# TF - PhhR: Pmen_3111 3614904 Pmen_1696 hpd 3614905 Pmen_1697 hmgA 3614906 Pmen_1698 hmgC 3614907 Pmen_1699 hmgB 3614908 Pmen_1700 COG0733 3616357 Pmen_3111 phhR 3616358 Pmen_3112 phhA 3616359 Pmen_3113 phhB 3616360 Pmen_3114 phhC # TF - HexR: Pmen_3144 3616390 Pmen_3144 hexR 3614347 Pmen_1147 glk 3614348 Pmen_1148 gltR 3614349 Pmen_1149 gltS 3614515 Pmen_1311 gapA 3614516 Pmen_1312 edd 3616389 Pmen_3143 zwf 3616388 Pmen_3142 pgl 3616387 Pmen_3141 eda # TF - DesT: Pmen_0667 3615700 Pmen_2469 fabA 3615815 Pmen_2584 plsC 3613856 Pmen_0668 desC 3613857 Pmen_0669 desB # TF - HexR1: Pmen_4485 3613763 Pmen_0576 aceE 3613762 Pmen_0575 aceF 3617753 Pmen_4486 zwf 3617752 Pmen_4485 hexR1 # TF - BirA: Pmen_3926 3617348 Pmen_4088 bioB 3617347 Pmen_4087 bioF 3617346 Pmen_4086 bioH 3617345 Pmen_4085 bioC 3617349 Pmen_4089 null 3617350 Pmen_4090 COG1040 # TF - NrtR: Pmen_1413 3614619 Pmen_1412 pncA 3614618 Pmen_1411 pncB 3614617 Pmen_1410 nadE 3614620 Pmen_1413 nrtR # TF - NrdR: Pmen_3858 3616397 Pmen_3151 nrdA 3614790 Pmen_1583 topA # TF - SahR: Pmen_0455 3613642 Pmen_0455 sahR 3613641 Pmen_0454 metK # TF - Zur: Pmen_4496 3617805 Pmen_4538 folE2 3617806 Pmen_4539 hisI2 3617807 Pmen_4540 DUF37 3617808 Pmen_4541 pyrC2 3617804 Pmen_4537 dksA2 3617803 Pmen_4536 yciC 3617802 Pmen_4535 PF08856 3617113 Pmen_3863 zbp 3617763 Pmen_4496 zur 3617764 Pmen_4497 znuC 3617765 Pmen_4498 znuB 3617762 Pmen_4495 znuA # TF - LldR: Pmen_3633 3616883 Pmen_3633 lldR 3616884 Pmen_3634 lldP 3616885 Pmen_3635 lldD 3616886 Pmen_3636 dld # TF - NorR: Pmen_3579 3616828 Pmen_3580 hmp 3616829 Pmen_3581 null 3616830 Pmen_3582 nnrS 3616827 Pmen_3579 norR # TF - PrpR: Pmen_2079 3615305 Pmen_2079 prpR 3615306 Pmen_2080 prpB 3615307 Pmen_2081 prpC 3615308 Pmen_2082 acnD 3615309 Pmen_2083 prpF # TF - HutC: Pmen_4068 3617333 Pmen_4073 hutI 3617332 Pmen_4072 hutG2 3617331 Pmen_4071 COG3314 3617330 Pmen_4070 hutU 3617329 Pmen_4069 hutH 3617334 Pmen_4074 hutD # TF - IscR: Pmen_3512 3617189 Pmen_3930 erpA 3616759 Pmen_3512 iscR 3616758 Pmen_3511 iscS 3616757 Pmen_3510 iscU 3616756 Pmen_3509 iscA 3616755 Pmen_3508 hscB 3616754 Pmen_3507 hscA 3616753 Pmen_3506 fdx 3616752 Pmen_3505 yfhJ # TF - GlcC: Pmen_0204 3613389 Pmen_0203 glcD 3613388 Pmen_0202 glcE 3613387 Pmen_0201 glcF 3613386 Pmen_0200 glcG 3613385 Pmen_0199 glcB 3613390 Pmen_0204 glcC # TF - NtrC: Pmen_4144 3617403 Pmen_4143 ntrB 3617404 Pmen_4144 ntrC 3615828 Pmen_2597 ybdK 3615827 Pmen_2596 PF04168 3615826 Pmen_2595 PF01841 3613446 Pmen_0259 glnK 3617400 Pmen_4140 glnA # TF - FruR: Pmen_0785 3613976 Pmen_0785 fruR 3613977 Pmen_0786 fruB 3613978 Pmen_0787 fruK 3613979 Pmen_0788 fruA # TF - ModE: Pmen_4091 3617601 Pmen_4339 modA 3617602 Pmen_4340 modB 3617603 Pmen_4341 modC # TF - LexA: Pmen_1587 3616261 Pmen_3015 recA 3616260 Pmen_3014 recX 3616488 Pmen_3241 yebG 3617733 Pmen_4466 PF04055 