Regulon of NtrC in Pseudomonas putida KT2440

Properties
Regulator type:	Transcription factor
TF locus tag:	PP5048
Regulator family:	Fis
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Regulog:	NtrC - Pseudomonadaceae
Statistics of regulated genes:
- Genes	9
- Operons	5
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 49 sites [see more]

Member of regulog collections

By taxonomy - Pseudomonadaceae
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -72 Score: 4.7 Sequence: GGCACCGATTCGGTGCA Locus tag: PP2106 Name: amtB2 Funciton: Ammonium transporter
	PP2106	amtB2	Ammonium transporter
Position: -299 Score: 4.6 Sequence: TGCACATTTTTCGCGCA Position: -266 Score: 5.4 Sequence: CGCACCGAAATTGTGCA Locus tag: PP5234 Name: glnK Funciton: Nitrogen regulatory protein P-II Locus tag: PP5233 Name: amtB Funciton: Ammonium transporter
	PP5234	glnK	Nitrogen regulatory protein P-II
	PP5233	amtB	Ammonium transporter
Position: -236 Score: 5.3 Sequence: CGCACCCTATTGGTGCG Position: -205 Score: 4.4 Sequence: CGCATCGTAAGGGTGCA Locus tag: PP5046 Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2)
	PP5046	glnA	Glutamine synthetase type I (EC 6.3.1.2)
Position: -295 Score: 4.5 Sequence: CGCCCCATTTCGGTTCA Position: -256 Score: 4.1 Sequence: CGCCCTTTTTTGATGCG Locus tag: PP2688 Name: ybdK Funciton: Carboxylate-amine ligase Locus tag: PP2687 Name: PF04168 Funciton: Conserved hypothetical protein Locus tag: PP2686 Name: PF01841 Funciton: Transglutaminase-like protein
	PP2688	ybdK	Carboxylate-amine ligase
	PP2687	PF04168	Conserved hypothetical protein
	PP2686	PF01841	Transglutaminase-like protein
Position: -257 Score: 4.7 Sequence: TGCTCTATCTTGGTGCA Locus tag: PP5047 Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-) Locus tag: PP5048 Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family
	PP5047	ntrB	Nitrogen regulation protein NR(II) (EC 2.7.3.-)
	PP5048	ntrC	Nitrogen regulation protein NR(I), Fis family

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD