Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of RutR in Pseudomonas mendocina ymp

Properties
Regulator type: Transcription factor
TF locus tag: Pmen_3699
Regulator family: TetR
Regulation mode: repressor
Biological process: Pyrimidine utilization
Effector: Uracil
Regulog: RutR - Pseudomonadaceae
Statistics of regulated genes:
- Genes 12
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 29 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -92
Score: 5.4
Sequence: AGCTGATCAGTTGGACAGCT
Position: -54
Score: 5.7
Sequence: ACCTGACCACACGGCCAGGA
Locus tag: Pmen_3697
Name: tsx3
Funciton: Nucleoside-binding outer membrane protein
Locus tag: Pmen_3698
Name: pbuT
Funciton: Xanthine/uracil permease
Locus tag: Pmen_3699
Name: rutR
Funciton: Transcriptional regulator RutR of pyrimidine catabolism, TetR family
Locus tag: Pmen_3700
Name: COG1739
Funciton: hypothetical protein, COG1739
tsx3
Nucleoside-binding outer membrane protein
pbuT
Xanthine/uracil permease
rutR
Transcriptional regulator RutR of pyrimidine catabolism, TetR family
COG1739
hypothetical protein, COG1739

Position: -166
Score: 5.8
Sequence: TGCTGACCACTCAGGCAATT
Locus tag: Pmen_2758
Name: COG0726
Funciton: putative polysaccharide deacetylase family protein
Locus tag: Pmen_2759
Name: pucL
Funciton: Uricase (EC 1.7.3.3)
Locus tag: Pmen_2760
Name: allA
Funciton: Ureidoglycolate hydrolase (EC 3.5.3.19)
Locus tag: Pmen_2761
Name: COG3748
Funciton: hypothetical protein, COG3748
COG0726
putative polysaccharide deacetylase family protein
pucL
Uricase (EC 1.7.3.3)
allA
Ureidoglycolate hydrolase (EC 3.5.3.19)
COG3748
hypothetical protein, COG3748

Position: -36
Score: 5.6
Sequence: GCCTGACCAATCGGACAACA
Locus tag: Pmen_4444
Name: pbuT4
Funciton: Xanthine/uracil permease
pbuT4
Xanthine/uracil permease

Position: -100
Score: 5.5
Sequence: TTCTGACCGACCAGACAGCT
Locus tag: Pmen_2762
Name: pbuT2
Funciton: Xanthine/uracil permease
Locus tag: Pmen_2763
Name: tsx
Funciton: Nucleoside-binding outer membrane protein
pbuT2
Xanthine/uracil permease
tsx
Nucleoside-binding outer membrane protein

Position: -123
Score: 4.8
Sequence: TCTTGACCGCTCGGTCAACA
Locus tag: Pmen_2756
Name: pbuT3
Funciton: Xanthine/uracil permease
pbuT3
Xanthine/uracil permease
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