Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Sinorhizobium meliloti 1021

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF AduR Adenosine Adenosine utilization 2 1
TF AfrR 1,5-Anhydro-d-Fructose utilization 2 4
TF AglR Alpha-glucoside; Maltose; Trehalose; Sucrose Alpha-glucosides utilization 2 3
TF Atu2740 Sugar utilization 3 3
TF CadR-PbrR Lead ion, (Pb2+); Cadmium, ion (Cd2+) Lead resistance; Cadmium resistance 2 1
TF CueR Copper ion, (Cu+) Copper resistance 5 5
TF EutR Ethanolamine Ethanolamine utilization 2 4
TF EutR Ectoine utilization 3 4
TF FixJ Oxygen Oxidative stress response; Nitrogen fixation 4 2
TF FixJ Oxygen Oxidative stress response 5 4
TF FnrN/FixK/AadR Oxygen Oxidative stress response; Nitrogen fixation 21 11
TF GlcC Glycolate Glycolate utilization 5 5
TF HrcA Heat shock Heat shock response 3 2
TF HutC cis-Urocanic acid Histidine utilization 8 9
TF HypR Proline Proline and 4-hydrohyproline utilization 6 5
TF Irr Heme Iron homeostasis 20 10
TF KglR Sugar utilization 2 1
TF LexA DNA damage SOS response 23 19
TF LiuR Branched-chain amino acid degradation 10 14
TF MdcY Malonate metabolism 2 2
TF MerR Mercury ion, (Hg2+) Mercury resistance 1 1
TF Mll0059 3 3
TF MocR rhizopine Rhizopine catabolism 2 2
TF ModE Molybdate Molybdenum homeostasis 1 1
TF Mur Iron ion, (Fe2+) Manganese homeostasis 1 1
TF NadQ NAD biosynthesis 1 1
TF NagQ N-acetylglucosamine N-acetylglucosamine utilization 4 2
TF NifA Nitrogen fixation 11 4
TF NnrR Nitric oxide Denitrification 14 14
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 1 3
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 10 6
TF PckR Central carbohydrate metabolism 16 13
TF PhnF Phosphonate utilization 5 2
TF PsiR Psicose Psicose utilization 2 4
TF RhaR Rhamnose Rhamnose utilization 2 6
TF RirA Iron ion, (Fe2+) Iron homeostasis 26 28
TF RutR Uracil Pyrimidine utilization 8 6
TF SMb20014 Sugar utilization 1 1
TF SMb20039 1 1
TF SMb20537 Sugar utilization 2 2
TF SMb20667 Sugar utilization 2 4
TF SMb20717 Sugar utilization 2 4
TF SMb21598 Sugar utilization 2 2
TF SMb21706 Sugar utilization 1 2
TF SMc04260 Sugar utilization 3 2
TF SahR S-adenosylhomocysteine Methionine metabolism 6 5
TF SmoR Mannitol; Sorbitol Sorbitol utilization; Mannitol utilization 1 1
TF SoxR Paraquat Superoxide stress response 6 4
TF TauR Taurine Taurine utilization 1 1
TF ThuR Trehalose Trehalose utilization 2 3
TF UxuR2 Galacturonate utilization 3 1
TF XylR Xylose Xylose utilization 3 2
TF XylR Xylose Xylose utilization 2 1
TF YrdX2 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 4 3
TF pRL90265 Sugar utilization 3 6
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 9 4
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA Glycine Glycine Glycine metabolism 1 2
RNA SAM_alpha S-adenosylmethionine Methionine biosynthesis 2 2
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 3 3
RNA serC Serine biosynthesis 1 1
RNA speF Ornithine degradation 1 1
RNA ybhL 1 1
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