3614473 Pmen_1270 ruvC 3614474 Pmen_1271 ruvA 3614475 Pmen_1272 ruvB 3615152 Pmen_1936 imuA 3615151 Pmen_1935 imuB 3615150 Pmen_1934 dnaE2 3614794 Pmen_1587 lexA 3614793 Pmen_1586 sulA 3616876 Pmen_3626 recN 3615332 Pmen_2106 PA0922 3617406 Pmen_4146 PSEEN2356 3617407 Pmen_4147 PSEEN2355 3614634 Pmen_1427 dinG 3617370 Pmen_4110 PF08774 3617371 Pmen_4111 COG1199 3616488 Pmen_3241 PF07130 # TF - LiuR: Pmen_2034 3615257 Pmen_2034 liuR 3615256 Pmen_2033 liuA 3615255 Pmen_2032 liuB 3615254 Pmen_2031 liuC 3615253 Pmen_2030 liuD 3615252 Pmen_2029 liuE # TF - PsrA: Pmen_1588 3615939 Pmen_2707 etfB 3615938 Pmen_2706 etfA 3616266 Pmen_3020 rpoS 3615940 Pmen_2708 etfD 3615762 Pmen_2531 null 3615763 Pmen_2532 scp 3613472 Pmen_0285 algQ 3617341 Pmen_4081 acdH1 3614787 Pmen_1580 fadB 3614788 Pmen_1581 fadA 3614795 Pmen_1588 psrA # TF - RutR: Pmen_3699 3616947 Pmen_3697 tsx3 3616948 Pmen_3698 pbuT 3616949 Pmen_3699 rutR 3616950 Pmen_3700 COG1739 3615996 Pmen_2758 COG0726 3615997 Pmen_2759 pucL 3615998 Pmen_2760 allA 3615999 Pmen_2761 COG3748 3617711 Pmen_4444 pbuT4 3616000 Pmen_2762 pbuT2 3616001 Pmen_2763 tsx 3615994 Pmen_2756 pbuT3 # TF - PhnF: Pmen_2887 3616126 Pmen_2887 phnF 3616125 Pmen_2886 phnG 3616124 Pmen_2885 phnH 3616123 Pmen_2884 phnI 3616122 Pmen_2883 phnJ 3616121 Pmen_2882 phnK 3616120 Pmen_2881 phnL 3616119 Pmen_2880 pnhM 3616118 Pmen_2879 phnN 3616117 Pmen_2878 phnP # TF - PhnR: Pmen_1333 3614539 Pmen_1333 phnR 3614538 Pmen_1332 phnS 3614537 Pmen_1331 PF01663 3614536 Pmen_1330 phnU 3614535 Pmen_1329 phnV 3614534 Pmen_1328 phnT 3614533 Pmen_1327 COG0560 3615141 Pmen_1925 phnX # TF - FabR2: Pmen_2619 3615851 Pmen_2620 COG2072 3615852 Pmen_2621 COG0300 3615850 Pmen_2619 fabR2 # TF - RutR3: Pmen_2767 3616005 Pmen_2767 rutR3 3615989 Pmen_2751 xdhA 3615990 Pmen_2752 xdhB 3615991 Pmen_2753 xdhC 3615992 Pmen_2754 guaD 3615994 Pmen_2756 pbuT # RNA - yybP-ykoY 3616916 Pmen_3666 COG2119 # RNA - TPP 3613795 Pmen_0609 thiC # RNA - SAH_riboswitch 3613636 Pmen_0449 ahcY 3613635 Pmen_0448 metF # RNA - mini-ykkC 3614565 Pmen_1358 ucaA # RNA - ykkC-yxkD 3614573 Pmen_1366 uctB1 3614572 Pmen_1365 uctP 3614571 Pmen_1364 uctA 3614568 Pmen_1361 uctB1 3614567 Pmen_1360 amt1 3614566 Pmen_1359 amt2 3614565 Pmen_1358 ucaA # RNA - S15 3616853 Pmen_3605 rpsO # RNA - Cobalamin 3617095 Pmen_3845 btuB1 3614961 Pmen_1750 btuR 3614962 Pmen_1751 cbiA 3614963 Pmen_1752 bluB 3614964 Pmen_1753 cbiB 3614965 Pmen_1754 cobD 3614966 Pmen_1755 cbiP 3614967 Pmen_1756 cobU 3614968 Pmen_1757 cobT 3614969 Pmen_1758 cobC 3614970 Pmen_1759 cobS 3617838 Pmen_4571 cobG 3617839 Pmen_4572 cbiC 3617840 Pmen_4573 cbiL 3617841 Pmen_4574 cbiGH 3617854 Pmen_4587 null 3617853 Pmen_4586 cobN 3617852 Pmen_4585 chII 3617851 Pmen_4584 chlD 3617850 Pmen_4583 cbiL 3617834 Pmen_4567 btuB 3617833 Pmen_4566 btuD 3617832 Pmen_4565 btuF 3617831 Pmen_4564 btuC 3617002 