Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NtrC in Pseudomonas fluorescens Pf-5

Properties
Regulator type: Transcription factor
TF locus tag: PFL_0377
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Regulog: NtrC - Pseudomonadaceae
Statistics of regulated genes:
- Genes 11
- Operons 6
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 49 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -54
Score: 4.6
Sequence: CGCGCCAAAACGGTTCA
Locus tag: PFL_4230
Name: amtB2
Funciton: Ammonium transporter
amtB2
Ammonium transporter

Position: -347
Score: 4.5
Sequence: TGCACGTTTTTCGCGCA
Position: -314
Score: 5.3
Sequence: CGCACCGTTTTTGTGCG
Locus tag: PFL_6020
Name: glnK
Funciton: Nitrogen regulatory protein P-II
Locus tag: PFL_6019
Name: amtB
Funciton: Ammonium transporter
glnK
Nitrogen regulatory protein P-II
amtB
Ammonium transporter

Position: -210
Score: 4.8
Sequence: CGCACCGGTATAGTGCG
Locus tag: PFL_6139
Name: alsT
Funciton: Predicted alanin/sodium symporter
Locus tag: PFL_6140
Name: ansA
Funciton: L-asparaginase I (EC 3.5.1.1)
alsT
Predicted alanin/sodium symporter
ansA
L-asparaginase I (EC 3.5.1.1)

Position: -235
Score: 4.5
Sequence: TGCACCAAAACGGGTCA
Locus tag: PFL_0386
Name: glnA
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
glnA
Glutamine synthetase type I (EC 6.3.1.2)

Position: -283
Score: 4.5
Sequence: TGCACCGATTCTGTTCG
Locus tag: PFL_2518
Name: ybdK
Funciton: Carboxylate-amine ligase
Locus tag: PFL_2519
Name: PF04168
Funciton: Conserved hypothetical protein
Locus tag: PFL_2520
Name: PF01841
Funciton: Transglutaminase-like protein
ybdK
Carboxylate-amine ligase
PF04168
Conserved hypothetical protein
PF01841
Transglutaminase-like protein

Position: -246
Score: 5.4
Sequence: TGCACTATATTGGTGCA
Locus tag: PFL_0378
Name: ntrB
Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: PFL_0377
Name: ntrC
Funciton: Nitrogen regulation protein NR(I), Fis family
ntrB
Nitrogen regulation protein NR(II) (EC 2.7.3.-)
ntrC
Nitrogen regulation protein NR(I), Fis family
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD