# TF - NadQ: SMc02565
>SMc02601(nadA) Score=6.7 Pos=-58 [Sinorhizobium meliloti 1021]
TTATGCTCAGATTGAGCATAA
# TF - NrdR: SMc01771
>SMc01237(nrdJ) Score=4.5 Pos=-130 [Sinorhizobium meliloti 1021]
TCACAAGATACAGGAT
>SMc01237(nrdJ) Score=4.8 Pos=-407 [Sinorhizobium meliloti 1021]
ACACAAGATATAGCGC
>SMc01237(nrdJ) Score=5.5 Pos=-161 [Sinorhizobium meliloti 1021]
ATACTATATTTAGTGT
# TF - SahR: SMc01842
>SMc02755(ahcY) Score=6.1 Pos=-145 [Sinorhizobium meliloti 1021]
ATATAAAGACCTCTTTATAT
>SMc01842(sahR) Score=6.8 Pos=-36 [Sinorhizobium meliloti 1021]
ACATAAACATATCTTTATGT
>SMc03112(metH) Score=6.9 Pos=-66 [Sinorhizobium meliloti 1021]
ACATAAAGATATCTTTATGT
>SMc04325(bhmT) Score=7.1 Pos=-53 [Sinorhizobium meliloti 1021]
ACATAAAGATATCTTTATAT
>SMc01109(metK) Score=6.6 Pos=-94 [Sinorhizobium meliloti 1021]
ATATAAAGATATATTTATGT
# TF - Zur: SMc04242
>SMc04244(znuC2) Score=5.6 Pos=-114 [Sinorhizobium meliloti 1021]
GCGTTGTTATGTTATTACATCAA
>SMc03799(yciC) Score=5.3 Pos=-101 [Sinorhizobium meliloti 1021]
GCTATGTTACGTTATTACGTTTA
>SMc04245(znuA2) Score=5.5 Pos=-86 [Sinorhizobium meliloti 1021]
TTGATGTAATAACATAACAACGC
# TF - NnrR: SMa1245
>SMa1261(PF00034) Score=4.7 Pos=-84 [Sinorhizobium meliloti 1021]
GTTTGCTCCCCGTCAAAG
>SMa1250(nirK) Score=4.7 Pos=-191 [Sinorhizobium meliloti 1021]
CTTTGACAATTGGCAAAG
>SMa1250(nirK) Score=4.8 Pos=-90 [Sinorhizobium meliloti 1021]
GTTTGTTCCACCTCAAAG
>SMa1243(azu1) Score=4.2 Pos=-91 [Sinorhizobium meliloti 1021]
ATTTGACAAGCATCAAAG
>SMa1252(nnrS) Score=4.8 Pos=-173 [Sinorhizobium meliloti 1021]
CTTTGAGGTGGAACAAAC
>SMa1252(nnrS) Score=4.7 Pos=-72 [Sinorhizobium meliloti 1021]
CTTTGCCAATTGTCAAAG
>SMa1279(norE) Score=4.9 Pos=-57 [Sinorhizobium meliloti 1021]
CTTTGATCGAGAGCAAAG
>SMa1289(nnrX) Score=5.1 Pos=-88 [Sinorhizobium meliloti 1021]
CTTTGCTCCAGCGCAAAT
>SMa1288(ubiD) Score=5.1 Pos=-107 [Sinorhizobium meliloti 1021]
ATTTGCGCTGGAGCAAAG
>SMa1178(PF02915) Score=4.7 Pos=-107 [Sinorhizobium meliloti 1021]
CTTTGCGCCAGATCAACT
>SMa1179(nosR) Score=4.7 Pos=-82 [Sinorhizobium meliloti 1021]
AGTTGATCTGGCGCAAAG
>SMa1195(dnrN) Score=5.4 Pos=-141 [Sinorhizobium meliloti 1021]
GTTTGCGCAAGCGCAAAG
>SMa1266(hemN) Score=5.1 Pos=-85 [Sinorhizobium meliloti 1021]
CTTTGACATTGCGCAAAG
>SMa1276(norC) Score=4.9 Pos=-145 [Sinorhizobium meliloti 1021]
GTTTGCCGAAACGCAAAG
# TF - HutC: SMa0402, SMc00674, SMb20048
>SMc00673(hutF) Score=4.4 Pos=-36 [Sinorhizobium meliloti 1021]
TAGTTCCATATACAACCA
>SMa0389(COG1028 (FabG)) Score=4.1 Pos=-77 [Sinorhizobium meliloti 1021]
ATGATCTGTATATATGTA
>SMc00674(hutC) Score=4.4 Pos=-110 [Sinorhizobium meliloti 1021]
TGGTTGTATATGGAACTA
>SMa0389(COG1028 (FabG)) Score=5.6 Pos=-67 [Sinorhizobium meliloti 1021]
TATATGTATAGACATGTT
>SMa0391(COG3842 (PotA)) Score=5.4 Pos=-110 [Sinorhizobium meliloti 1021]
AATATGTATAGACAACTA
>SMa0387(hisC) Score=4.1 Pos=-71 [Sinorhizobium meliloti 1021]
TACATATATACAGATCAT
>SMa0389(COG1028 (FabG)) Score=3.9 Pos=-75 [Sinorhizobium meliloti 1021]
GATCTGTATATATGTATA
>SMa0387(hisC) Score=3.9 Pos=-73 [Sinorhizobium meliloti 1021]
TATACATATATACAGATC
>SMa0387(hisC) Score=5.6 Pos=-81 [Sinorhizobium meliloti 1021]
AACATGTCTATACATATA
# TF - HypR: SMb20258
>SMb20261(hypS) Score=3.8 Pos=-71 [Sinorhizobium meliloti 1021]
GTTTGTATACTCTA
>SMb20258(hypR) Score=5.3 Pos=-24 [Sinorhizobium meliloti 1021]
TTTTGTCGACAAGA
>SMb20259(hypD) Score=5.1 Pos=-108 [Sinorhizobium meliloti 1021]
TTTTGTCGACAAAT
>SMb20263(hypM) Score=4.5 Pos=-101 [Sinorhizobium meliloti 1021]
TTTTGTATACTAAT
>SMb20262(hypH) Score=3.8 Pos=-185 [Sinorhizobium meliloti 1021]
TAGAGTATACAAAC
# TF - RirA: SMc00785
>SMa1747(fhuA3) Score=4.1 Pos=-102 [Sinorhizobium meliloti 1021]
GTTGAGCGAAGCTTTCATG
>SMa1749(araX1) Score=4 Pos=-116 [Sinorhizobium meliloti 1021]
AATGAGAATACGAGTCAAC
>SMc00045(cycF) Score=4.6 Pos=-182 [Sinorhizobium meliloti 1021]
GATGAGTTCTATATTCATA
>SMc04203(fecI) Score=4.8 Pos=-170 [Sinorhizobium meliloti 1021]
CATGATTATCTCAATCAAC
>SMc01657(fhuA2) Score=5.4 Pos=-93 [Sinorhizobium meliloti 1021]
CATGACTTAAAAAGTCATG
>SMc01657(fhuA2) Score=3.9 Pos=-50 [Sinorhizobium meliloti 1021]
CATGAGTGATTAGCTCACC
>SMc02085(exbB) Score=4.3 Pos=-181 [Sinorhizobium meliloti 1021]
CTTGATTATTGTACTCCAC
>SMc02726(shmR) Score=4.3 Pos=-141 [Sinorhizobium meliloti 1021]
ATTGACAATCACACTCATG
>SMc02726(shmR) Score=3.9 Pos=-54 [Sinorhizobium meliloti 1021]
CTTGAGTTCGCCGCTCAAC
>SMc01611(fhuA1) Score=4.1 Pos=-61 [Sinorhizobium meliloti 1021]
GTTGACAGTACCGGTCACG
>SMc01514 Score=4.9 Pos=-115 [Sinorhizobium meliloti 1021]
CTTGACTTCATTACTCATA
>SMc04205(hmuR) Score=4.3 Pos=-119 [Sinorhizobium meliloti 1021]
TATGACATCCGTTTTCAAG
>SMc01747(hmuP) Score=4.9 Pos=-133 [Sinorhizobium meliloti 1021]
TATGAGTAATGAAGTCAAG
>SMb21432(irp6A) Score=4.7 Pos=-59 [Sinorhizobium meliloti 1021]
GTTGACCGGTAAAGTCATG
>SMc03787(bfd) Score=3.9 Pos=-68 [Sinorhizobium meliloti 1021]
GTTGACGGCAAATGTCCTC
>SMc00785(rirA) Score=4 Pos=-171 [Sinorhizobium meliloti 1021]
CTTAACTTAGTCAATCATA
>SMc01611(fhuA1) Score=4.1 Pos=-85 [Sinorhizobium meliloti 1021]
GTTGATCTAGACACTCATC
>SMc00592(PF00501) Score=4.4 Pos=-53 [Sinorhizobium meliloti 1021]
CTTGACGATCAAAGTCAGC
>SMa2412(rhrA) Score=5 Pos=-108 [Sinorhizobium meliloti 1021]
CAAGACTATTTAAGTCATG
>SMa2337(rhtX) Score=4.6 Pos=-59 [Sinorhizobium meliloti 1021]
GATGACGGCAACACTCATG
>SMa2410(rhbF) Score=3.5 Pos=-10 [Sinorhizobium meliloti 1021]
GGAGATTTCTATGCTCATG
>SMa1746(fepB) Score=4.1 Pos=-209 [Sinorhizobium meliloti 1021]
CATGAAAGCTTCGCTCAAC
>SMc02727(PF06904) Score=3.9 Pos=-88 [Sinorhizobium meliloti 1021]
GTTGAGCGGCGAACTCAAG
>SMc02727(PF06904) Score=4.3 Pos=-1 [Sinorhizobium meliloti 1021]
CATGAGTGTGATTGTCAAT
>SMc00784(fbpA) Score=4 Pos=-47 [Sinorhizobium meliloti 1021]
TATGATTGACTAAGTTAAG
>SMc00529(sufS2) Score=4.8 Pos=-165 [Sinorhizobium meliloti 1021]
CTTGACTAAACCAGTCAGC
>SMa2414(rhtA) Score=5 Pos=-79 [Sinorhizobium meliloti 1021]
CATGACTTAAATAGTCTTG
>SMc02889(rhtX2) Score=4.9 Pos=-64 [Sinorhizobium meliloti 1021]
CCTGAATGCAATAGTCAAG
# TF - Irr: SMc00329
>SMc01119(fssA) Score=6 Pos=-60 [Sinorhizobium meliloti 1021]
ATTTTGGAACAATTCTAAAAA
>SMc04019(hemH) Score=5.4 Pos=-65 [Sinorhizobium meliloti 1021]
TTTTTAGAAGGATTTGAAACT
>SMc00784(fbpA) Score=5.9 Pos=-148 [Sinorhizobium meliloti 1021]
AGTTTGGAACAATTCCAAAAA
>SMc00402(iprA) Score=4.9 Pos=-118 [Sinorhizobium meliloti 1021]
AACTTCAAGCCGTTCTAAACT
>SMc03787(bfd) Score=5.3 Pos=-119 [Sinorhizobium meliloti 1021]
AGTTTAGAATCGCTCTAATGC
>SMc00529(sufS2) Score=6.2 Pos=-133 [Sinorhizobium meliloti 1021]
ACTTTAGAACCGTTCAAAACT
>SMc00359(mbfA) Score=5.8 Pos=-31 [Sinorhizobium meliloti 1021]
TAATTAGAATTATTCTAAAGA
>SMc03104(hemA) Score=6 Pos=-246 [Sinorhizobium meliloti 1021]
ATTTTGGAATGGTTCAAAACT
>SMc00785(rirA) Score=5.9 Pos=-72 [Sinorhizobium meliloti 1021]
TTTTTGGAATTGTTCCAAACT
>SMb21432(irp6A) Score=5.3 Pos=-86 [Sinorhizobium meliloti 1021]
TGTTTGGAAGCGTTCTAAAAG
# TF - NagQ: SMc02876
>SMc02874(murQ) Score=6.3 Pos=-43 [Sinorhizobium meliloti 1021]
TGGTATTTTTTTGGCATT
>SMc02875(nagK) Score=-1.5 Pos=-174 [Sinorhizobium meliloti 1021]
AATGCCAAAAAAATACCA
# TF - GlcC: SMc00829
>SMc00832(glcD) Score=5.8 Pos=-46 [Sinorhizobium meliloti 1021]
TAGTGGTAAGCAAAAAATACCACTT
>SMc00830(mlr6914) Score=5.7 Pos=-130 [Sinorhizobium meliloti 1021]
AAGTGGTCAAATTGATTGTCCACTC
>SMc00831(lysR) Score=4.7 Pos=-178 [Sinorhizobium meliloti 1021]
AAGTGGTATTTTTTGCTTACCACTA
>SMb20850(lldD) Score=4.1 Pos=-100 [Sinorhizobium meliloti 1021]
GAGAGGTAAGATTTTTTGACCTCTC
>SMc00829(glcC) Score=4.9 Pos=-73 [Sinorhizobium meliloti 1021]
GAGTGGACAATCAATTTGACCACTT
# TF - NtrC: SMc01043
>SMb20436(narK) Score=4.5 Pos=-306 [Sinorhizobium meliloti 1021]
TGCACGATAATTGGGCA
>SMb20436(narK) Score=3.9 Pos=-276 [Sinorhizobium meliloti 1021]
GGCCCAATATTTGACCA
>SMc03806(glnK) Score=4.9 Pos=-214 [Sinorhizobium meliloti 1021]
TGCTTATATTTTAATCA
>SMc01041(nifR3) Score=4 Pos=-25 [Sinorhizobium meliloti 1021]
TGTCTAAAAATAGTGCA
>SMc00947(glnB) Score=4.4 Pos=-286 [Sinorhizobium meliloti 1021]
TGACTAAGAAATGTGCA
>SMc00947(glnB) Score=4.1 Pos=-254 [Sinorhizobium meliloti 1021]
TGCTCAAATAACATGCT
# TF - Mur: SMc02510
>SMc02509(sitA) Score=5.4 Pos=-80 [Sinorhizobium meliloti 1021]
GTTGCAAATGCTTCTCATT
# TF - ModE: SMc03199
>SMc03196(modA) Score=5.4 Pos=-82 [Sinorhizobium meliloti 1021]
ATTGTATTTCTACGAATATAGC
# TF - LexA: SMc01183
>SMc01235(uvrA) Score=5.6 Pos=-143 [Sinorhizobium meliloti 1021]
GTTCTTTTTTTGTTC
>SMc00866(PF04055) Score=5.7 Pos=-79 [Sinorhizobium meliloti 1021]
GTTCTTGATTTGTTC
>SMc03967(ruvC) Score=5.4 Pos=-58 [Sinorhizobium meliloti 1021]
GTTTTTGTTTTGTTC
>SMc00420(yifB) Score=4.7 Pos=-153 [Sinorhizobium meliloti 1021]
GTTCTATCATTGTTC
>SMc01183(lexA) Score=5.5 Pos=-35 [Sinorhizobium meliloti 1021]
GTTCTTGATTTGTTT
>SMc01461(uvrD) Score=0.3 Pos=-58 [Sinorhizobium meliloti 1021]
GAATAAAAGAAGAAC
>SMc01102(rmuC) Score=5.2 Pos=-49 [Sinorhizobium meliloti 1021]
GTTCTCGTTTTGATC
>SMc01375(dnaE) Score=0.5 Pos=-273 [Sinorhizobium meliloti 1021]
GAACAAAAAGGGAAC
>SMa0888(imuA) Score=0.7 Pos=-61 [Sinorhizobium meliloti 1021]
GAACAAATACAGAAC
>SMc00760(recA) Score=1.9 Pos=-73 [Sinorhizobium meliloti 1021]
GAACAAAACATGTAC
>SMc00760(recA) Score=2 Pos=-141 [Sinorhizobium meliloti 1021]
GAACAAGAATCGAAC
>SMa2321(uvrD2) Score=4.3 Pos=-59 [Sinorhizobium meliloti 1021]
GTTCCCCCTCCGTTC
>SMc01018(parE) Score=4.6 Pos=-132 [Sinorhizobium meliloti 1021]
ATTCGCCTTTTGTTC
>SMc04231(uvrB) Score=4.5 Pos=-60 [Sinorhizobium meliloti 1021]
GTTTCCCTTTTGTAC
>SMc02819(rna) Score=5.3 Pos=-36 [Sinorhizobium meliloti 1021]
GTTCCTGTTTTGTTT
>SMc01373(dinP) Score=4.6 Pos=-9 [Sinorhizobium meliloti 1021]
GTTCCGGATATGATC
>SMc01373(dinP) Score=5 Pos=-20 [Sinorhizobium meliloti 1021]
GTTCAACATTTGTTC
>SMc03790(imuA) Score=1.8 Pos=-36 [Sinorhizobium meliloti 1021]
GAACATAACATGAAC
>SMc01233(ssb) Score=0.8 Pos=-158 [Sinorhizobium meliloti 1021]
GAACAAAAAAAGAAC
# TF - LiuR: SMc01260
>SMc00977(acdH2) Score=5.9 Pos=-73 [Sinorhizobium meliloti 1021]
GTTGACGTTCACGTAAAA
>SMc02229(acdH) Score=6.3 Pos=-135 [Sinorhizobium meliloti 1021]
TTTGACGTTTACGCAAAC
>SMc02229(acdH) Score=4.6 Pos=-129 [Sinorhizobium meliloti 1021]
GTTTACGCAAACGTCAAA
>SMc02479(mdh) Score=6 Pos=-164 [Sinorhizobium meliloti 1021]
TCTTACGTTTACGTAAGA
>SMc01260(liuR1) Score=5.6 Pos=-58 [Sinorhizobium meliloti 1021]
TTTGACTTTTACGTCAAA
>SMc02377(etfD) Score=5.3 Pos=-163 [Sinorhizobium meliloti 1021]
GTTTACGTTTACGTTCAG
>SMc02377(etfD) Score=4.6 Pos=-157 [Sinorhizobium meliloti 1021]
GTTTACGTTCAGGTAACA
>SMc02162(fadD) Score=6.1 Pos=-147 [Sinorhizobium meliloti 1021]
GTTGACGTTTACGTCAAA
>SMc02150(PF03060) Score=5.4 Pos=-45 [Sinorhizobium meliloti 1021]
TTTGACGTTTACGAGAAC
>SMc02150(PF03060) Score=4.7 Pos=-39 [Sinorhizobium meliloti 1021]
GTTTACGAGAACGTCAAA
>SMc00041(SMc00041) Score=5 Pos=-44 [Sinorhizobium meliloti 1021]
ATTTACCTTGACGTTAAC
>SMc00041(SMc00041) Score=5.4 Pos=-38 [Sinorhizobium meliloti 1021]
CTTGACGTTAACGTCAAA
>SMc02391(PF09917) Score=5.2 Pos=-148 [Sinorhizobium meliloti 1021]
ATTTACCTTTACGTACGC
>SMc00729(etfB) Score=5.7 Pos=-187 [Sinorhizobium meliloti 1021]
TTTTACCTGTACGTAAAC
# TF - XylR: SMb20901
>SMb20901(xylR) Score=5.5 Pos=-293 [Sinorhizobium meliloti 1021]
TTTTTCTCGACAGTCGAGAAAAT
>SMb20902(xylF) Score=5.5 Pos=-115 [Sinorhizobium meliloti 1021]
ATTTTCTCGACTGTCGAGAAAAA
# TF - RutR: SMc01819
>SMc01814(pydX) Score=5.8 Pos=-71 [Sinorhizobium meliloti 1021]
ATTTTACCGTTTGATAAAAA
>SMa2361(pytM) Score=5.5 Pos=-34 [Sinorhizobium meliloti 1021]
ATTCTACCAATCGGTAAAAA
>SMc01819(rutR) Score=5.7 Pos=-153 [Sinorhizobium meliloti 1021]
ATTTGACCGGTTGGTAAACA
>SMc02884(pntD) Score=5.4 Pos=-157 [Sinorhizobium meliloti 1021]
TTTTTACCATCCGAAAAAAT
>SMc04127(pntA) Score=5.3 Pos=-80 [Sinorhizobium meliloti 1021]
CTTATACCAAATGGTAAAAA
>SMc01820(pydC) Score=5.5 Pos=-145 [Sinorhizobium meliloti 1021]
TGTTTACCAACCGGTCAAAT
# TF - PhnF: SM_b20758
>SMb20759(phnG) Score=6.2 Pos=-31 [Sinorhizobium meliloti 1021]
TTGTCTAGATCAATAGACAT
>SM_b20758(phnF) Score=6.2 Pos=-111 [Sinorhizobium meliloti 1021]
ATGTCTATTGATCTAGACAA
# RNA - Cobalamin
>SM_b20556(cbtC) Score=125.5 Pos=-261 [Sinorhizobium meliloti 1021]
ATACCAGATCATGTGATGGTTCCGCCCGACTGAAGAACGGCGGATGAAAAGGGAACACGGTGAGGACGACCCATCAGGGGCTAAAACCGTGGCTGCCCCCGCAACTGTGAGCGGCGAGCAAAGTCCAAGGATGCCATTGGCCATGAATCGGCTGATAAGGCGGACAAAGCTACGACCCGCAAGCCAGGAGACCTGCCATCACCTTGGGCGACACGCC
>SMb20056(btuF) Score=118.6 Pos=-397 [Sinorhizobium meliloti 1021]
CATTAACTGGGACCGACGGTTCCCCTACCCGTGAGGTGGAGGGGATTAATAGGGAACACGGTGCGGACGACCCAAGAGGGACCAAAACCGTGGCTGCCCCCGCAACTGTAAGCGGATCGTCGTTCATCCTTGTGGCGCCAAGGCGCCAGCCACTGCGCGCGTTGCGCGGGAAGGCAGATGAGCGACTCTGTCCGTGAGCCAGGAGACCTGCCGTCAAATCGATCCAACGTCA
>SMc00982(ardX) Score=103.1 Pos=-316 [Sinorhizobium meliloti 1021]
TAGATGAGGACACTCAAGGTGCCGCCTCGAAGGGAGGGCGGAGAATTGGGAAGCCGGTCAAATCCCGGCGCTGCCCCCGCAACGGTGGTGGAGCGAACAGCCACGGCAGAAGGCCACTGGACACCGCGTCCGGGAAGGCGCCGGGCAGGTCCCTTGCGGACGGCTCCAGAGCCCGGAAACCAGCCTTGAAGCAGAAATAGACCGT
>SMc00166(bluB) Score=92 Pos=-259 [Sinorhizobium meliloti 1021]
TGGCCATATGCCGCCGTCAGGTGCCCGCGAAATGCGGGGGAATCGGGAAGCCGGTGCAGTTCCGGCACGTGCCCAACGCTGTGAAGGGGACGTTCTCGCCAAAAAGGGCTCTGAATCTTTTCAGAGCTTTGCCACTGAATATTGAAGCTATTCGGGAAGGCGGCGCGAACGGATGATCCGAAGTCAGAAGACCGGCCTGGCGAGATAGACCGGCC
# RNA - FMN
>SMc01609(ribH2) Score=106.7 Pos=-200 [Sinorhizobium meliloti 1021]
AGCGTTCTCAGGGCGGGGTGAAATTCCCCACCGGCGGTAGCGAACACAGGATCGGGAATGGTCGGTGGTCGGAGCCCGCGAGCGCTTCGCATTTCGTGCGAAGGTCAGCAGATCCGGTCGAATTCCGGAGCCGACGGTTATAGTCCGGATGGAAGAGAGCAAGCAG
# RNA - TPP
>SMb20962(thiD) Score=75 Pos=-232 [Sinorhizobium meliloti 1021]
AGCGCATTCCGAGGGGAGCACCAGACGGTGCTGAGATGGCGTTGAGCCGGACCCTTGAACCTGATCCGGGTCATGCCGGCGTAGGAACGGAAAGATGGCCGCCA
>SMb20615(thiC) Score=67.9 Pos=-209 [Sinorhizobium meliloti 1021]
CCATTCACCAGGGGGGTCCCGGCAAGGGGCTGAGATACTGCTAGAGCGCGCAGTGACCCGTTGAACCTGATCCAGTTCACACTGGCGTAGGGACGGTGCAGACGTGCGACAGC
>SMc03869(thiB) Score=65.1 Pos=-161 [Sinorhizobium meliloti 1021]
CTGCTCTAACGGGGTGCCCTGGCCGGCTTTGCGACCATGGCTGAGAGGCTTCGAGCCAACCCGCGGAACCTGATCCGGCTCATACCGGCGGAGGGATTAGAAGCGATCGGACCGA