Pmen_3752 cbtC # RNA - FMN 3617106 Pmen_3856 ribE2 3617105 Pmen_3855 ribBA 3617104 Pmen_3854 ribH # TF - SdaR: Pmen_1437 3614645 Pmen_1438 grtP 3614646 Pmen_1439 garK # TF - GntR: Pmen_2566 3615800 Pmen_2569 gntKZ 3615799 Pmen_2568 gntY 3615798 Pmen_2567 gntX 3615797 Pmen_2566 gntR # TF - SoxR: Pmen_1341 3614548 Pmen_1342 PF03358 3614547 Pmen_1341 soxR # TF - CueR: Pmen_0812 3614012 Pmen_0821 copA 3614014 Pmen_0823 copZ 3615452 Pmen_2225 copZ # TF - CadR-PbrR: Pmen_4226 3614374 Pmen_1174 czcR 3614373 Pmen_1173 PF00512 3617485 Pmen_4225 cadA # TF - PSPTO1352: Pmen_0702 3613892 Pmen_0704 null 3613891 Pmen_0703 null 3613890 Pmen_0702 PSPTO1352 # TF - PA1520: Pmen_2755 3613349 Pmen_0163 PA2938 3616000 Pmen_2762 pbuX 3616001 Pmen_2763 null 3616947 Pmen_3697 PA0165 3616007 Pmen_2769 gcl 3616008 Pmen_2770 hyi 3616009 Pmen_2771 garR 3616002 Pmen_2764 Pmen_2764 3615993 Pmen_2755 PA1520 3615995 Pmen_2757 PA1518 3615996 Pmen_2758 PA1517 3615997 Pmen_2759 uraO 3615998 Pmen_2760 allA 3615999 Pmen_2761 PA1513 3616006 Pmen_2768 PA1503 3615994 Pmen_2756 PA1519 # TF - UreR: Pmen_0307 3613493 Pmen_0306 ureA 3613492 Pmen_0305 ureB 3613491 Pmen_0304 ureC 3613490 Pmen_0303 ureD 3613489 Pmen_0302 ureH 3613494 Pmen_0307 ureR # TF - MetR: Pmen_1682 3615386 Pmen_2159 metH 3614890 Pmen_1682 metR 3614891 Pmen_1683 metE # TF - FdsR: Pmen_0386 3613573 Pmen_0386 fdsR 3613574 Pmen_0387 fdsG 3613575 Pmen_0388 fdsB 3613576 Pmen_0389 fdsA 3613577 Pmen_0390 fdsD # TF - PdxQ3: Pmen_1514 3614722 Pmen_1515 null # TF - PA0268: Pmen_1085 3614284 Pmen_1084 PF02627 3614283 Pmen_1083 PF00892 # TF - YdcR: Pmen_3095 3616340 Pmen_3094 COG0348 3616341 Pmen_3095 ydcR # TF - GcvR: Pmen_1348 3614552 Pmen_1346 gcvH 3614551 Pmen_1345 gcvP 3614550 Pmen_1344 glyA 3614549 Pmen_1343 gcvT # TF - YjiR: Pmen_0240 3613428 Pmen_0241 yjiS # TF - GguR: Pmen_3305 3614418 Pmen_1215 kdgD 3614419 Pmen_1216 gudD 3614420 Pmen_1217 garP 3614421 Pmen_1218 garD 3614422 Pmen_1219 serA 3616546 Pmen_3299 udh 3616547 Pmen_3300 uxuL 3616548 Pmen_3301 uxuP 3616549 Pmen_3302 uxuQ 3616550 Pmen_3303 uxuM 3616551 Pmen_3304 PF00892 3616552 Pmen_3305 gguR 3614417 Pmen_1214 gudD2 3614416 Pmen_1213 tctC 3614415 Pmen_1212 tctB 3614414 Pmen_1211 tctA 3616553 Pmen_3306 aldE # TF - PhrR: Pmen_1072 3614275 Pmen_1075 COG3380 3614274 Pmen_1074 PF09493 3614276 Pmen_1076 COG1090 3614277 Pmen_1077 hemH 3614559 Pmen_1353 mcp1 3616535 Pmen_3288 folM 3616536 Pmen_3289 folE 3616537 Pmen_3290 folB 3616538 Pmen_3291 PF06844 3616539 Pmen_3292 PF08888 3614273 Pmen_1073 COG3272 3614272 Pmen_1072 phrR 3614271 Pmen_1071 phr 3614270 Pmen_1070 PF07366 3614269 Pmen_1069 PF00106 3614268 Pmen_1068 PF01593 3614267 Pmen_1067 PF07103 3614266 Pmen_1066 PF02353 3614265 Pmen_1065 PF11086 # TF - PdxW2: Pmen_0130 3613317 Pmen_0131 pdxO2 3613318 Pmen_0132 COG456 (RimI), PF00583 3613319 Pmen_0133 COG1670 (RimL), PF00583