Regulon of NtrC in Pseudomonas aeruginosa PAO1
| Regulator type: | Transcription factor |
| TF locus tag: | PA5125 |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Regulog: | NtrC - Pseudomonadaceae |
| Statistics of regulated genes: | |
| - Genes | 8 |
| - Operons | 4 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -182
Score: 5.4 Sequence: CGCACCAGATTGGTGCG
Locus tag: PA5124
Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: PA5125
Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family |
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ntrB
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Nitrogen regulation protein NR(II) (EC 2.7.3.-)
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ntrC
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Nitrogen regulation protein NR(I), Fis family
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Position: -118
Score: 4.5 Sequence: TGCACCAGACTGGGGCG
Locus tag: PA1730
Name: ybdK Funciton: Carboxylate-amine ligase
Locus tag: PA1731
Name: PF04168 Funciton: Conserved hypothetical protein
Locus tag: PA1732
Name: PF01841 Funciton: Transglutaminase-like protein |
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ybdK
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Carboxylate-amine ligase
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PF04168
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Conserved hypothetical protein
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PF01841
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Transglutaminase-like protein
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Position: -220
Score: 5.1 Sequence: TGCACCAACATGGAGCA
Position: -207
Score: 5.3 Sequence: AGCACCATAACGGTGCA
Locus tag: PA5119
Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2) |
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glnA
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Glutamine synthetase type I (EC 6.3.1.2)
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Position: -338
Score: 5.2 Sequence: TGCGCCTATTTGGTGCG
Locus tag: PA5288
Name: glnK Funciton: Nitrogen regulatory protein P-II
Locus tag: PA5287
Name: amtB Funciton: Ammonium transporter |
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glnK
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Nitrogen regulatory protein P-II
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amtB
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Ammonium transporter
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |