Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Cobalamin in Pseudomonas mendocina ymp

Properties
Regulator type: RNA regulatory element
Name: Cobalamin
RFAM: RF00174
Regulation mode:
Biological process: Cobalamin biosynthesis
Effector: Adenosylcobalamin
Regulog: Cobalamin - Pseudomonadaceae
Under regulation:
- Genes 25
- Operons 6
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -290
Score: 82.6
Sequence: CATTCATGTTCCGCC...
Locus tag: Pmen_3845
Name: btuB1
Funciton: Outer membrane vitamin B12 receptor BtuB
Pmen_3845
btuB1
Outer membrane vitamin B12 receptor BtuB
Position: -394
Score: 97.3
Sequence: CTGCGCGCCTTGCTT...
Locus tag: Pmen_1750
Name: btuR
Funciton: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
Locus tag: Pmen_1751
Name: cbiA
Funciton: Cobyrinic acid A,C-diamide synthase
Locus tag: Pmen_1752
Name: bluB
Funciton: Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family
Locus tag: Pmen_1753
Name: cbiB
Funciton: Adenosylcobinamide-phosphate synthase
Locus tag: Pmen_1754
Name: cobD
Funciton: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
Locus tag: Pmen_1755
Name: cbiP
Funciton: Cobyric acid synthase
Locus tag: Pmen_1756
Name: cobU
Funciton: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
Locus tag: Pmen_1757
Name: cobT
Funciton: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
Locus tag: Pmen_1758
Name: cobC
Funciton: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)
Locus tag: Pmen_1759
Name: cobS
Funciton: Cobalamin synthase
Pmen_1750
btuR
Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
Pmen_1751
cbiA
Cobyrinic acid A,C-diamide synthase
Pmen_1752
bluB
Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family
Pmen_1753
cbiB
Adenosylcobinamide-phosphate synthase
Pmen_1754
cobD
L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
Pmen_1755
cbiP
Cobyric acid synthase
Pmen_1756
cobU
Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
Pmen_1757
cobT
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
Pmen_1758
cobC
Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)
Pmen_1759
cobS
Cobalamin synthase
Position: -184
Score: 99.8
Sequence: GCCTTCGCGGGAGTG...
Locus tag: Pmen_4571
Name: cobG
Funciton: Cobalamin biosynthesis protein CobG
Locus tag: Pmen_4572
Name: cbiC
Funciton: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
Locus tag: Pmen_4573
Name: cbiL
Funciton: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
Locus tag: Pmen_4574
Name: cbiGH
Funciton: Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-3b C17-methyltransferase
Pmen_4571
cobG
Cobalamin biosynthesis protein CobG
Pmen_4572
cbiC
Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
Pmen_4573
cbiL
Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
Pmen_4574
cbiGH
Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-3b C17-methyltransferase
Position: -291
Score: 113.1
Sequence: GTAGCCTTCTCGCTT...
Locus tag: Pmen_4587
Name: null
Funciton: CobW GTPase involved in cobalt insertion for B12 biosynthesis
Locus tag: Pmen_4586
Name: cobN
Funciton: CobN component of cobalt chelatase involved in B12 biosynthesis
Locus tag: Pmen_4585
Name: chII
Funciton: ChlI component of cobalt chelatase involved in B12 biosynthesis
Locus tag: Pmen_4584
Name: chlD
Funciton: ChlD component of cobalt chelatase involved in B12 biosynthesis
Locus tag: Pmen_4583
Name: cbiL
Funciton: Precorrin-6A synthase (EC 2.1.1.152)
Pmen_4587
CobW GTPase involved in cobalt insertion for B12 biosynthesis
Pmen_4586
cobN
CobN component of cobalt chelatase involved in B12 biosynthesis
Pmen_4585
chII
ChlI component of cobalt chelatase involved in B12 biosynthesis
Pmen_4584
chlD
ChlD component of cobalt chelatase involved in B12 biosynthesis
Pmen_4583
cbiL
Precorrin-6A synthase (EC 2.1.1.152)
Position: -394
Score: 118.9
Sequence: TCATATCCGCCCCGC...
Locus tag: Pmen_4567
Name: btuB
Funciton: Outer membrane vitamin B12 receptor BtuB
Locus tag: Pmen_4566
Name: btuD
Funciton: Vitamin B12 ABC transporter, ATPase component BtuD
Locus tag: Pmen_4565
Name: btuF
Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF
Locus tag: Pmen_4564
Name: btuC
Funciton: Vitamin B12 ABC transporter, permease component BtuC
Pmen_4567
btuB
Outer membrane vitamin B12 receptor BtuB
Pmen_4566
btuD
Vitamin B12 ABC transporter, ATPase component BtuD
Pmen_4565
btuF
Vitamin B12 ABC transporter, B12-binding component BtuF
Pmen_4564
btuC
Vitamin B12 ABC transporter, permease component BtuC
Position: -258
Score: 125.1
Sequence: GAGTAAGGTTGCCGC...
Locus tag: Pmen_3752
Name: cbtC
Funciton: Predicted cobalt transporter CbtC
Pmen_3752
cbtC
Predicted cobalt transporter CbtC
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