Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of PckR in Sinorhizobium meliloti 1021

Properties
Regulator type: Transcription factor
TF locus tag: SMc02975
Regulator family: LacI
Regulation mode: repressor
Biological process: Central carbohydrate metabolism
Effector:
Regulog: PckR - Rhizobiales
Statistics of regulated genes:
- Genes 22
- Operons 11
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 99 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -55
Score: 5.5
Sequence: ATTTTAAATCGATTAGATTA
Locus tag: SMc03070
Name: zwf
Funciton: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Locus tag: SMc03069
Name: pgl
Funciton: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Locus tag: SMc03068
Name: edd
Funciton: Phosphogluconate dehydratase (EC 4.2.1.12)
SMc03070
zwf
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
SMc03069
pgl
6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
SMc03068
edd
Phosphogluconate dehydratase (EC 4.2.1.12)
Position: -129
Score: 4.7
Sequence: GATTATAATCGATTAGAGTT
Locus tag: SMc04006
Name: COG5480
Funciton: Predicted integral membrane protein
Locus tag: SMc04005
Name: pykA
Funciton: Pyruvate kinase (EC 2.7.1.40)
SMc04006
COG5480
Predicted integral membrane protein
SMc04005
pykA
Pyruvate kinase (EC 2.7.1.40)
Position: -120
Score: 4.7
Sequence: AACTCTAATCGATTATAATC
Locus tag: SMc04007
Name: COG3931
Funciton: Predicted N-formylglutamate amidohydrolase
Locus tag: SMc04008
Name: COG3492
Funciton: hypothetical protein
SMc04007
COG3931
Predicted N-formylglutamate amidohydrolase
SMc04008
COG3492
hypothetical protein
Position: -59
Score: 4.2
Sequence: TAATTTAAACAGTTTAAAGG
Locus tag: SMc02975
Name: pckR
Funciton: Transcriptional regulator of phosphoenolpyruvate carboxykinase, LacI family
Locus tag: SMc04462
Name: hpr
Funciton: Glyoxylate reductase (EC 1.1.1.79) / Hydroxypyruvate reductase (EC 1.1.1.81)
SMc02975
pckR
Transcriptional regulator of phosphoenolpyruvate carboxykinase, LacI family
SMc04462
hpr
Glyoxylate reductase (EC 1.1.1.79) / Hydroxypyruvate reductase (EC 1.1.1.81)
Position: -160
Score: 5
Sequence: CCGTCAAATCGATTAAATTG
Locus tag: SMc02463
Name: sdhC
Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: SMc02464
Name: sdhD
Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein
Locus tag: SMc02465
Name: sdhA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: SMc02466
Name: sdhB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
SMc02463
sdhC
Succinate dehydrogenase cytochrome b-556 subunit
SMc02464
sdhD
Succinate dehydrogenase hydrophobic membrane anchor protein
SMc02465
sdhA
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
SMc02466
sdhB
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Position: -86
Score: 5.3
Sequence: CCTTCAAATCGATTTAAACG
Locus tag: SMc02834
Name: mgsA
Funciton: Methylglyoxal synthase (EC 4.2.3.3)
Locus tag: SMc02835
Name: glk
Funciton: Glucokinase (EC 2.7.1.2)
SMc02834
mgsA
Methylglyoxal synthase (EC 4.2.3.3)
SMc02835
glk
Glucokinase (EC 2.7.1.2)
Position: -30
Score: 5.4
Sequence: TTATTCAATCGTTTTAAAAG
Locus tag: SMc03153
Name: eda
Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) / 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16)
SMc03153
eda
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) / 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16)
Position: -140
Score: 5
Sequence: CGATCTAACCGATTGAAATT
Locus tag: SMc02479
Name: mdh
Funciton: Malate dehydrogenase (EC 1.1.1.37)
Locus tag: SMc02480
Name: sucC
Funciton: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Locus tag: SMc02481
Name: sucD
Funciton: Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
SMc02479
mdh
Malate dehydrogenase (EC 1.1.1.37)
SMc02480
sucC
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
SMc02481
sucD
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
Position: -157
Score: 5.1
Sequence: CGATTCAACCGATTAAAAAA
Position: -127
Score: 5.3
Sequence: TCTTTAAATCGATTAATATA
Locus tag: SMc02562
Name: pckA
Funciton: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
SMc02562
pckA
Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
Position: -203
Score: 4.7
Sequence: CGAATAAATCGGTTGAATCA
Locus tag: SMc02495
Name: null
Funciton: Transaldolase (EC 2.2.1.2)
SMc02495
Transaldolase (EC 2.2.1.2)
Position: -181
Score: 5.5
Sequence: CTTTTCAAACGATTAAAATT
Position: -162
Score: 4.9
Sequence: TATTTAAATCGTTTTAGCCC
Locus tag: SMc03983
Name: fba
Funciton: Fructose-bisphosphate aldolase class I (EC 4.1.2.13)
SMc03983
fba
Fructose-bisphosphate aldolase class I (EC 4.1.2.13)
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