Regulog GguR - Pseudomonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Glucuronate utilization; Glucarate utilization; Galacturonate utilization; Galactarate utilization
Effector:
Phylum:	Proteobacteria/Gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 25 sites [see more]

Member of regulog collections

By taxonomy - Pseudomonadaceae
By trascription factor - GguR
By TF family - GntR/Others
By pathway - Glucuronate utilization
By pathway - Glucarate utilization
By pathway - Galacturonate utilization
By pathway - Galactarate utilization

Statistics of regulated genes
Genome	Genes	Operons
Azotobacter vinelandii AvOP	2	2
Pseudomonas aeruginosa PAO1
Pseudomonas entomophila L48	8	4
Pseudomonas fluorescens Pf-5
Pseudomonas mendocina ymp	17	5
Pseudomonas putida KT2440	15	5
Pseudomonas stutzeri A1501
Pseudomonas syringae pv. tomato str. DC3000	12	4

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
gudD2	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	* Pseudomonas mendocina ymp Site: position = -450 score = 4.71593 sequence = ACGTTATCGTACAACAA Site: position = -251 score = 5.08919 sequence = AGGTCATACGACAACAT Gene: Pmen_1214: Glucarate dehydratase (EC 4.2.1.40)	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000	Glucarate dehydratase (EC 4.2.1.40)
tctC	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp Gene: Pmen_1213: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000	Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
tctB	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp Gene: Pmen_1212: Tripartite tricarboxylate transporter family small permease component, putative transporter for uronates	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000	Tripartite tricarboxylate transporter family small permease component, putative transporter for uronates
tctA	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp Gene: Pmen_1211: Tripartite tricarboxylate transporter family large permease component, putative transporter for uronates	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000	Tripartite tricarboxylate transporter family large permease component, putative transporter for uronates

CRON 2.
exuT	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	* Pseudomonas syringae pv. tomato str. DC3000 Site: position = -385 score = 4.2377 sequence = CAGTCATCGTATAACGA Site: position = -265 score = 5.55264 sequence = ATGTTGTACGACAACAT Gene: PSPTO5219: Hexuronate transporter	Hexuronate transporter

CRON 3.
kdgD	* Azotobacter vinelandii AvOP Site: position = -72 score = 4.92493 sequence = AAGTCATACGATAACGT Gene: Avin_05220: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	Pseudomonas aeruginosa PAO1	* Pseudomonas entomophila L48 Site: position = -71 score = 5.47998 sequence = ATGTTGTACGATAACTT Gene: PSEEN2658: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	Pseudomonas fluorescens Pf-5	* Pseudomonas mendocina ymp Site: position = -275 score = 5.08919 sequence = ATGTTGTCGTATGACCT Site: position = -76 score = 4.71593 sequence = TTGTTGTACGATAACGT Gene: Pmen_1215: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	* Pseudomonas putida KT2440 Site: position = -71 score = 5.28576 sequence = AGGTTGTACGATAACTT Gene: PP3599: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	Pseudomonas stutzeri A1501	* Pseudomonas syringae pv. tomato str. DC3000 Site: position = -77 score = 5.0964 sequence = CAGTTGTACGATGACTT Gene: PSPTO4549: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
gudD	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48 Gene: PSEEN0731: Glucarate dehydratase (EC 4.2.1.40)	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp Gene: Pmen_1216: Glucarate dehydratase (EC 4.2.1.40)	Pseudomonas putida KT2440 Gene: PP4757: Glucarate dehydratase (EC 4.2.1.40)	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO3285: Glucarate dehydratase (EC 4.2.1.40)	Glucarate dehydratase (EC 4.2.1.40)
garP	Azotobacter vinelandii AvOP Gene: Avin_05240: D-galactarate permease	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48 Gene: PSEEN2657: D-galactarate permease	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp Gene: Pmen_1217: D-galactarate permease	Pseudomonas putida KT2440 Gene: PP3600: D-galactarate permease	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO4548: D-galactarate permease	D-galactarate permease
garD	Azotobacter vinelandii AvOP Gene: Avin_05250: D-galactarate dehydratase (EC 4.2.1.42)	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48 Gene: PSEEN2656: D-galactarate dehydratase (EC 4.2.1.42)	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp Gene: Pmen_1218: D-galactarate dehydratase (EC 4.2.1.42)	Pseudomonas putida KT2440 Gene: PP3601: D-galactarate dehydratase (EC 4.2.1.42)	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO4547: D-galactarate dehydratase (EC 4.2.1.42)	D-galactarate dehydratase (EC 4.2.1.42)
serA	Azotobacter vinelandii AvOP Gene: Avin_05260: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp Gene: Pmen_1219: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Pseudomonas putida KT2440	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000	D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
kgsD	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48 Gene: PSEEN2655: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas putida KT2440 Gene: PP3602: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)	Pseudomonas stutzeri A1501	* Pseudomonas syringae pv. tomato str. DC3000 Site: position = -163 score = 5.0964 sequence = AAGTTGTACGATGACTG Gene: PSPTO3323: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)	Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
gguT	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	* Pseudomonas entomophila L48 Site: position = -105 score = 5.28385 sequence = GTGTTGTCGTACAACTT Gene: PSEEN0730: Predicted hexarate transporter	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	* Pseudomonas putida KT2440 Site: position = -79 score = 5.14016 sequence = ATCTTGTCGTACAACTT Gene: PP4758: Predicted hexarate transporter	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO3284: Predicted hexarate transporter	Predicted hexarate transporter

CRON 4.
udh	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	* Pseudomonas mendocina ymp Site: position = -316 score = 4.75711 sequence = ACGTTGTCATACAACTT Site: position = -60 score = 5.01958 sequence = AAGTCATACGACAACGT Gene: Pmen_3299: Uronate dehydrogenase (EC 1.1.1.203)	* Pseudomonas putida KT2440 Site: position = -43 score = 5.11119 sequence = AAGTCATACGACAACCT Gene: PP1171: Uronate dehydrogenase (EC 1.1.1.203)	Pseudomonas stutzeri A1501	* Pseudomonas syringae pv. tomato str. DC3000 Site: position = -48 score = 5.07441 sequence = AAGTCATACGACAACAG Gene: PSPTO1053: Uronate dehydrogenase (EC 1.1.1.203)	Uronate dehydrogenase (EC 1.1.1.203)
uxuL	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp Gene: Pmen_3300: Predicted glucuronolactone/galactarolactone lactonase	Pseudomonas putida KT2440 Gene: PP1170: Predicted glucuronolactone/galactarolactone lactonase	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO1052: Predicted glucuronolactone/galactarolactone lactonase	Predicted glucuronolactone/galactarolactone lactonase
uxuP	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp Gene: Pmen_3301: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component	Pseudomonas putida KT2440 Gene: PP1169: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO1051: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component	Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
uxuQ	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp Gene: Pmen_3302: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component	Pseudomonas putida KT2440 Gene: PP_1168: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO1050: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component	Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
uxuM	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp Gene: Pmen_3303: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component	Pseudomonas putida KT2440 Gene: PP1167: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO1049: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component	Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
PF00892	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp Gene: Pmen_3304: Drug/metabolite transporter	Pseudomonas putida KT2440 Gene: PP1166: Drug/metabolite transporter	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO1048: Drug/metabolite transporter	Drug/metabolite transporter
aldE	Azotobacter vinelandii AvOP	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas fluorescens Pf-5	* Pseudomonas mendocina ymp Site: position = -54 score = 4.78363 sequence = CAGTTGTACGATGACAC Gene: Pmen_3306: Aldose 1-epimerase (EC 5.1.3.3)	Pseudomonas putida KT2440 Gene: PP1165: Aldose 1-epimerase (EC 5.1.3.3)	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO1047: Aldose 1-epimerase (EC 5.1.3.3)	Aldose 1-epimerase (EC 5.1.3.3)

CRON 5.
gguR	2 Azotobacter vinelandii AvOP* Gene: Avin_32950: Predicted D-glucarate or D-galactorate utilization regulator, GntR family Site: position = -213 score = 4.50449 sequence = ATGTCATCATATGACTT Site: position = -63 score = 4.53025 sequence = CTATTGTCGTACGACTT Gene: Avin_05190: Predicted D-glucarate or D-galactorate utilization regulator, GntR family	Pseudomonas aeruginosa PAO1	2 Pseudomonas entomophila L48* Site: position = -63 score = 4.78613 sequence = ATGTGATCGTACAACTG Gene: PSEEN2654: Predicted D-glucarate or D-galactorate utilization regulator, GntR family Site: position = -201 score = 5.28385 sequence = AAGTTGTACGACAACAC Gene: PSEEN0729: Predicted D-glucarate or D-galactorate utilization regulator, GntR family	Pseudomonas fluorescens Pf-5	* Pseudomonas mendocina ymp Site: position = -63 score = 4.78363 sequence = GTGTCATCGTACAACTG Gene: Pmen_3305: Predicted D-glucarate or D-galactorate utilization regulator, GntR family	2 Pseudomonas putida KT2440* Site: position = -47 score = 4.56991 sequence = ATGTGATCGTACAACCG Gene: PP3603: Predicted D-glucarate or D-galactorate utilization regulator, GntR family Site: position = -104 score = 5.14016 sequence = AAGTTGTACGACAAGAT Gene: PP4759: Predicted D-glucarate or D-galactorate utilization regulator, GntR family	Pseudomonas stutzeri A1501	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO3283: Predicted D-glucarate or D-galactorate utilization regulator, GntR family	Predicted D-glucarate or D-galactorate utilization regulator, GntR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog GguR - Pseudomonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --