Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing garD gene

Properties
Regulog: GguR - Pseudomonadaceae
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Glucuronate utilization; Glucarate utilization; Galacturonate utilization; Galactarate utilization
Effector:
Phylum: Proteobacteria/Gamma
Built upon 25 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Pseudomonas entomophila L48
Position: -71
Score: 5.47998
Sequence: ATGTTGTACGATAACTT
Locus tag: PSEEN2658
Name: kdgD
Funciton: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
Locus tag: PSEEN2657
Name: garP
Funciton: D-galactarate permease
Locus tag: PSEEN2656
Name: garD
Funciton: D-galactarate dehydratase (EC 4.2.1.42)
Locus tag: PSEEN2655
Name: kgsD
Funciton: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
kdgD-garP-garD-kgsD -71 5.5 ATGTTGTACGATAACTT PSEEN2658
Pseudomonas mendocina ymp
Position: -275
Score: 5.08919
Sequence: ATGTTGTCGTATGACCT
Position: -76
Score: 4.71593
Sequence: TTGTTGTACGATAACGT
Locus tag: Pmen_1215
Name: kdgD
Funciton: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
Locus tag: Pmen_1216
Name: gudD
Funciton: Glucarate dehydratase (EC 4.2.1.40)
Locus tag: Pmen_1217
Name: garP
Funciton: D-galactarate permease
Locus tag: Pmen_1218
Name: garD
Funciton: D-galactarate dehydratase (EC 4.2.1.42)
Locus tag: Pmen_1219
Name: serA
Funciton: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
kdgD-gudD-garP-garD-serA -275 5.1 ATGTTGTCGTATGACCT Pmen_1215
-76 4.7 TTGTTGTACGATAACGT
Pseudomonas putida KT2440
Position: -71
Score: 5.28576
Sequence: AGGTTGTACGATAACTT
Locus tag: PP3599
Name: kdgD
Funciton: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
Locus tag: PP3600
Name: garP
Funciton: D-galactarate permease
Locus tag: PP3601
Name: garD
Funciton: D-galactarate dehydratase (EC 4.2.1.42)
Locus tag: PP3602
Name: kgsD
Funciton: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
kdgD-garP-garD-kgsD -71 5.3 AGGTTGTACGATAACTT PP3599
Pseudomonas syringae pv. tomato str. DC3000
Position: -77
Score: 5.0964
Sequence: CAGTTGTACGATGACTT
Locus tag: PSPTO4549
Name: kdgD
Funciton: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
Locus tag: PSPTO4548
Name: garP
Funciton: D-galactarate permease
Locus tag: PSPTO4547
Name: garD
Funciton: D-galactarate dehydratase (EC 4.2.1.42)
kdgD-garP-garD -77 5.1 CAGTTGTACGATGACTT PSPTO4549