Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NtrC in Pseudomonas syringae pv. tomato str. DC3000

Properties
Regulator type: Transcription factor
TF locus tag: PSPTO0352
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Regulog: NtrC - Pseudomonadaceae
Statistics of regulated genes:
- Genes 10
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 49 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -348
Score: 4.6
Sequence: TGCACGCTTATGGCGCG
Position: -315
Score: 4.9
Sequence: AGCACCATTGTTGTGCA
Locus tag: PSPTO0217
Name: glnK
Funciton: Nitrogen regulatory protein P-II
Locus tag: PSPTO0218
Name: amtB
Funciton: Ammonium transporter
glnK
Nitrogen regulatory protein P-II
amtB
Ammonium transporter

Position: -47
Score: 4.8
Sequence: TGCACCGGTATAGTGCG
Locus tag: PSPTO5500
Name: alsT
Funciton: Predicted alanin/sodium symporter
Locus tag: PSPTO5501
Name: ansA
Funciton: L-asparaginase I (EC 3.5.1.1)
alsT
Predicted alanin/sodium symporter
ansA
L-asparaginase I (EC 3.5.1.1)

Position: -119
Score: 5
Sequence: TGCACAGGAATGGTGCG
Locus tag: PSPTO2059
Name: ybdK
Funciton: Carboxylate-amine ligase
Locus tag: PSPTO2060
Name: PF04168
Funciton: Conserved hypothetical protein
Locus tag: PSPTO2061
Name: PF01841
Funciton: Transglutaminase-like protein
ybdK
Carboxylate-amine ligase
PF04168
Conserved hypothetical protein
PF01841
Transglutaminase-like protein

Position: -208
Score: 4.9
Sequence: AGCGCCATAACGGTGCG
Locus tag: PSPTO0359
Name: glnA
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
glnA
Glutamine synthetase type I (EC 6.3.1.2)

Position: -267
Score: 5.3
Sequence: AGCACCTTTTTGGTGCA
Position: -50
Score: 4.2
Sequence: AGCACCAGCATTGCGCG
Locus tag: PSPTO0353
Name: ntrB
Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: PSPTO0352
Name: ntrC
Funciton: Nitrogen regulation protein NR(I), Fis family
ntrB
Nitrogen regulation protein NR(II) (EC 2.7.3.-)
ntrC
Nitrogen regulation protein NR(I), Fis family
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD