# TF - NadQ: SMc02565 123769 SMc02601 nadA 123770 SMc02599 nadB 123771 SMc02598 nadC # TF - NrdR: SMc01771 124230 SMc01237 nrdJ # TF - SahR: SMc01842 124875 SMc01842 sahR 124874 SMc01843 metF 122714 SMc02755 ahcY 123086 SMc01109 metK 124646 SMc04325 bhmT 125656 SMc03112 metH # TF - Zur: SMc04242 125857 SMc03799 yciC 124590 SMc04245 znuA2 124589 SMc04244 znuC2 124588 SMc04243 znuB2 124587 SMc04242 zur # TF - NnrR: SMa1245 122006 SMa1261 PF00034 122005 SMa1259 null 122004 SMa1256 PF10006 122003 SMa1255 PF01883 121997 SMa1245 nnrR 121996 SMa1243 azu1 121999 SMa1250 nirK 121998 SMa1247 nirV 122000 SMa1252 nnrS 122014 SMa1279 norE 122018 SMa1289 nnrX 122019 SMa1291 PF01136 122020 SMa1292 PF01136 122021 SMa1294 null 122017 SMa1288 ubiD 122016 SMa1285 ubiX 121959 SMa1178 PF02915 121960 SMa1179 nosR 121961 SMa1182 nosZ 121962 SMa1183 nosD 121963 SMa1184 nosF 121964 SMa1185 nosY 121965 SMa1186 nosL 121966 SMa1188 nosX 121967 SMa1191 hmp 121970 SMa1195 dnrN 121969 SMa1194 nnrS2 122009 SMa1266 hemN 122013 SMa1276 norC 122012 SMa1273 norB 122011 SMa1272 norQ 122010 SMa1269 norD # TF - HutC: SMa0402, SMc00674, SMb20048 125374 SMc00673 hutF 125375 SMc00672 hutX 125376 SMc00671 hutW 125377 SMc00670 hutV 125378 SMc00669 hutH2 125379 SMc00668 COG3314 125380 SMc00667 hutD 125373 SMc00674 hutC 121526 SMa0391 COG3842 (PotA) 121527 SMa0392 COG687 (PotD) 121528 SMa0394 COG1176 (PotB) 121529 SMa0396 COG1177 (PotC) 121530 SMa0398 hisD 121531 SMa0400 COG1063 (Tdh) 121532 SMa0402 hutC 121533 SMa0403 SMa0403 121525 SMa0389 COG1028 (FabG) 121524 SMa0387 hisC # TF - HypR: SMb20258 131566 SMb20261 hypS 131565 SMb20260 hypT 131568 SMb20263 hypM 131569 SMb20264 hypN 131570 SMb20265 hypP 131571 SMb20266 hypQ 131572 SMb20267 hypO 131573 SMb20268 hypE 131574 SMb20269 hypX 131575 SMb20270 hypY 131576 SMb20271 hypZ 131563 SMb20258 hypR 131564 SMb20259 hypD 131567 SMb20262 hypH # TF - RirA: SMc00785 122282 SMa1749 araX1 122889 SMc02889 rhtX2 122890 SMc02890 viuA 122583 SMa2414 rhtA 122584 SMa2339 vbsA 122280 SMa1746 fepB 122279 SMa1745 fepD 122278 SMa1742 fepG 122277 SMa1741 fepC 122276 SMa1740 mxcB 122582 SMa2412 rhrA 122575 SMa2337 rhtX 122576 SMa2400 rhbA 122577 SMa2402 rhbB 122578 SMa2404 rhbC 122579 SMa2406 rhbD 122580 SMa2408 rhbE 122581 SMa2410 rhbF 123836 SMc00592 PF00501 124411 SMc00529 sufS2 124410 SMc00530 sufB 124409 SMc00531 sufC 124408 SMc00532 sufD 124407 SMc00533 sufS 124406 SMc00302 PF01883 124405 SMc00301 sufA 132575 SMb21432 irp6A 132574 SMb21431 irp6A 132573 SMb21430 irp6B 132572 SMb21429 irp6C 124706 SMc04203 fecI 124707 SMc04204 fecR 125063 SMc02726 shmR 124186 SMc02085 exbB 124187 SMc02084 exbD 124944 SMc01657 fhuA2 124945 SMc01658 fhuF 124946 SMc01659 PF01497 125102 SMc01747 hmuP 125103 SMc01513 hmuS 125104 SMc01512 hmuT 125105 SMc01511 hmuU 125106 SMc01510 hmuV 123404 SMc00784 fbpA 125064 SMc02727 PF06904 123651 SMc00045 cycF 123652 SMc00086 cycG 125845 SMc03787 bfd 125844 SMc03786 bfr 123405 SMc00785 rirA 124898 SMc01611 fhuA1 125101 SMc01514 null 125100 SMc01515 tonB 125099 SMc01516 PF10087 125098 SMc01517 null 125097 SMc01518 PF03992 124708 SMc04205 hmuR 122281 SMa1747 fhuA3 # TF - Irr: SMc00329 122997 SMc00402 iprA 125845 SMc03787 bfd 125844 SMc03786 bfr 123076 SMc01119 fssA 124411 SMc00529 sufS2 124410 SMc00530 sufB 124409 SMc00531 sufC 124408 SMc00532 sufD 124407 SMc00533 sufS1 124406 SMc00302 PF01883 124405 SMc00301 sufA 122954 SMc00359 mbfA 123405 SMc00785 rirA 125664 SMc03104 hemA 123404 SMc00784 fbpA 125478 SMc04019 hemH 132575 SMb21432 irp6A 132574 SMb21431 irp6A 132573 SMb21430 irp6B 132572 SMb21429 irp6C # TF - NagQ: SMc02876 122874 SMc02874 murQ 122873 SMc02873 nagT 122872 SMc02872 nagU 122871 SMc02871 nagV 122870 SMc02870 nagD 122869 SMc02869 nagW 122875 SMc02875 nagK 122876 SMc02876 nagQ 122877 SMc02877 nagB2 122878 SMc02878 nagA # TF - GlcC: SMc00829 123450 SMc00830 mlr6914 123451 SMc00831 lysR 132458 SMb20850 lldD 123449 SMc00829 glcC 123452 SMc00832 glcD 123453 SMc00833 glcE 123454 SMc00926 glcF # TF - NtrC: SMc01043 131737 SMb20436 narK 124314 SMc00947 glnB 124315 SMc00948 glnA 124132 SMc01041 nifR3 124133 SMc01042 ntrB 124134 SMc01043 ntrC 125864 SMc03806 glnK 125865 SMc03807 amtB # TF - Mur: SMc02510 125701 SMc02509 sitA 125702 SMc02508 sitB 125703 SMc02507 sitC 125704 SMc02506 sitD # TF - ModE: SMc03199 125602 SMc03196 modA 125603 SMc03197 modB 125604 SMc03198 modC # TF - LexA: SMc01183 125848 SMc03790 imuA 125847 SMc03789 imuB 125846 SMc03788 dnaE2 124285 SMc01183 lexA 124232 SMc01235 uvrA 123515 SMc00866 PF04055 124819 SMc01461 uvrD 123964 SMc01375 dnaE 121805 SMa0888 imuA 121806 SMa0890 imuB 121807 SMa0892 dnaE2 124474 SMc00760 recA 122567 SMa2321 uvrD2 124108 SMc01018 parE 124576 SMc04231 uvrB 124877 SMc02819 rna 123966 SMc01373 dinP 125426 SMc03967 ruvC 125425 SMc03966 ruvA 125424 SMc03965 ruvB 123014 SMc00420 yifB 123093 SMc01102 rmuC 124233 SMc01233 ssb # TF - LiuR: SMc01260 123180 SMc02150 PF03060 123550 SMc00977 acdH2 123551 SMc00976 echH 123640 SMc00041 SMc00041 123209 SMc02229 acdH 123208 SMc02228 acdA 123207 SMc02227 acdB 125731 SMc02479 mdh 125730 SMc02480 sucC 125729 SMc02481 sucD 125728 SMc02482 sucA 125727 SMc02483 sucB 125318 SMc00729 etfB 125319 SMc00728 etfA 125320 SMc00727 hbdA 123722 SMc02391 PF09917 123159 SMc02162 fadD 123708 SMc02377 etfD 124079 SMc01260 liuR1 # TF - XylR: SMb20901 132512 SMb20901 xylR 132513 SMb20902 xylF 132514 SMb20903 xylH 132515 SMb20904 xylG # TF - RutR: SMc01819 122595 SMa2361 pytM 122596 SMa2363 pytH 122597 SMa2365 pytN 122598 SMa2367 pytO 122599 SMa2369 pytQ 122600 SMa2371 codA 125122 SMc01814 pydX 125123 SMc01815 pydA 122884 SMc02884 pntD 122800 SMc04127 pntA 122801 SMc04126 pntB 122802 SMc04125 pntC 122803 SMc04124 cdd 122804 SMc04123 deoD 122805 SMc04122 deoA 125127 SMc01819 rutR 125128 SMc01820 pydC 125129 SMc01821 pydB # TF - PhnF: SM_b20758 132766 SMb20759 phnG 132767 SMb20760 phnH 132768 SMb20761 phnI 132769 SMb20762 phnJ 132770 SMb20763 phnK 132771 SMb20764 phnL 132772 SMb20765 phnO 132765 SM_b20758 phnF # RNA - Cobalamin 131371 SMb20056 btuF 131372 SMb20057 btuC 131373 SMb20058 btuD 124516 SMc00166 bluB 131850 SM_b20556 cbtC 123545 SMc00982 ardX 123546 SMc00981 frdX # RNA - FMN 124896 SMc01609 ribH2 # RNA - TPP 125927 SMc03869 thiB 125928 SMc03870 thiP 125929 SMc03871 thiQ 132842 SMb20615 thiC 132843 SMb20616 thiO 132844 SMb20617 thiG 132845 SMb20618 thiE 132402 SMb20962 thiD # RNA - serC 125406 SMc00640 serC 125405 SMc00641 serA # RNA - speF 125550 SMc02983 speF # RNA - Glycine 124224 SMc02047 gcvT 124223 SMc02048 gcvH 124222 SMc02049 gcvP # RNA - SAM_alpha 125855 SMc03797 metA 123197 SMc02217 metY # RNA - ybhL 125897 SMc03839 ybhL # TF - RhaR: SMc02323 123303 SMc02322 rhaEW 123302 SMc02321 rhaI 123304 SMc02323 rhaR 123305 SMc02324 rhaF 123306 SMc02325 rhaG 123307 SMc03000 rhaH 123308 SMc03001 rhaJ 123309 SMc03002 rhaM 123310 SMc03003 rhaK # TF - NifA: SMa0815 121760 SMa0814 nifB 121759 SMa0811 fdxN 121758 SMa0810 nifT 121765 SMa0822 fixB 121764 SMa0819 fixA 121763 SMa0817 fixC 121762 SMa0816 fixX 121795 SMa0872 orf110 121796 SMa0873 nifN 121767 SMa0825 nifH 121768 SMa0827 nifD 121769 SMa0829 nifK 121770 SMa0830 nifE # TF - EutR: SMc01602 124891 SMc01602 eutR 124890 SMc01600 eutA 124889 SMc01597 eutT 124888 SMc01594 eutB 124887 SMc01588 eutX 124886 SMc01582 eutY # TF - AglR: SMc03060 123370 SMc03061 aglE 123371 SMc03062 aglF 123372 SMc03063 aglG 123373 SMc03064 aglA 123374 SMc03065 aglK 123369 SMc03060 aglR # TF - ThuR: SMb20324 131625 SMb20324 thuR 131626 SMb20325 thuE 131627 SMb20326 thuF 131628 SMb20327 thuG 131629 SMb20328 thuK 131630 SMb20329 thuA 131631 SMb20330 thuB # TF - PckR: SMc02975 123379 SMc03070 zwf 123378 SMc03069 pgl 123377 SMc03068 edd 125465 SMc04006 COG5480 125464 SMc04005 pykA 125466 SMc04007 COG3931 125467 SMc04008 COG3492 125542 SMc02975 pckR 125541 SMc04462 hpr 125747 SMc02463 sdhC 125746 SMc02464 sdhD 125745 SMc02465 sdhA 125744 SMc02466 sdhB 122833 SMc02834 mgsA 122834 SMc02835 glk 125559 SMc03153 eda 125731 SMc02479 mdh 125730 SMc02480 sucC 125729 SMc02481 sucD 122720 SMc02562 pckA 125715 SMc02495 null 125442 SMc03983 fba # TF - HrcA: SMc01143 121714 SMa0745 groS 121713 SMa0744 groL 123468 SMc00912 groS 123467 SMc00913 groL # TF - PsiR: SMb20483 131781 SMb20484 psiA 131782 SMb20485 psiB 131783 SMb20486 psiC 131784 SMb20487 psiD 131785 SMb20488 psiE 131786 SMb20489 psiK 131787 SMb20490 fucA2 131780 SMb20483 psiR # TF - SMb20537: SMb20537 131832 SMb20538 SMb20538 131831 SMb20537 SMb20537 131830 SMb20536 COG4289 131829 SMb20535 COG0111 131828 SMb20534 COG1082 # TF - SMb20667: SMb20667 132690 SMb20668 ygbJ 132691 SMb20669 ygbM 132692 SMb20670 ygbK 132689 SMb20667 SMb20667 132688 SMb20666 ygbL # TF - MocR: SMb20817 131873 SM_b20818 mocD 131874 SMb20819 mocE 131875 SMb20820 mocF 131872 SMb20817 mocR # TF - SmoR: SMb21372 132270 SMb21377 null 132269 SMb21376 null 132268 SMb21375 null 132267 SMb21374 fruK 132266 SMb21373 agaZ 132265 SMb21372 smoR # TF - SoxR: SMc00182 124498 SMc00183 PF03358 125673 SMc03095 null 124249 SMc01217 PF07690 124499 SMc00182 soxR # TF - CueR: SMb21579, SMa1014 132333 SMb21578 copA 132334 SMb21579 cueR 121866 SMa1013 copA 121867 SMa1014 cueR 123258 SMc02279 PF11162 123259 SMc02280 null 123260 SMc02281 copB 123261 SMc02282 cueO 123262 SMc02283 copC 123263 SMc02284 cusF 121863 SMa1009 copZ 131854 SMb20560 copZ # TF - MerR: SMa0281 121468 SMa0280 grxC # TF - CadR-PbrR: SMc00109 122799 SMc04128 cadA # TF - AduR: SMb21272 132091 SMb21272 aduR 132092 SMb21273 aduA 132093 SMb21274 aduB 132094 SMb21275 aduC # TF - SMb21598: SMb21598 132353 SMb21598 SMb21598 132352 SMb21597 COG0673 132351 SMb21596 COG1082 132350 SMb21595 SMb21595 132349 SMb21594 SMb21594 132348 SMb21593 SMb21593 132347 SMb21592 SMb21592 # TF - SMb21706: SMb21706 132862 SMb21706 SMb21706 132861 SMb20634 SMb20634 132860 SMb20633 SMb20633 132859 SMb20632 SMb20632 132858 SMb20631 PF07944 132857 SMb20630 SMb20630 # TF - SMc04260: SMc04260 124605 SMc04260 SMc04260 124604 SMc04259 SMc04259 124603 SMc04258 SMc04258 124602 SMc04257 SMc04257 124601 SMc04256 SMc04256 124600 SMc04255 manB 124599 SMc04254 COG1082 124598 SMc04253 COG0673 # TF - SMb20717: SMb20717 132739 SMb20717 SMb20717 132740 SMb20718 SMb20718 132741 SMb20719 SMb20719 132742 SMb20720 SMb20720 # TF - Atu2740: SMa0246 121446 SMa0241 Atu2738 121445 SMa0237 Atu2737 121444 SMa0235 Atu2736 121447 SMa0244 Atu2739 121448 SMa0246 Atu2740 121449 SMa0247 Atu2741 121450 SMa0249 Atu2742 121451 SMa0250 Atu2743 121452 SMa0252 Atu2744 # TF - SMb20014: SMb20014 131336 SMb20018 SMc20018 131335 SMb20017 SMc20017 131334 SMb20016 SMb20016 131333 SMb20015 SMb20015 131332 SMb20014 SMb20014 131331 SMb20013 SMb0013 # TF - KglR: SMa0078 121357 SMa0079 Sma0079 121358 SMa0081 Sma0081 121359 SMa0082 Sma0082 121360 SMa0083 Sma0083 121361 SMa0085 PF00389 121362 SMa0087 null # TF - AfrR: SMc04401 125981 SMc04401 afrR 125980 SMc04400 afr 125979 SMc04399 ydiF 125978 SMc04398 crt 125977 SMc04397 aldh 125976 SMc04396 null 125975 SMc04395 null 125974 SMc04394 null 125973 SMc04393 null 125972 SMc04392 null 125971 SMc04391 fabG 125982 SMc04402 PF06187 # TF - XylR: SMc03165 125571 SMc03165 xylR 125570 SMc03164 xylB 125569 SMc03163 xylA # TF - pRL90265: SMb20154 131470 SMb20155 SMb20155 131471 SMb20156 SMb20156 131472 SMb20157 SMb20158 131473 SMb20158 SMb20158 131474 SMb20159 PF00459 131469 SMb20154 pRL90265 131465 SMb20150 PF00459 131466 SMb20151 SSF52799 131467 SMb20152 PF00149 131468 SMb20153 COG1283 # TF - TauR: SMb21525 132280 SMb21526 tauA 132281 SMb21527 tauB 132282 SMb21528 tauC 132283 SM_b21670 tauX 132284 SMb21529 tauY 132285 SMb21530 xsc 132286 SMb21531 tauZ 132287 SMb21532 pta # TF - SMb20039: SMb20039 131358 SMb20040 COG697 # TF - Mll0059: SMc00490 125443 SMc03984 phzF 124452 SMc00490 Mll0059 124451 SMc00491 PF06568 # TF - UxuR2: SMb20441 131738 SMb20441 uxuR2 131739 SMb20442 dctP 131740 SMb20443 dctQ 131741 SMb20444 dctM 131742 SMb20445 idnD2 131743 SMb20446 uxuA # TF - MdcY: SMa0160 121401 SMa0157 matP 121400 SMa0155 matQ 121399 SMa0151 matM 121398 SMa0150 matA 121402 SMa0160 mdcY # TF - FnrN/FixK/AadR: SMa1225, SMa1141, SMa0762, SMa0662 122022 SMa1296 adhA 123579 SMc00009 ctaC 123580 SMc00010 ctaD 123581 SMc00450 ctaB 123582 SMc00130 ctaX 123583 SMc00012 ctaG 123584 SMc00013 ctaE 121923 SMa1118 hspC2 121995 SMa1241 napE 121994 SMa1240 napF 121993 SMa1239 napD 121992 SMa1236 napA 121991 SMa1233 napB 121990 SMa1232 napC 125664 SMc03104 hemA 121960 SMa1179 nosR 121961 SMa1182 nosZ 121962 SMa1183 nosD 121963 SMa1184 nosF 121964 SMa1185 nosY 121965 SMa1186 nosL 121966 SMa1188 nosX 121983 SMa1220 ccoN 121982 SMa1216 ccoO 121981 SMa1214 ccoQ 121980 SMa1213 ccoP 121999 SMa1250 nirK 121998 SMa1247 nirV 121996 SMa1243 paz 121979 SMa1211 ccoG 121978 SMa1210 ccoH 121977 SMa1209 ccoI 121976 SMa1208 ccoS # TF - FixJ: SMa1138, SMa1139 121935 SMa1141 fixKf 121936 SMa1142 fixLf 121934 SMa1139 fixJf 121933 SMa1138 fixJf # TF - YrdX2: SMc01406 124759 SMc01488 COG5349 # TF - EutR: SMb20426 131726 SMb20425 doeX 131725 SMb20424 doeC 131724 SMb20423 doeD 131723 SMb20422 COG604 (Qor) 131727 SMb20426 EutR 131728 SMb20427 ehuA 131729 SMb20428 ehuB 131730 SMb20429 ehuC 131731 SMb20430 ehuD 131732 SMb20431 eutA 131733 SMb20432 eutB 131734 SMb20433 eutC 131735 SMb20434 eutD 131736 SMb20435 eutE # TF - FixJ: SMa1229 121985 SMa1225 fixK 121726 SMa0762 fixK 121761 SMa0815 nifA 125782 SMc03253 SMc03253