Regulog PA1520 - Pseudomonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Xanthine utilization; Allantoin utilization |
| Effector: | |
| Phylum: | Proteobacteria/Gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By TF family - GntR/Others
- By pathway - Xanthine utilization
- By pathway - Allantoin utilization
| Genome | Genes | Operons |
|---|---|---|
| Azotobacter vinelandii AvOP | ||
| Pseudomonas aeruginosa PAO1 | 16 | 10 |
| Pseudomonas entomophila L48 | 17 | 9 |
| Pseudomonas fluorescens Pf-5 | 16 | 8 |
| Pseudomonas mendocina ymp | 16 | 10 |
| Pseudomonas putida KT2440 | 18 | 8 |
| Pseudomonas stutzeri A1501 | 9 | 5 |
| Pseudomonas syringae pv. tomato str. DC3000 | 7 | 3 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| pbuX |
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Gene: PFL_3157: Xanthine permease |
*
Pseudomonas mendocina ymp Site: position = -162 score = 4.83881 sequence = TTGTGCACAA Gene: Pmen_2762: Xanthine permease |
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Xanthine permease |
| Pmen_2763 |
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Gene: Pmen_2763: Nucleoside-binding outer membrane protein |
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Nucleoside-binding outer membrane protein |
| CRON 2. | |||||||||
| Pmen_2764 |
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*
Pseudomonas mendocina ymp Site: position = -20 score = 4.05274 sequence = CTGTATACAC Site: position = -109 score = 4.01064 sequence = TTGTGTGCAA Site: position = -66 score = 4.56882 sequence = CTGTGTACAA Gene: Pmen_2764: Hydantoin permease |
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Hydantoin permease |
| CRON 3. | |||||||||
| PA2938 |
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Pseudomonas aeruginosa PAO1 Site: position = -117 score = 3.92271 sequence = TTGTCTACAG Site: position = -151 score = 4.03972 sequence = TTGTATACAT Gene: PA2938: Xanthine/uracil permease family protein |
*
Pseudomonas entomophila L48 Site: position = -182 score = 4.32272 sequence = TTGTACACAC Site: position = -79 score = 4.72993 sequence = TTGTATACAA Gene: PSEEN0801: Xanthine/uracil permease family protein |
*
Pseudomonas fluorescens Pf-5 Site: position = 12 score = 4.09416 sequence = ATGTGTACAA Gene: PFL_2039: Xanthine/uracil permease family protein |
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Pseudomonas mendocina ymp Site: position = -78 score = 4.03972 sequence = ATGTATACAA Site: position = -44 score = 3.46107 sequence = GTGTCTACAG Gene: Pmen_0163: Xanthine/uracil permease family protein |
*
Pseudomonas putida KT2440 Site: position = -181 score = 4.32272 sequence = TTGTACACAC Site: position = -78 score = 4.72993 sequence = TTGTATACAA Gene: PP4643: Xanthine/uracil permease family protein |
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Xanthine/uracil permease family protein |
| CRON 4. | |||||||||
| PA1520 |
|
*
Pseudomonas aeruginosa PAO1 Site: position = -237 score = 4.72993 sequence = TTGTATACAA Site: position = -101 score = 4.32272 sequence = TTGTGTACAC Gene: PA1520: Transcriptional regulator, GntR family |
*
Pseudomonas entomophila L48 Site: position = -213 score = 4.78437 sequence = TTGTGTACAA Site: position = -114 score = 4.56882 sequence = CTGTGTACAA Gene: PSEEN1760: Transcriptional regulator, GntR family |
*
Pseudomonas fluorescens Pf-5 Site: position = -104 score = 4.78437 sequence = TTGTGTACAA Gene: PFL_1883: Transcriptional regulator, GntR family |
*
Pseudomonas mendocina ymp Site: position = -435 score = 4.72993 sequence = TTGTATACAA Site: position = -114 score = 4.56882 sequence = CTGTGTACAA Gene: Pmen_2755: Transcriptional regulator, GntR family |
*
Pseudomonas putida KT2440 Site: position = -45 score = 4.56882 sequence = CTGTGTACAA Site: position = -144 score = 4.78437 sequence = TTGTGTACAA Gene: PP4283: Transcriptional regulator, GntR family |
*
Pseudomonas stutzeri A1501 Site: position = -225 score = 4.72993 sequence = TTGTATACAA Site: position = -112 score = 4.83881 sequence = TTGTGCACAA Gene: PST_3088: Transcriptional regulator, GntR family |
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -53 score = 4.56882 sequence = CTGTGTACAA Gene: PSPTO3664: Transcriptional regulator, GntR family |
Transcriptional regulator, GntR family |
| CRON 5. | |||||||||
| gcl |
Gene: Avin_43400: Glyoxylate carboligase (EC 4.1.1.47) |
*
Pseudomonas aeruginosa PAO1 Site: position = -259 score = 4.01064 sequence = TTGTACCCAA Site: position = -193 score = 4.03972 sequence = TTGTATACAT Site: position = -36 score = 4.78437 sequence = TTGTACACAA Gene: PA1502: Glyoxylate carboligase (EC 4.1.1.47) |
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Pseudomonas entomophila L48 Site: position = -35 score = 4.72993 sequence = TTGTATACAA Site: position = -175 score = 4.72993 sequence = TTGTATACAA Gene: PSEEN1672: Glyoxylate carboligase (EC 4.1.1.47) |
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Pseudomonas fluorescens Pf-5 Site: position = -175 score = 4.72993 sequence = TTGTATACAA Site: position = -36 score = 4.72993 sequence = TTGTATACAA Gene: PFL_1701: Glyoxylate carboligase (EC 4.1.1.47) |
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Pseudomonas mendocina ymp Site: position = -35 score = 4.72993 sequence = TTGTATACAA Site: position = -185 score = 4.03972 sequence = TTGTATACAT Gene: Pmen_2769: Glyoxylate carboligase (EC 4.1.1.47) |
*
Pseudomonas putida KT2440 Site: position = -35 score = 4.72993 sequence = TTGTATACAA Site: position = -175 score = 4.72993 sequence = TTGTATACAA Gene: PP4297: Glyoxylate carboligase (EC 4.1.1.47) |
Gene: PST_3114: Glyoxylate carboligase (EC 4.1.1.47) |
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Glyoxylate carboligase (EC 4.1.1.47) |
| hyi |
Gene: Avin_43410: Hydroxypyruvate isomerase (EC 5.3.1.22) |
Gene: PA1501: Hydroxypyruvate isomerase (EC 5.3.1.22) |
Gene: PSEEN1671: Hydroxypyruvate isomerase (EC 5.3.1.22) |
Gene: PFL_1700: Hydroxypyruvate isomerase (EC 5.3.1.22) |
Gene: Pmen_2770: Hydroxypyruvate isomerase (EC 5.3.1.22) |
Gene: PP4298: Hydroxypyruvate isomerase (EC 5.3.1.22) |
Gene: PST_3115: Hydroxypyruvate isomerase (EC 5.3.1.22) |
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Hydroxypyruvate isomerase (EC 5.3.1.22) |
| garR |
Gene: Avin_43420: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) |
Gene: PA1500: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) |
Gene: PSEEN1670: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) |
Gene: PFL_1699: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) |
Gene: Pmen_2771: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) |
Gene: PP4299: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) |
Gene: PST_3116: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) |
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2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) |
| CRON 6. | |||||||||
| PA1503 |
|
*
Pseudomonas aeruginosa PAO1 Site: position = -302 score = 4.78437 sequence = TTGTGTACAA Site: position = -145 score = 4.03972 sequence = ATGTATACAA Site: position = -79 score = 4.01064 sequence = TTGGGTACAA Gene: PA1503: GlcG protein |
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Pseudomonas entomophila L48 Site: position = -232 score = 4.72993 sequence = TTGTATACAA Site: position = -92 score = 4.72993 sequence = TTGTATACAA Gene: PSEEN1674: GlcG protein |
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Pseudomonas fluorescens Pf-5 Site: position = -22 score = 4.72993 sequence = TTGTATACAA Site: position = -161 score = 4.72993 sequence = TTGTATACAA Gene: PFL_1702: GlcG protein |
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Pseudomonas mendocina ymp Site: position = -306 score = 4.72993 sequence = TTGTATACAA Site: position = -156 score = 4.03972 sequence = ATGTATACAA Gene: Pmen_2768: GlcG protein |
*2
Pseudomonas putida KT2440 Site: position = -232 score = 4.72993 sequence = TTGTATACAA Site: position = -92 score = 4.72993 sequence = TTGTATACAA Gene: PP4296: GlcG protein Gene: PP3193: GlcG protein |
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GlcG protein |
| CRON 7. | |||||||||
| PA1517 |
Gene: Avin_21130: putative uricase |
*
Pseudomonas aeruginosa PAO1 Site: position = -257 score = 4.72993 sequence = TTGTATACAA Site: position = -75 score = 4.72993 sequence = TTGTATACAA Gene: PA1517: putative uricase |
*
Pseudomonas entomophila L48 Site: position = -292 score = 4.78437 sequence = TTGTACACAA Site: position = -87 score = 4.72993 sequence = TTGTATACAA Gene: PSEEN1685: putative uricase |
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Pseudomonas fluorescens Pf-5 Site: position = -96 score = 4.72993 sequence = TTGTATACAA Site: position = -291 score = 4.78437 sequence = TTGTACACAA Gene: PFL_4366: putative uricase |
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Pseudomonas mendocina ymp Site: position = -84 score = 4.72993 sequence = TTGTATACAA Site: position = -265 score = 4.78437 sequence = TTGTACACAA Gene: Pmen_2758: putative uricase |
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Pseudomonas putida KT2440 Site: position = -86 score = 4.72993 sequence = TTGTATACAA Site: position = -291 score = 4.78437 sequence = TTGTACACAA Gene: PP4286: putative uricase |
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Pseudomonas stutzeri A1501 Site: position = -137 score = 4.56882 sequence = TTGTACACAG Site: position = 0 score = 4.72993 sequence = TTGTATACAA Gene: PST_3093: putative uricase |
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -78 score = 4.72993 sequence = TTGTATACAA Site: position = -272 score = 4.56882 sequence = CTGTACACAA Gene: PSPTO3666: putative uricase |
putative uricase |
| uraO |
Gene: Avin_21120: Urate oxidase (EC 1.7.3.3) |
Gene: PA1516: Urate oxidase (EC 1.7.3.3) |
Gene: PSEEN1684: Urate oxidase (EC 1.7.3.3) |
Gene: PFL_4367: Urate oxidase (EC 1.7.3.3) |
Gene: Pmen_2759: Urate oxidase (EC 1.7.3.3) |
Gene: PP4287: Urate oxidase (EC 1.7.3.3) |
Gene: PST_3094: Urate oxidase (EC 1.7.3.3) |
Gene: PSPTO3667: Urate oxidase (EC 1.7.3.3) |
Urate oxidase (EC 1.7.3.3) |
| allA |
Gene: Avin_21100: Ureidoglycolate hydrolase (EC 3.5.3.19) |
Gene: PA1514: Ureidoglycolate hydrolase (EC 3.5.3.19) |
Gene: PSEEN1683: Ureidoglycolate hydrolase (EC 3.5.3.19) |
Gene: PFL_4369: Ureidoglycolate hydrolase (EC 3.5.3.19) |
Gene: Pmen_2760: Ureidoglycolate hydrolase (EC 3.5.3.19) |
Gene: PP4288: Ureidoglycolate hydrolase (EC 3.5.3.19) |
Gene: PST_3096: Ureidoglycolate hydrolase (EC 3.5.3.19) |
Gene: PSPTO3669: Ureidoglycolate hydrolase (EC 3.5.3.19) |
Ureidoglycolate hydrolase (EC 3.5.3.19) |
| PA1513 |
Gene: Avin_21090: conserved hypothetical membrane protein, paralogue of Y20848 |
Gene: PA1513: conserved hypothetical membrane protein, paralogue of Y20848 |
Gene: PSEEN1682: conserved hypothetical membrane protein, paralogue of Y20848 |
Gene: PFL_4370: conserved hypothetical membrane protein, paralogue of Y20848 |
Gene: Pmen_2761: conserved hypothetical membrane protein, paralogue of Y20848 |
Gene: PP4289: conserved hypothetical membrane protein, paralogue of Y20848 |
Gene: PST_3097: conserved hypothetical membrane protein, paralogue of Y20848 |
Gene: PSPTO3670: conserved hypothetical membrane protein, paralogue of Y20848 |
conserved hypothetical membrane protein, paralogue of Y20848 |
| PA1507 |
|
*
Pseudomonas aeruginosa PAO1 Site: position = -170 score = 4.72993 sequence = TTGTATACAA Gene: PA1507: Xanthine/uracil permease |
Gene: PSEEN1681: Xanthine/uracil permease |
Gene: PFL_4371: Xanthine/uracil permease |
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Gene: PP4290: Xanthine/uracil permease |
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Xanthine/uracil permease |
| PSEEN1680 |
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Gene: PSEEN1680: Nucleoside-binding outer membrane protein |
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Gene: PP4291: Nucleoside-binding outer membrane protein |
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Nucleoside-binding outer membrane protein |
| PP4292 |
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Gene: PP4292: hypothetical protein |
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hypothetical protein |
| PSEEN1679 |
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Pseudomonas entomophila L48 Site: position = -132 score = 4.06508 sequence = TTGTGCCCAA Gene: PSEEN1679: Nucleoside-binding outer membrane protein |
Gene: PFL_4372: Nucleoside-binding outer membrane protein |
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Gene: PP4293: Nucleoside-binding outer membrane protein |
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Nucleoside-binding outer membrane protein |
| alc |
Gene: Avin_21110: Allantoicase (EC 3.5.3.4) |
Gene: PA1515: Allantoicase (EC 3.5.3.4) |
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Gene: PFL_4368: Allantoicase (EC 3.5.3.4) |
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Gene: PST_3095: Allantoicase (EC 3.5.3.4) |
Gene: PSPTO3668: Allantoicase (EC 3.5.3.4) |
Allantoicase (EC 3.5.3.4) |
| CRON 8. | |||||||||
| PA1518 |
Gene: Avin_21140: 5-hydroxyisourate hydrolase |
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Pseudomonas aeruginosa PAO1 Site: position = -307 score = 4.72993 sequence = TTGTATACAA Site: position = -125 score = 4.72993 sequence = TTGTATACAA Gene: PA1518: 5-hydroxyisourate hydrolase |
*
Pseudomonas entomophila L48 Site: position = -323 score = 4.72993 sequence = TTGTATACAA Site: position = -118 score = 4.78437 sequence = TTGTGTACAA Gene: PSEEN1686: 5-hydroxyisourate hydrolase |
*
Pseudomonas fluorescens Pf-5 Site: position = -142 score = 4.78437 sequence = TTGTGTACAA Site: position = -337 score = 4.72993 sequence = TTGTATACAA Gene: PFL_4365: 5-hydroxyisourate hydrolase |
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Pseudomonas mendocina ymp Site: position = -328 score = 4.72993 sequence = TTGTATACAA Site: position = -147 score = 4.78437 sequence = TTGTGTACAA Gene: Pmen_2757: 5-hydroxyisourate hydrolase |
*
Pseudomonas putida KT2440 Site: position = -323 score = 4.72993 sequence = TTGTATACAA Site: position = -118 score = 4.78437 sequence = TTGTGTACAA Gene: PP4285: 5-hydroxyisourate hydrolase |
*
Pseudomonas stutzeri A1501 Site: position = -92 score = 4.56882 sequence = CTGTGTACAA Site: position = -229 score = 4.72993 sequence = TTGTATACAA Gene: PST_3092: 5-hydroxyisourate hydrolase |
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -89 score = 4.56882 sequence = TTGTGTACAG Site: position = -283 score = 4.72993 sequence = TTGTATACAA Gene: PSPTO3665: 5-hydroxyisourate hydrolase |
5-hydroxyisourate hydrolase |
| CRON 9. | |||||||||
| PA0476 |
|
*
Pseudomonas aeruginosa PAO1 Site: position = -68 score = 4.72993 sequence = TTGTATACAA Site: position = -295 score = 4.83881 sequence = TTGTGCACAA Gene: PA0476: Hydantoin permease |
*
Pseudomonas entomophila L48 Site: position = -429 score = 4.09416 sequence = TTGTACACAT Site: position = -167 score = 4.72993 sequence = TTGTATACAA Gene: PSEEN1660: Hydantoin permease |
*
Pseudomonas fluorescens Pf-5 Site: position = -428 score = 4.56882 sequence = CTGTACACAA Site: position = -168 score = 4.72993 sequence = TTGTATACAA Gene: PFL_1853: Hydantoin permease |
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*
Pseudomonas putida KT2440 Site: position = -427 score = 4.78437 sequence = TTGTACACAA Site: position = -166 score = 4.72993 sequence = TTGTATACAA Gene: PP4309: Hydantoin permease |
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Hydantoin permease |
| PSEEN1659 |
|
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Gene: PSEEN1659: Hydantoin racemase (EC 5.1.99.-) |
Gene: PFL_1852: Hydantoin racemase (EC 5.1.99.-) |
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Gene: PP4310: Hydantoin racemase (EC 5.1.99.-) |
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Hydantoin racemase (EC 5.1.99.-) |
| CRON 10. | |||||||||
| PA0165 |
|
*
Pseudomonas aeruginosa PAO1 Site: position = -340 score = 4.78437 sequence = TTGTGTACAA Gene: PA0165: Nucleoside-binding outer membrane protein |
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*
Pseudomonas mendocina ymp Site: position = -113 score = 4.01064 sequence = TTGAACACAA Gene: Pmen_3697: Nucleoside-binding outer membrane protein |
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*
Pseudomonas stutzeri A1501 Site: position = -398 score = 4.83881 sequence = TTGTGCACAA Gene: PST_3099: Nucleoside-binding outer membrane protein |
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Nucleoside-binding outer membrane protein |
| CRON 11. | |||||||||
| PA1519 |
|
*
Pseudomonas aeruginosa PAO1 Site: position = -283 score = 4.32272 sequence = GTGTACACAA Site: position = -147 score = 4.72993 sequence = TTGTATACAA Gene: PA1519: Xanthine/uracil/thiamine/ascorbate permease family protein |
*
Pseudomonas entomophila L48 Site: position = -153 score = 4.78437 sequence = TTGTACACAA Site: position = -252 score = 4.56882 sequence = TTGTACACAG Gene: PSEEN1759: Xanthine/uracil/thiamine/ascorbate permease family protein |
*
Pseudomonas fluorescens Pf-5 Site: position = -146 score = 4.72993 sequence = TTGTATACAA Gene: PFL_4364: Xanthine/uracil/thiamine/ascorbate permease family protein |
*
Pseudomonas mendocina ymp Site: position = -34 score = 3.79509 sequence = CGGTACACAA Site: position = -478 score = 4.56882 sequence = TTGTACACAG Site: position = -157 score = 4.72993 sequence = TTGTATACAA Gene: Pmen_2756: Xanthine/uracil/thiamine/ascorbate permease family protein |
*
Pseudomonas putida KT2440 Site: position = -146 score = 4.78437 sequence = TTGTACACAA Site: position = -245 score = 4.56882 sequence = TTGTACACAG Gene: PP4284: Xanthine/uracil/thiamine/ascorbate permease family protein |
*
Pseudomonas stutzeri A1501 Site: position = -94 score = 4.72993 sequence = TTGTATACAA Site: position = -207 score = 4.83881 sequence = TTGTGCACAA Gene: PST_3090: Xanthine/uracil/thiamine/ascorbate permease family protein |
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Xanthine/uracil/thiamine/ascorbate permease family protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |