntrC	Nitrogen regulation protein NR(I), Fis family

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD