Regulon of PhnR in Pseudomonas fluorescens Pf-5
| Regulator type: | Transcription factor |
| TF locus tag: | PFL_4386 |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Phosphonate utilization; 2-aminoethylphosphonate utilization |
| Effector: | |
| Regulog: | PhnR - Pseudomonadaceae |
| Statistics of regulated genes: | |
| - Genes | 7 |
| - Operons | 2 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - PhnR
- By taxonomy - Pseudomonadaceae
- By TF family - GntR/Others
- By pathway - Phosphonate utilization
- By pathway - 2-aminoethylphosphonate utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -305
Score: 4.1 Sequence: TGGTCTAGGTCA
Position: -26
Score: 5.3 Sequence: TGGTCTAGTCCA
Locus tag: PFL_4386
Name: phnR Funciton: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family |
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phnR
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2-aminoethylphosphonate uptake and metabolism regulator, GntR family
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Position: -348
Score: 5.4 Sequence: TGGACTAGACCA
Position: -69
Score: 5.3 Sequence: TGACCTAGACCA
Locus tag: PFL_4387
Name: phnS Funciton: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)
Locus tag: PFL_4388
Name: PF01663 Funciton: type I phosphodiesterase
Locus tag: PFL_4389
Name: phnU Funciton: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1)
Locus tag: PFL_4390
Name: phnV Funciton: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1)
Locus tag: PFL_4391
Name: phnT Funciton: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)
Locus tag: PFL_4392
Name: COG0560 Funciton: Phosphoserine phosphatase (EC 3.1.3.3) |
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phnS
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2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)
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PF01663
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type I phosphodiesterase
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phnU
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2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1)
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phnV
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2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1)
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phnT
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2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)
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COG0560
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Phosphoserine phosphatase (EC 3.1.3.3)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |