Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LiuR in Sinorhizobium meliloti 1021

Properties
Regulator type: Transcription factor
TF locus tag: SMc01260
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuR - Rhizobiales
Statistics of regulated genes:
- Genes 19
- Operons 10
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 84 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -45
Score: 5.4
Sequence: TTTGACGTTTACGAGAAC
Position: -39
Score: 4.7
Sequence: GTTTACGAGAACGTCAAA
Locus tag: SMc02150
Name: PF03060
Funciton: Dioxygenases related to 2-nitropropane dioxygenase
SMc02150
PF03060
Dioxygenases related to 2-nitropropane dioxygenase
Position: -73
Score: 5.9
Sequence: GTTGACGTTCACGTAAAA
Locus tag: SMc00977
Name: acdH2
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: SMc00976
Name: echH
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
SMc00977
acdH2
Acyl-CoA dehydrogenase (EC 1.3.99.3)
SMc00976
echH
Enoyl-CoA hydratase (EC 4.2.1.17)
Position: -44
Score: 5
Sequence: ATTTACCTTGACGTTAAC
Position: -38
Score: 5.4
Sequence: CTTGACGTTAACGTCAAA
Locus tag: SMc00041
Name: SMc00041
Funciton: hypothetical protein
SMc00041
SMc00041
hypothetical protein
Position: -135
Score: 6.3
Sequence: TTTGACGTTTACGCAAAC
Position: -129
Score: 4.6
Sequence: GTTTACGCAAACGTCAAA
Locus tag: SMc02229
Name: acdH
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: SMc02228
Name: acdA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: SMc02227
Name: acdB
Funciton: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
SMc02229
acdH
Acyl-CoA dehydrogenase (EC 1.3.99.3)
SMc02228
acdA
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
SMc02227
acdB
Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Position: -164
Score: 6
Sequence: TCTTACGTTTACGTAAGA
Locus tag: SMc02479
Name: mdh
Funciton: Malate dehydrogenase (EC 1.1.1.37)
Locus tag: SMc02480
Name: sucC
Funciton: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Locus tag: SMc02481
Name: sucD
Funciton: Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
Locus tag: SMc02482
Name: sucA
Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: SMc02483
Name: sucB
Funciton: Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
SMc02479
mdh
Malate dehydrogenase (EC 1.1.1.37)
SMc02480
sucC
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
SMc02481
sucD
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
SMc02482
sucA
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
SMc02483
sucB
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
Position: -187
Score: 5.7
Sequence: TTTTACCTGTACGTAAAC
Locus tag: SMc00729
Name: etfB
Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: SMc00728
Name: etfA
Funciton: Electron transfer flavoprotein, alpha subunit
Locus tag: SMc00727
Name: hbdA
Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
SMc00729
etfB
Electron transfer flavoprotein, beta subunit
SMc00728
etfA
Electron transfer flavoprotein, alpha subunit
SMc00727
hbdA
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
Position: -148
Score: 5.2
Sequence: ATTTACCTTTACGTACGC
Locus tag: SMc02391
Name: PF09917
Funciton: Protein of unknown function, PF09917
SMc02391
PF09917
Protein of unknown function, PF09917
Position: -147
Score: 6.1
Sequence: GTTGACGTTTACGTCAAA
Locus tag: SMc02162
Name: fadD
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
SMc02162
fadD
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -163
Score: 5.3
Sequence: GTTTACGTTTACGTTCAG
Position: -157
Score: 4.6
Sequence: GTTTACGTTCAGGTAACA
Locus tag: SMc02377
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
SMc02377
etfD
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Position: -58
Score: 5.6
Sequence: TTTGACTTTTACGTCAAA
Locus tag: SMc01260
Name: liuR1
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
SMc01260
liuR1
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
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