Regulon of RutR in Pseudomonas mendocina ymp
| Regulator type: | Transcription factor |
| TF locus tag: | Pmen_3699 |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Pyrimidine utilization |
| Effector: | Uracil |
| Regulog: | RutR - Pseudomonadaceae |
| Statistics of regulated genes: | |
| - Genes | 12 |
| - Operons | 5 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - RutR
- By taxonomy - Pseudomonadaceae
- By TF family - TetR
- By effector - Uracil
- By pathway - Pyrimidine utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -92
Score: 5.4 Sequence: AGCTGATCAGTTGGACAGCT
Position: -54
Score: 5.7 Sequence: ACCTGACCACACGGCCAGGA
Locus tag: Pmen_3697
Name: tsx3 Funciton: Nucleoside-binding outer membrane protein
Locus tag: Pmen_3698
Name: pbuT Funciton: Xanthine/uracil permease
Locus tag: Pmen_3699
Name: rutR Funciton: Transcriptional regulator RutR of pyrimidine catabolism, TetR family
Locus tag: Pmen_3700
Name: COG1739 Funciton: hypothetical protein, COG1739 |
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tsx3
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Nucleoside-binding outer membrane protein
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pbuT
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Xanthine/uracil permease
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rutR
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Transcriptional regulator RutR of pyrimidine catabolism, TetR family
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COG1739
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hypothetical protein, COG1739
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Position: -166
Score: 5.8 Sequence: TGCTGACCACTCAGGCAATT
Locus tag: Pmen_2758
Name: COG0726 Funciton: putative polysaccharide deacetylase family protein
Locus tag: Pmen_2759
Name: pucL Funciton: Uricase (EC 1.7.3.3)
Locus tag: Pmen_2760
Name: allA Funciton: Ureidoglycolate hydrolase (EC 3.5.3.19)
Locus tag: Pmen_2761
Name: COG3748 Funciton: hypothetical protein, COG3748 |
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COG0726
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putative polysaccharide deacetylase family protein
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pucL
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Uricase (EC 1.7.3.3)
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allA
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Ureidoglycolate hydrolase (EC 3.5.3.19)
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COG3748
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hypothetical protein, COG3748
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Position: -36
Score: 5.6 Sequence: GCCTGACCAATCGGACAACA
Locus tag: Pmen_4444
Name: pbuT4 Funciton: Xanthine/uracil permease |
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pbuT4
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Xanthine/uracil permease
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Position: -100
Score: 5.5 Sequence: TTCTGACCGACCAGACAGCT
Locus tag: Pmen_2762
Name: pbuT2 Funciton: Xanthine/uracil permease
Locus tag: Pmen_2763
Name: tsx Funciton: Nucleoside-binding outer membrane protein |
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pbuT2
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Xanthine/uracil permease
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tsx
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Nucleoside-binding outer membrane protein
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Position: -123
Score: 4.8 Sequence: TCTTGACCGCTCGGTCAACA
Locus tag: Pmen_2756
Name: pbuT3 Funciton: Xanthine/uracil permease |
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pbuT3
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Xanthine/uracil permease
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |