Regulog PhnR - Pseudomonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Phosphonate utilization; 2-aminoethylphosphonate utilization |
| Effector: | |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - PhnR
- By taxonomy - Pseudomonadaceae
- By TF family - GntR/Others
- By pathway - Phosphonate utilization
- By pathway - 2-aminoethylphosphonate utilization
| Genome | Genes | Operons |
|---|---|---|
| Pseudomonas aeruginosa PAO1 | 14 | 6 |
| Pseudomonas entomophila L48 | 7 | 2 |
| Pseudomonas putida KT2440 | 7 | 2 |
| Pseudomonas syringae pv. tomato str. DC3000 | 7 | 2 |
| Pseudomonas fluorescens Pf-5 | 7 | 2 |
| Pseudomonas mendocina ymp | 8 | 3 |
| Pseudomonas stutzeri A1501 | ||
| Azotobacter vinelandii AvOP |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| phnS |
*
Pseudomonas aeruginosa PAO1 Site: position = -348 score = 5.34652 sequence = TGGTCTAGTCCA Site: position = -93 score = 5.41372 sequence = TGATCTAGACCA Gene: PA3250: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1) |
*
Pseudomonas entomophila L48 Site: position = -310 score = 5.30308 sequence = TGGACTAGTCCA Site: position = -76 score = 5.31593 sequence = TGACCTAGACCA Gene: PSEEN1438: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1) |
*
Pseudomonas putida KT2440 Site: position = -311 score = 5.30308 sequence = TGGACTAGTCCA Site: position = -88 score = 5.31593 sequence = TGACCTAGACCA Gene: PP1726: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1) |
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -345 score = 5.37028 sequence = TGGACTAGACCA Site: position = -65 score = 5.41372 sequence = TGATCTAGACCA Gene: PSPTO3878: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1) |
*
Pseudomonas fluorescens Pf-5 Site: position = -348 score = 5.37028 sequence = TGGACTAGACCA Site: position = -69 score = 5.31593 sequence = TGACCTAGACCA Gene: PFL_4387: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1) |
*
Pseudomonas mendocina ymp Site: position = -300 score = 5.30308 sequence = TGGACTAGTCCA Site: position = -38 score = 5.41372 sequence = TGATCTAGACCA Gene: Pmen_1332: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1) |
|
|
2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1) |
| PF01663 |
Gene: PA3251: type I phosphodiesterase |
Gene: PSEEN1437: type I phosphodiesterase |
Gene: PP1725: type I phosphodiesterase |
Gene: PSPTO3879: type I phosphodiesterase |
Gene: PFL_4388: type I phosphodiesterase |
Gene: Pmen_1331: type I phosphodiesterase |
|
|
type I phosphodiesterase |
| phnU |
Gene: PA3252: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1) |
Gene: PSEEN1436: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1) |
Gene: PP1724: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1) |
Gene: PSPTO3880: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1) |
Gene: PFL_4389: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1) |
Gene: Pmen_1330: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1) |
|
|
2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1) |
| phnV |
Gene: PA3253: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1) |
Gene: PSEEN1435: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1) |
Gene: PP1723: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1) |
Gene: PSPTO3881: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1) |
Gene: PFL_4390: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1) |
Gene: Pmen_1329: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1) |
|
|
2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1) |
| phnT |
Gene: PA3254: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1) |
Gene: PSEEN1434: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1) |
Gene: PP1722: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1) |
Gene: PSPTO3882: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1) |
Gene: PFL_4391: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1) |
Gene: Pmen_1328: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1) |
|
|
2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1) |
| COG0560 |
*3
Pseudomonas aeruginosa PAO1 Gene: PA1143: Phosphoserine phosphatase (EC 3.1.3.3) Site: position = -50 score = 4.67873 sequence = TGGACGAGACCA Gene: PA3255: Phosphoserine phosphatase (EC 3.1.3.3) Gene: PA3255: Phosphoserine phosphatase (EC 3.1.3.3) |
Gene: PSEEN1433: Phosphoserine phosphatase (EC 3.1.3.3) |
Gene: PP1721: Phosphoserine phosphatase (EC 3.1.3.3) |
Gene: PSPTO3883: Phosphoserine phosphatase (EC 3.1.3.3) |
Gene: PFL_4392: Phosphoserine phosphatase (EC 3.1.3.3) |
Gene: Pmen_1327: Phosphoserine phosphatase (EC 3.1.3.3) |
|
|
Phosphoserine phosphatase (EC 3.1.3.3) |
| PA1144 |
*
Pseudomonas aeruginosa PAO1 Site: position = -263 score = 5.41372 sequence = TGGTCTAGACCA Site: position = -84 score = 5.31593 sequence = TGGCCTAGACCA Gene: PA1144: probable MFS transporter |
|
|
|
|
|
|
|
probable MFS transporter |
| phnR2 |
Gene: PA1142: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family |
|
|
|
|
|
|
|
2-aminoethylphosphonate uptake and metabolism regulator, GntR family |
| CRON 2. | |||||||||
| phnX |
*2
Pseudomonas aeruginosa PAO1 Site: position = -31 score = 5.31593 sequence = TGGCCTAGACCA Gene: PA2803: Phosphonoacetaldehyde hydrolase (EC 3.11.1.1) Gene: PA1311: Phosphonoacetaldehyde hydrolase (EC 3.11.1.1) |
Gene: PSEEN3554: Phosphonoacetaldehyde hydrolase (EC 3.11.1.1) |
Gene: PP2208: Phosphonoacetaldehyde hydrolase (EC 3.11.1.1) |
Gene: PSPTO2114: Phosphonoacetaldehyde hydrolase (EC 3.11.1.1) |
2
Pseudomonas fluorescens Pf-5 Gene: PFL_3966: Phosphonoacetaldehyde hydrolase (EC 3.11.1.1) Gene: PFL_1969: Phosphonoacetaldehyde hydrolase (EC 3.11.1.1) |
*
Pseudomonas mendocina ymp Site: position = -29 score = 4.78952 sequence = TGGACTAGGCCA Gene: Pmen_1925: Phosphonoacetaldehyde hydrolase (EC 3.11.1.1) |
|
|
Phosphonoacetaldehyde hydrolase (EC 3.11.1.1) |
| COG4341 |
Gene: PA2804: COG4341: Predicted HD phosphohydrolase |
|
|
|
|
|
|
|
COG4341: Predicted HD phosphohydrolase |
| CRON 3. | |||||||||
| phnR3 |
*
Pseudomonas aeruginosa PAO1 Site: position = -114 score = 4.83296 sequence = TGGTCTAGGCCA Gene: PA2802: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family |
|
|
|
|
|
|
|
2-aminoethylphosphonate uptake and metabolism regulator, GntR family |
| CRON 4. | |||||||||
| phnR |
*
Pseudomonas aeruginosa PAO1 Site: position = -27 score = 5.37028 sequence = TGGACTAGACCA Site: position = -282 score = 4.72217 sequence = TGGTCTAGATCA Gene: PA3249: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family |
*
Pseudomonas entomophila L48 Site: position = -261 score = 4.14141 sequence = TGGTCTAGGTCA Site: position = -27 score = 5.30308 sequence = TGGACTAGTCCA Gene: PSEEN1439: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family |
*
Pseudomonas putida KT2440 Site: position = -28 score = 5.30308 sequence = TGGACTAGTCCA Site: position = -251 score = 4.14141 sequence = TGGTCTAGGTCA Gene: PP1727: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family |
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -304 score = 4.72217 sequence = TGGTCTAGATCA Site: position = -24 score = 5.34652 sequence = TGGTCTAGTCCA Gene: PSPTO3877: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family |
*
Pseudomonas fluorescens Pf-5 Site: position = -305 score = 4.14141 sequence = TGGTCTAGGTCA Site: position = -26 score = 5.34652 sequence = TGGTCTAGTCCA Gene: PFL_4386: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family |
*
Pseudomonas mendocina ymp Site: position = -289 score = 4.72217 sequence = TGGTCTAGATCA Site: position = -27 score = 5.30308 sequence = TGGACTAGTCCA Gene: Pmen_1333: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family |
|
|
2-aminoethylphosphonate uptake and metabolism regulator, GntR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |