Regulon of NtrC in Pseudomonas fluorescens Pf-5
| Regulator type: | Transcription factor |
| TF locus tag: | PFL_0377 |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Regulog: | NtrC - Pseudomonadaceae |
| Statistics of regulated genes: | |
| - Genes | 11 |
| - Operons | 6 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -54
Score: 4.6 Sequence: CGCGCCAAAACGGTTCA
Locus tag: PFL_4230
Name: amtB2 Funciton: Ammonium transporter |
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amtB2
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Ammonium transporter
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Position: -347
Score: 4.5 Sequence: TGCACGTTTTTCGCGCA
Position: -314
Score: 5.3 Sequence: CGCACCGTTTTTGTGCG
Locus tag: PFL_6020
Name: glnK Funciton: Nitrogen regulatory protein P-II
Locus tag: PFL_6019
Name: amtB Funciton: Ammonium transporter |
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glnK
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Nitrogen regulatory protein P-II
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amtB
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Ammonium transporter
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Position: -210
Score: 4.8 Sequence: CGCACCGGTATAGTGCG
Locus tag: PFL_6139
Name: alsT Funciton: Predicted alanin/sodium symporter
Locus tag: PFL_6140
Name: ansA Funciton: L-asparaginase I (EC 3.5.1.1) |
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alsT
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Predicted alanin/sodium symporter
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ansA
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L-asparaginase I (EC 3.5.1.1)
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Position: -235
Score: 4.5 Sequence: TGCACCAAAACGGGTCA
Locus tag: PFL_0386
Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2) |
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glnA
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Glutamine synthetase type I (EC 6.3.1.2)
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Position: -283
Score: 4.5 Sequence: TGCACCGATTCTGTTCG
Locus tag: PFL_2518
Name: ybdK Funciton: Carboxylate-amine ligase
Locus tag: PFL_2519
Name: PF04168 Funciton: Conserved hypothetical protein
Locus tag: PFL_2520
Name: PF01841 Funciton: Transglutaminase-like protein |
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ybdK
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Carboxylate-amine ligase
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PF04168
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Conserved hypothetical protein
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PF01841
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Transglutaminase-like protein
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Position: -246
Score: 5.4 Sequence: TGCACTATATTGGTGCA
Locus tag: PFL_0378
Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: PFL_0377
Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family |
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ntrB
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Nitrogen regulation protein NR(II) (EC 2.7.3.-)
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ntrC
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Nitrogen regulation protein NR(I), Fis family
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |