Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of PA1520 in Pseudomonas mendocina ymp

Properties
Regulator type: Transcription factor
TF locus tag: Pmen_2755
Regulator family: GntR/Others
Regulation mode:
Biological process: Xanthine utilization; Allantoin utilization
Effector:
Regulog: PA1520 - Pseudomonadaceae
Statistics of regulated genes:
- Genes 16
- Operons 10
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 100 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -78
Score: 4
Sequence: ATGTATACAA
Position: -44
Score: 3.5
Sequence: GTGTCTACAG
Locus tag: Pmen_0163
Name: PA2938
Funciton: Xanthine/uracil permease family protein
Pmen_0163
PA2938
Xanthine/uracil permease family protein
Position: -162
Score: 4.8
Sequence: TTGTGCACAA
Locus tag: Pmen_2762
Name: pbuX
Funciton: Xanthine permease
Locus tag: Pmen_2763
Name: null
Funciton: Nucleoside-binding outer membrane protein
Pmen_2762
pbuX
Xanthine permease
Pmen_2763
Nucleoside-binding outer membrane protein
Position: -113
Score: 4
Sequence: TTGAACACAA
Locus tag: Pmen_3697
Name: PA0165
Funciton: Nucleoside-binding outer membrane protein
Pmen_3697
PA0165
Nucleoside-binding outer membrane protein
Position: -185
Score: 4
Sequence: TTGTATACAT
Position: -35
Score: 4.7
Sequence: TTGTATACAA
Locus tag: Pmen_2769
Name: gcl
Funciton: Glyoxylate carboligase (EC 4.1.1.47)
Locus tag: Pmen_2770
Name: hyi
Funciton: Hydroxypyruvate isomerase (EC 5.3.1.22)
Locus tag: Pmen_2771
Name: garR
Funciton: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)
Pmen_2769
gcl
Glyoxylate carboligase (EC 4.1.1.47)
Pmen_2770
hyi
Hydroxypyruvate isomerase (EC 5.3.1.22)
Pmen_2771
garR
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)
Position: -109
Score: 4
Sequence: TTGTGTGCAA
Position: -66
Score: 4.6
Sequence: CTGTGTACAA
Position: -20
Score: 4.1
Sequence: CTGTATACAC
Locus tag: Pmen_2764
Name: Pmen_2764
Funciton: Hydantoin permease
Pmen_2764
Pmen_2764
Hydantoin permease
Position: -435
Score: 4.7
Sequence: TTGTATACAA
Position: -114
Score: 4.6
Sequence: CTGTGTACAA
Locus tag: Pmen_2755
Name: PA1520
Funciton: Transcriptional regulator, GntR family
Pmen_2755
PA1520
Transcriptional regulator, GntR family
Position: -328
Score: 4.7
Sequence: TTGTATACAA
Position: -147
Score: 4.8
Sequence: TTGTGTACAA
Locus tag: Pmen_2757
Name: PA1518
Funciton: 5-hydroxyisourate hydrolase
Pmen_2757
PA1518
5-hydroxyisourate hydrolase
Position: -265
Score: 4.8
Sequence: TTGTACACAA
Position: -84
Score: 4.7
Sequence: TTGTATACAA
Locus tag: Pmen_2758
Name: PA1517
Funciton: putative uricase
Locus tag: Pmen_2759
Name: uraO
Funciton: Urate oxidase (EC 1.7.3.3)
Locus tag: Pmen_2760
Name: allA
Funciton: Ureidoglycolate hydrolase (EC 3.5.3.19)
Locus tag: Pmen_2761
Name: PA1513
Funciton: conserved hypothetical membrane protein, paralogue of Y20848
Pmen_2758
PA1517
putative uricase
Pmen_2759
uraO
Urate oxidase (EC 1.7.3.3)
Pmen_2760
allA
Ureidoglycolate hydrolase (EC 3.5.3.19)
Pmen_2761
PA1513
conserved hypothetical membrane protein, paralogue of Y20848
Position: -306
Score: 4.7
Sequence: TTGTATACAA
Position: -156
Score: 4
Sequence: ATGTATACAA
Locus tag: Pmen_2768
Name: PA1503
Funciton: GlcG protein
Pmen_2768
PA1503
GlcG protein
Position: -478
Score: 4.6
Sequence: TTGTACACAG
Position: -157
Score: 4.7
Sequence: TTGTATACAA
Position: -34
Score: 3.8
Sequence: CGGTACACAA
Locus tag: Pmen_2756
Name: PA1519
Funciton: Xanthine/uracil/thiamine/ascorbate permease family protein
Pmen_2756
PA1519
Xanthine/uracil/thiamine/ascorbate permease family protein
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