Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of PhrR in Pseudomonas mendocina ymp

Properties
Regulator type: Transcription factor
TF locus tag: Pmen_1072
Regulator family: MerR
Regulation mode: repressor
Biological process: Light-dependent DNA repair
Effector: Blue light; Adenosylcobalamin
Regulog: PhrR - Pseudomonadaceae
Statistics of regulated genes:
- Genes 19
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 43 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -75
Score: 5.9
Sequence: TGTACATGAAAACATTCTTGTATA
Locus tag: Pmen_1075
Name: COG3380
Funciton: Predicted NAD/FAD-dependent oxidoreductase
Locus tag: Pmen_1074
Name: PF09493
Funciton: Tryptophan-rich protein (DUF2389)
Pmen_1075
COG3380
Predicted NAD/FAD-dependent oxidoreductase
Pmen_1074
PF09493
Tryptophan-rich protein (DUF2389)
Position: -131
Score: 6.1
Sequence: TATACAAGAATGTTTTCATGTACA
Locus tag: Pmen_1076
Name: COG1090
Funciton: Predicted nucleoside-diphosphate sugar epimerase
Locus tag: Pmen_1077
Name: hemH
Funciton: Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1)
Pmen_1076
COG1090
Predicted nucleoside-diphosphate sugar epimerase
Pmen_1077
hemH
Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1)
Position: -94
Score: 5.6
Sequence: TATACAAACAGGAATTCATGTACA
Locus tag: Pmen_1353
Name: mcp1
Funciton: Methyl-accepting chemotaxis protein
Pmen_1353
mcp1
Methyl-accepting chemotaxis protein
Position: -251
Score: 5.6
Sequence: TGTACAAAACACATGGATCGTACA
Position: -118
Score: 4.6
Sequence: TGTACAACCCGCAGCTCTGGTATA
Locus tag: Pmen_3288
Name: folM
Funciton: FolM Alternative dihydrofolate reductase 1
Locus tag: Pmen_3289
Name: folE
Funciton: GTP cyclohydrolase I (EC 3.5.4.16) type 1
Locus tag: Pmen_3290
Name: folB
Funciton: Dihydroneopterin triphosphate epimerase
Locus tag: Pmen_3291
Name: PF06844
Funciton: protein of unknown function DUF1244
Locus tag: Pmen_3292
Name: PF08888
Funciton: HopJ type III effector protein
Pmen_3288
folM
FolM Alternative dihydrofolate reductase 1
Pmen_3289
folE
GTP cyclohydrolase I (EC 3.5.4.16) type 1
Pmen_3290
folB
Dihydroneopterin triphosphate epimerase
Pmen_3291
PF06844
protein of unknown function DUF1244
Pmen_3292
PF08888
HopJ type III effector protein
Position: -92
Score: 6.4
Sequence: TGTACAAATCATTTGACTTGTACA
Position: -42
Score: 5.2
Sequence: TGTACATGCACCAACATATGTACA
Locus tag: Pmen_1073
Name: COG3272
Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: Pmen_1072
Name: phrR
Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: Pmen_1071
Name: phr
Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: Pmen_1070
Name: PF07366
Funciton: Protein of unknown function DUF1486
Locus tag: Pmen_1069
Name: PF00106
Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
Locus tag: Pmen_1068
Name: PF01593
Funciton: Flavin containing amine oxidoreductase
Locus tag: Pmen_1067
Name: PF07103
Funciton: Protein of unknown function DUF1365
Locus tag: Pmen_1066
Name: PF02353
Funciton: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
Locus tag: Pmen_1065
Name: PF11086
Funciton: Protein of unknown function DUF2878
Pmen_1073
COG3272
COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Pmen_1072
phrR
Transcriptional regulator, MerR family, associated with photolyase
Pmen_1071
phr
Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Pmen_1070
PF07366
Protein of unknown function DUF1486
Pmen_1069
PF00106
Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
Pmen_1068
PF01593
Flavin containing amine oxidoreductase
Pmen_1067
PF07103
Protein of unknown function DUF1365
Pmen_1066
PF02353
S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
Pmen_1065
PF11086
Protein of unknown function DUF2878
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