Regulon of PhnR in Pseudomonas mendocina ymp

Properties
Regulator type:	Transcription factor
TF locus tag:	Pmen_1333
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	Phosphonate utilization; 2-aminoethylphosphonate utilization
Effector:
Regulog:	PhnR - Pseudomonadaceae
Statistics of regulated genes:
- Genes	8
- Operons	3
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 30 sites [see more]

Member of regulog collections

By trascription factor - PhnR
By taxonomy - Pseudomonadaceae
By TF family - GntR/Others
By pathway - Phosphonate utilization
By pathway - 2-aminoethylphosphonate utilization

Regulated operons
	Locus Tag	Name	Function
Position: -289 Score: 4.7 Sequence: TGGTCTAGATCA Position: -27 Score: 5.3 Sequence: TGGACTAGTCCA Locus tag: Pmen_1333 Name: phnR Funciton: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family
	Pmen_1333	phnR	2-aminoethylphosphonate uptake and metabolism regulator, GntR family
Position: -300 Score: 5.3 Sequence: TGGACTAGTCCA Position: -38 Score: 5.4 Sequence: TGATCTAGACCA Locus tag: Pmen_1332 Name: phnS Funciton: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1) Locus tag: Pmen_1331 Name: PF01663 Funciton: type I phosphodiesterase Locus tag: Pmen_1330 Name: phnU Funciton: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1) Locus tag: Pmen_1329 Name: phnV Funciton: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1) Locus tag: Pmen_1328 Name: phnT Funciton: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1) Locus tag: Pmen_1327 Name: COG0560 Funciton: Phosphoserine phosphatase (EC 3.1.3.3)
	Pmen_1332	phnS	2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)
	Pmen_1331	PF01663	type I phosphodiesterase
	Pmen_1330	phnU	2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1)
	Pmen_1329	phnV	2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1)
	Pmen_1328	phnT	2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)
	Pmen_1327	COG0560	Phosphoserine phosphatase (EC 3.1.3.3)
Position: -29 Score: 4.8 Sequence: TGGACTAGGCCA Locus tag: Pmen_1925 Name: phnX Funciton: Phosphonoacetaldehyde hydrolase (EC 3.11.1.1)
	Pmen_1925	phnX	Phosphonoacetaldehyde hydrolase (EC 3.11.1.1)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD