Regulon of GguR in Pseudomonas mendocina ymp

Properties
Regulator type:	Transcription factor
TF locus tag:	Pmen_3305
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Glucuronate utilization; Glucarate utilization; Galacturonate utilization; Galactarate utilization
Effector:
Regulog:	GguR - Pseudomonadaceae
Statistics of regulated genes:
- Genes	17
- Operons	5
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 25 sites [see more]

Member of regulog collections

By taxonomy - Pseudomonadaceae
By trascription factor - GguR
By TF family - GntR/Others
By pathway - Glucuronate utilization
By pathway - Glucarate utilization
By pathway - Galacturonate utilization
By pathway - Galactarate utilization

Regulated operons
	Locus Tag	Name	Function
Position: -275 Score: 5.1 Sequence: ATGTTGTCGTATGACCT Position: -76 Score: 4.7 Sequence: TTGTTGTACGATAACGT Locus tag: Pmen_1215 Name: kdgD Funciton: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) Locus tag: Pmen_1216 Name: gudD Funciton: Glucarate dehydratase (EC 4.2.1.40) Locus tag: Pmen_1217 Name: garP Funciton: D-galactarate permease Locus tag: Pmen_1218 Name: garD Funciton: D-galactarate dehydratase (EC 4.2.1.42) Locus tag: Pmen_1219 Name: serA Funciton: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
	Pmen_1215	kdgD	5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
	Pmen_1216	gudD	Glucarate dehydratase (EC 4.2.1.40)
	Pmen_1217	garP	D-galactarate permease
	Pmen_1218	garD	D-galactarate dehydratase (EC 4.2.1.42)
	Pmen_1219	serA	D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Position: -316 Score: 4.8 Sequence: ACGTTGTCATACAACTT Position: -60 Score: 5 Sequence: AAGTCATACGACAACGT Locus tag: Pmen_3299 Name: udh Funciton: Uronate dehydrogenase (EC 1.1.1.203) Locus tag: Pmen_3300 Name: uxuL Funciton: Predicted glucuronolactone/galactarolactone lactonase Locus tag: Pmen_3301 Name: uxuP Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component Locus tag: Pmen_3302 Name: uxuQ Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component Locus tag: Pmen_3303 Name: uxuM Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component Locus tag: Pmen_3304 Name: PF00892 Funciton: Drug/metabolite transporter
	Pmen_3299	udh	Uronate dehydrogenase (EC 1.1.1.203)
	Pmen_3300	uxuL	Predicted glucuronolactone/galactarolactone lactonase
	Pmen_3301	uxuP	Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
	Pmen_3302	uxuQ	Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
	Pmen_3303	uxuM	Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
	Pmen_3304	PF00892	Drug/metabolite transporter
Position: -63 Score: 4.8 Sequence: GTGTCATCGTACAACTG Locus tag: Pmen_3305 Name: gguR Funciton: Predicted D-glucarate or D-galactorate utilization regulator, GntR family
	Pmen_3305	gguR	Predicted D-glucarate or D-galactorate utilization regulator, GntR family
Position: -450 Score: 4.7 Sequence: ACGTTATCGTACAACAA Position: -251 Score: 5.1 Sequence: AGGTCATACGACAACAT Locus tag: Pmen_1214 Name: gudD2 Funciton: Glucarate dehydratase (EC 4.2.1.40) Locus tag: Pmen_1213 Name: tctC Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates Locus tag: Pmen_1212 Name: tctB Funciton: Tripartite tricarboxylate transporter family small permease component, putative transporter for uronates Locus tag: Pmen_1211 Name: tctA Funciton: Tripartite tricarboxylate transporter family large permease component, putative transporter for uronates
	Pmen_1214	gudD2	Glucarate dehydratase (EC 4.2.1.40)
	Pmen_1213	tctC	Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
	Pmen_1212	tctB	Tripartite tricarboxylate transporter family small permease component, putative transporter for uronates
	Pmen_1211	tctA	Tripartite tricarboxylate transporter family large permease component, putative transporter for uronates
Position: -54 Score: 4.8 Sequence: CAGTTGTACGATGACAC Locus tag: Pmen_3306 Name: aldE Funciton: Aldose 1-epimerase (EC 5.1.3.3)
	Pmen_3306	aldE	Aldose 1-epimerase (EC 5.1.3.3)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of GguR in Pseudomonas mendocina ymp

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --