Regulog GguR - Pseudomonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Glucuronate utilization; Glucarate utilization; Galacturonate utilization; Galactarate utilization |
| Effector: | |
| Phylum: | Proteobacteria/Gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By trascription factor - GguR
- By TF family - GntR/Others
- By pathway - Glucuronate utilization
- By pathway - Glucarate utilization
- By pathway - Galacturonate utilization
- By pathway - Galactarate utilization
| Genome | Genes | Operons |
|---|---|---|
| Azotobacter vinelandii AvOP | 2 | 2 |
| Pseudomonas aeruginosa PAO1 | ||
| Pseudomonas entomophila L48 | 8 | 4 |
| Pseudomonas fluorescens Pf-5 | ||
| Pseudomonas mendocina ymp | 17 | 5 |
| Pseudomonas putida KT2440 | 15 | 5 |
| Pseudomonas stutzeri A1501 | ||
| Pseudomonas syringae pv. tomato str. DC3000 | 12 | 4 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| gudD2 |
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Pseudomonas mendocina ymp Site: position = -450 score = 4.71593 sequence = ACGTTATCGTACAACAA Site: position = -251 score = 5.08919 sequence = AGGTCATACGACAACAT Gene: Pmen_1214: Glucarate dehydratase (EC 4.2.1.40) |
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Glucarate dehydratase (EC 4.2.1.40) |
| tctC |
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Gene: Pmen_1213: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
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Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
| tctB |
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Gene: Pmen_1212: Tripartite tricarboxylate transporter family small permease component, putative transporter for uronates |
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Tripartite tricarboxylate transporter family small permease component, putative transporter for uronates |
| tctA |
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Gene: Pmen_1211: Tripartite tricarboxylate transporter family large permease component, putative transporter for uronates |
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Tripartite tricarboxylate transporter family large permease component, putative transporter for uronates |
| CRON 2. | |||||||||
| exuT |
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*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -385 score = 4.2377 sequence = CAGTCATCGTATAACGA Site: position = -265 score = 5.55264 sequence = ATGTTGTACGACAACAT Gene: PSPTO5219: Hexuronate transporter |
Hexuronate transporter |
| CRON 3. | |||||||||
| kdgD |
*
Azotobacter vinelandii AvOP Site: position = -72 score = 4.92493 sequence = AAGTCATACGATAACGT Gene: Avin_05220: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
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*
Pseudomonas entomophila L48 Site: position = -71 score = 5.47998 sequence = ATGTTGTACGATAACTT Gene: PSEEN2658: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
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*
Pseudomonas mendocina ymp Site: position = -275 score = 5.08919 sequence = ATGTTGTCGTATGACCT Site: position = -76 score = 4.71593 sequence = TTGTTGTACGATAACGT Gene: Pmen_1215: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
*
Pseudomonas putida KT2440 Site: position = -71 score = 5.28576 sequence = AGGTTGTACGATAACTT Gene: PP3599: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
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*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -77 score = 5.0964 sequence = CAGTTGTACGATGACTT Gene: PSPTO4549: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
| gudD |
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Gene: PSEEN0731: Glucarate dehydratase (EC 4.2.1.40) |
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Gene: Pmen_1216: Glucarate dehydratase (EC 4.2.1.40) |
Gene: PP4757: Glucarate dehydratase (EC 4.2.1.40) |
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Gene: PSPTO3285: Glucarate dehydratase (EC 4.2.1.40) |
Glucarate dehydratase (EC 4.2.1.40) |
| garP |
Gene: Avin_05240: D-galactarate permease |
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Gene: PSEEN2657: D-galactarate permease |
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Gene: Pmen_1217: D-galactarate permease |
Gene: PP3600: D-galactarate permease |
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Gene: PSPTO4548: D-galactarate permease |
D-galactarate permease |
| garD |
Gene: Avin_05250: D-galactarate dehydratase (EC 4.2.1.42) |
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Gene: PSEEN2656: D-galactarate dehydratase (EC 4.2.1.42) |
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Gene: Pmen_1218: D-galactarate dehydratase (EC 4.2.1.42) |
Gene: PP3601: D-galactarate dehydratase (EC 4.2.1.42) |
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Gene: PSPTO4547: D-galactarate dehydratase (EC 4.2.1.42) |
D-galactarate dehydratase (EC 4.2.1.42) |
| serA |
Gene: Avin_05260: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
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Gene: Pmen_1219: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
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D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
| kgsD |
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Gene: PSEEN2655: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) |
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Gene: PP3602: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) |
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*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -163 score = 5.0964 sequence = AAGTTGTACGATGACTG Gene: PSPTO3323: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) |
Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) |
| gguT |
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*
Pseudomonas entomophila L48 Site: position = -105 score = 5.28385 sequence = GTGTTGTCGTACAACTT Gene: PSEEN0730: Predicted hexarate transporter |
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Pseudomonas putida KT2440 Site: position = -79 score = 5.14016 sequence = ATCTTGTCGTACAACTT Gene: PP4758: Predicted hexarate transporter |
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Gene: PSPTO3284: Predicted hexarate transporter |
Predicted hexarate transporter |
| CRON 4. | |||||||||
| udh |
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*
Pseudomonas mendocina ymp Site: position = -316 score = 4.75711 sequence = ACGTTGTCATACAACTT Site: position = -60 score = 5.01958 sequence = AAGTCATACGACAACGT Gene: Pmen_3299: Uronate dehydrogenase (EC 1.1.1.203) |
*
Pseudomonas putida KT2440 Site: position = -43 score = 5.11119 sequence = AAGTCATACGACAACCT Gene: PP1171: Uronate dehydrogenase (EC 1.1.1.203) |
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*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -48 score = 5.07441 sequence = AAGTCATACGACAACAG Gene: PSPTO1053: Uronate dehydrogenase (EC 1.1.1.203) |
Uronate dehydrogenase (EC 1.1.1.203) |
| uxuL |
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Gene: Pmen_3300: Predicted glucuronolactone/galactarolactone lactonase |
Gene: PP1170: Predicted glucuronolactone/galactarolactone lactonase |
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Gene: PSPTO1052: Predicted glucuronolactone/galactarolactone lactonase |
Predicted glucuronolactone/galactarolactone lactonase |
| uxuP |
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Gene: Pmen_3301: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component |
Gene: PP1169: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component |
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Gene: PSPTO1051: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component |
Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component |
| uxuQ |
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Gene: Pmen_3302: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component |
Gene: PP_1168: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component |
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Gene: PSPTO1050: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component |
Predicted glucuronate /galacturonate TRAP-type transporter, small permease component |
| uxuM |
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Gene: Pmen_3303: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component |
Gene: PP1167: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component |
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Gene: PSPTO1049: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component |
Predicted glucuronate /galacturonate TRAP-type transporter, large permease component |
| PF00892 |
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Gene: Pmen_3304: Drug/metabolite transporter |
Gene: PP1166: Drug/metabolite transporter |
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Gene: PSPTO1048: Drug/metabolite transporter |
Drug/metabolite transporter |
| aldE |
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*
Pseudomonas mendocina ymp Site: position = -54 score = 4.78363 sequence = CAGTTGTACGATGACAC Gene: Pmen_3306: Aldose 1-epimerase (EC 5.1.3.3) |
Gene: PP1165: Aldose 1-epimerase (EC 5.1.3.3) |
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Gene: PSPTO1047: Aldose 1-epimerase (EC 5.1.3.3) |
Aldose 1-epimerase (EC 5.1.3.3) |
| CRON 5. | |||||||||
| gguR |
*2
Azotobacter vinelandii AvOP Gene: Avin_32950: Predicted D-glucarate or D-galactorate utilization regulator, GntR family Site: position = -213 score = 4.50449 sequence = ATGTCATCATATGACTT Site: position = -63 score = 4.53025 sequence = CTATTGTCGTACGACTT Gene: Avin_05190: Predicted D-glucarate or D-galactorate utilization regulator, GntR family |
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*2
Pseudomonas entomophila L48 Site: position = -63 score = 4.78613 sequence = ATGTGATCGTACAACTG Gene: PSEEN2654: Predicted D-glucarate or D-galactorate utilization regulator, GntR family Site: position = -201 score = 5.28385 sequence = AAGTTGTACGACAACAC Gene: PSEEN0729: Predicted D-glucarate or D-galactorate utilization regulator, GntR family |
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*
Pseudomonas mendocina ymp Site: position = -63 score = 4.78363 sequence = GTGTCATCGTACAACTG Gene: Pmen_3305: Predicted D-glucarate or D-galactorate utilization regulator, GntR family |
*2
Pseudomonas putida KT2440 Site: position = -47 score = 4.56991 sequence = ATGTGATCGTACAACCG Gene: PP3603: Predicted D-glucarate or D-galactorate utilization regulator, GntR family Site: position = -104 score = 5.14016 sequence = AAGTTGTACGACAAGAT Gene: PP4759: Predicted D-glucarate or D-galactorate utilization regulator, GntR family |
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Gene: PSPTO3283: Predicted D-glucarate or D-galactorate utilization regulator, GntR family |
Predicted D-glucarate or D-galactorate utilization regulator, GntR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |