Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LexA in Sinorhizobium meliloti 1021

Properties
Regulator type: Transcription factor
TF locus tag: SMc01183
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Rhizobiales
Statistics of regulated genes:
- Genes 23
- Operons 17
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 212 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -36
Score: 1.8
Sequence: GAACATAACATGAAC
Locus tag: SMc03790
Name: imuA
Funciton: Predicted RecA/RadA recombinase
Locus tag: SMc03789
Name: imuB
Funciton: DNA polymerase-like protein PA0670
Locus tag: SMc03788
Name: dnaE2
Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7)
SMc03790
imuA
Predicted RecA/RadA recombinase
SMc03789
imuB
DNA polymerase-like protein PA0670
SMc03788
dnaE2
DNA polymerase III alpha subunit (EC 2.7.7.7)
Position: -35
Score: 5.5
Sequence: GTTCTTGATTTGTTT
Locus tag: SMc01183
Name: lexA
Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
SMc01183
lexA
SOS-response repressor and protease LexA (EC 3.4.21.88)
Position: -143
Score: 5.6
Sequence: GTTCTTTTTTTGTTC
Locus tag: SMc01235
Name: uvrA
Funciton: Excinuclease ABC subunit A
SMc01235
uvrA
Excinuclease ABC subunit A
Position: -79
Score: 5.7
Sequence: GTTCTTGATTTGTTC
Locus tag: SMc00866
Name: PF04055
Funciton: Radical SAM domain protein
SMc00866
PF04055
Radical SAM domain protein
Position: -58
Score: 0.3
Sequence: GAATAAAAGAAGAAC
Locus tag: SMc01461
Name: uvrD
Funciton: ATP-dependent DNA helicase II
SMc01461
uvrD
ATP-dependent DNA helicase II
Position: -273
Score: 0.5
Sequence: GAACAAAAAGGGAAC
Locus tag: SMc01375
Name: dnaE
Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7)
SMc01375
dnaE
DNA polymerase III alpha subunit (EC 2.7.7.7)
Position: -61
Score: 0.7
Sequence: GAACAAATACAGAAC
Locus tag: SMa0888
Name: imuA
Funciton: Predicted RecA/RadA recombinase
Locus tag: SMa0890
Name: imuB
Funciton: DNA polymerase-like protein PA0670
Locus tag: SMa0892
Name: dnaE2
Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7)
SMa0888
imuA
Predicted RecA/RadA recombinase
SMa0890
imuB
DNA polymerase-like protein PA0670
SMa0892
dnaE2
DNA polymerase III alpha subunit (EC 2.7.7.7)
Position: -141
Score: 2
Sequence: GAACAAGAATCGAAC
Position: -73
Score: 1.9
Sequence: GAACAAAACATGTAC
Locus tag: SMc00760
Name: recA
Funciton: Recombinase A
SMc00760
recA
Recombinase A
Position: -59
Score: 4.3
Sequence: GTTCCCCCTCCGTTC
Locus tag: SMa2321
Name: uvrD2
Funciton: ATP-dependent DNA helicase II
SMa2321
uvrD2
ATP-dependent DNA helicase II
Position: -132
Score: 4.6
Sequence: ATTCGCCTTTTGTTC
Locus tag: SMc01018
Name: parE
Funciton: Topoisomerase IV subunit B (EC 5.99.1.-)
SMc01018
parE
Topoisomerase IV subunit B (EC 5.99.1.-)
Position: -60
Score: 4.5
Sequence: GTTTCCCTTTTGTAC
Locus tag: SMc04231
Name: uvrB
Funciton: Excinuclease ABC subunit B
SMc04231
uvrB
Excinuclease ABC subunit B
Position: -36
Score: 5.3
Sequence: GTTCCTGTTTTGTTT
Locus tag: SMc02819
Name: rna
Funciton: Ribonuclease T2
SMc02819
rna
Ribonuclease T2
Position: -20
Score: 5
Sequence: GTTCAACATTTGTTC
Position: -9
Score: 4.6
Sequence: GTTCCGGATATGATC
Locus tag: SMc01373
Name: dinP
Funciton: DNA polymerase IV (EC 2.7.7.7)
SMc01373
dinP
DNA polymerase IV (EC 2.7.7.7)
Position: -58
Score: 5.4
Sequence: GTTTTTGTTTTGTTC
Locus tag: SMc03967
Name: ruvC
Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Locus tag: SMc03966
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: SMc03965
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
SMc03967
ruvC
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
SMc03966
ruvA
Holliday junction DNA helicase RuvA
SMc03965
ruvB
Holliday junction DNA helicase RuvB
Position: -153
Score: 4.7
Sequence: GTTCTATCATTGTTC
Locus tag: SMc00420
Name: yifB
Funciton: Conserved hypothetical protein
SMc00420
yifB
Conserved hypothetical protein
Position: -49
Score: 5.2
Sequence: GTTCTCGTTTTGATC
Locus tag: SMc01102
Name: rmuC
Funciton: DNA recombination protein RmuC
SMc01102
rmuC
DNA recombination protein RmuC
Position: -158
Score: 0.8
Sequence: GAACAAAAAAAGAAC
Locus tag: SMc01233
Name: ssb
Funciton: Single-stranded DNA-binding protein
SMc01233
ssb
Single-stranded DNA-binding protein
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