# RNA - serC
>SMc00640(serC) Score=71 Pos=-51 [Sinorhizobium meliloti 1021]
GCGGCGGGACACCCCTCCCCAACGAGGGGCTTCTATCTGAGAGGATAGCATAT
# RNA - speF
>SMc02983(speF) Score=322.6 Pos=-398 [Sinorhizobium meliloti 1021]
CCTTGCCCAAAGTCGCACGTGCCTGTGGGTGTCCGCCGACCCTCGATTAGGTGAGGTTATCGGTAAGGTACCTGGAACTAACCCCTCCAGTCGCTATTCCGGCCAACCGGGAAATGCGAGGACATCTTGAAGCAACGACGGTGCGGGCCTTTCTGGTGTCTGCCGGCTCTCCAACAGCCGGGGTTACTGAAGAGGCACACCTTCATTGCCGGAAGTGCGGTTGGGTTATTCCCTCCAATCCATGGCAGACAAAGCCGAATCCTAGCCTTTGCGGGCTTTGATTCAAATTCGCGCATCGAGCGCATGCATGGTT
# RNA - Glycine
>SMc02047(gcvT) Score=45.7 Pos=-144 [Sinorhizobium meliloti 1021]
CCGGTAGGACTCTGGAGAGAAGCGTTCGCGCTCGCCGAAGGGATAACAATCTCAGGCAAAGGGACAGAGGGGGCTCG
>SMc02047(gcvT) Score=54.2 Pos=-231 [Sinorhizobium meliloti 1021]
TTCGACCTCGTTGGGAGAAACCGGTTCGATCCGGTGCCGAAGGAGCAACCGCCCCGGAAACTCTCAGGCCAAAGGACCAGCAAGG
# RNA - SAM_alpha
>SMc03797(metA) Score=83.5 Pos=-72 [Sinorhizobium meliloti 1021]
AAATGATCCGTGGTGATTTGGCCGGCCGGCTTGCAGCCACGTTAAAGAAGTCGCTAAAGGGCCGAGGGAACAATGGATT
>SMc02217(metY) Score=83.2 Pos=-123 [Sinorhizobium meliloti 1021]
AGCTTTATCCCGTGGTGATTTGGCCGGTCGGCTTGCAGCCACGTTAAACAAGTAGCTAAAAAGGCCGGGTGTCAAACCGG
# RNA - ybhL
>SMc03839(ybhL) Score=78.4 Pos=-100 [Sinorhizobium meliloti 1021]
AGGCATGCTGGAGCCCCGCAGCGGCGCCTGGGCGCGCAAAGGAACGACAAGGTTCGCCGCCCGACACCGTAACTTCAACCGGGGCTTAAAT
# TF - RhaR: SMc02323
>SMc02322(rhaEW) Score=6.7 Pos=-104 [Sinorhizobium meliloti 1021]
TTGATCG---TTGATTG
>SMc02323(rhaR) Score=5.8 Pos=-63 [Sinorhizobium meliloti 1021]
ATGATTG---GTGATTG
>SMc02323(rhaR) Score=5.3 Pos=-53 [Sinorhizobium meliloti 1021]
GTGATTG---ATGCTCG
>SMc02322(rhaEW) Score=6.3 Pos=-114 [Sinorhizobium meliloti 1021]
ATGAACG---TTGATCG
>SMc02322(rhaEW) Score=6 Pos=-155 [Sinorhizobium meliloti 1021]
TCAATCA---TCAATCA
>SMc02323(rhaR) Score=6.4 Pos=-114 [Sinorhizobium meliloti 1021]
TCAATCA---ACGATCA
# TF - NifA: SMa0815
>SMa0825(nifH) Score=5 Pos=-192 [Sinorhizobium meliloti 1021]
TGTCGGCTTAGCGACA
>SMa0814(nifB) Score=5.4 Pos=-130 [Sinorhizobium meliloti 1021]
TGTCGGAAGTCCGACA
>SMa0872(orf110) Score=5.1 Pos=-194 [Sinorhizobium meliloti 1021]
TGTCAGGTCCGCGACA
>SMa0822(fixB) Score=4.9 Pos=-244 [Sinorhizobium meliloti 1021]
TGTCGGCCCCTCGACA
# TF - EutR: SMc01602
>SMc01600(eutA) Score=5.6 Pos=-95 [Sinorhizobium meliloti 1021]
TTTGAAAAGATCGTTTCAGT
>SMc01600(eutA) Score=5.6 Pos=-53 [Sinorhizobium meliloti 1021]
CGTGAAGAATTCTCTTCACA
>SMc01602(eutR) Score=5.6 Pos=-137 [Sinorhizobium meliloti 1021]
TGTGAAGAGAATTCTTCACG
>SMc01602(eutR) Score=5.6 Pos=-95 [Sinorhizobium meliloti 1021]
ACTGAAACGATCTTTTCAAA
# TF - AglR: SMc03060
>SMc03060(aglR) Score=6.3 Pos=-30 [Sinorhizobium meliloti 1021]
TATTCAAAGCGCTTTGGAAG
>SMc03060(aglR) Score=6.6 Pos=-233 [Sinorhizobium meliloti 1021]
CATTCAAAGCGCTTTGAGTT
>SMc03061(aglE) Score=6.6 Pos=-104 [Sinorhizobium meliloti 1021]
AACTCAAAGCGCTTTGAATG
# TF - ThuR: SMb20324
>SMb20324(thuR) Score=6 Pos=-240 [Sinorhizobium meliloti 1021]
AATTTAAAACGATTTGGATC
>SMb20325(thuE) Score=6 Pos=-258 [Sinorhizobium meliloti 1021]
GATCCAAATCGTTTTAAATT
>SMb20325(thuE) Score=4.9 Pos=-63 [Sinorhizobium meliloti 1021]
TACCCAAACCGTTTTCGAAT
# TF - PckR: SMc02975
>SMc03983(fba) Score=5.5 Pos=-181 [Sinorhizobium meliloti 1021]
CTTTTCAAACGATTAAAATT
>SMc02495 Score=4.7 Pos=-203 [Sinorhizobium meliloti 1021]
CGAATAAATCGGTTGAATCA
>SMc03983(fba) Score=4.9 Pos=-162 [Sinorhizobium meliloti 1021]
TATTTAAATCGTTTTAGCCC
>SMc02479(mdh) Score=5 Pos=-140 [Sinorhizobium meliloti 1021]
CGATCTAACCGATTGAAATT
>SMc02562(pckA) Score=5.1 Pos=-157 [Sinorhizobium meliloti 1021]
CGATTCAACCGATTAAAAAA
>SMc02562(pckA) Score=5.3 Pos=-127 [Sinorhizobium meliloti 1021]
TCTTTAAATCGATTAATATA
>SMc03070(zwf) Score=5.5 Pos=-55 [Sinorhizobium meliloti 1021]
ATTTTAAATCGATTAGATTA
>SMc02834(mgsA) Score=5.3 Pos=-86 [Sinorhizobium meliloti 1021]
CCTTCAAATCGATTTAAACG
>SMc02463(sdhC) Score=5 Pos=-160 [Sinorhizobium meliloti 1021]
CCGTCAAATCGATTAAATTG
>SMc02975(pckR) Score=4.2 Pos=-59 [Sinorhizobium meliloti 1021]
TAATTTAAACAGTTTAAAGG
>SMc03153(eda) Score=5.4 Pos=-30 [Sinorhizobium meliloti 1021]
TTATTCAATCGTTTTAAAAG
>SMc04007(COG3931) Score=4.7 Pos=-120 [Sinorhizobium meliloti 1021]
AACTCTAATCGATTATAATC
>SMc04006(COG5480) Score=4.7 Pos=-129 [Sinorhizobium meliloti 1021]
GATTATAATCGATTAGAGTT
# TF - HrcA: SMc01143
>SMc00912(groS) Score=6.7 Pos=-85 [Sinorhizobium meliloti 1021]
CTAGCACTCGCTTGATATGAGTGCTAA
>SMa0745(groS) Score=6.9 Pos=-83 [Sinorhizobium meliloti 1021]
CTAGCACTCTCGCGTGAAGAGTGCTAA
# TF - PsiR: SMb20483
>SMb20484(psiA) Score=5.4 Pos=-151 [Sinorhizobium meliloti 1021]
AAGAAATATCGATTGTGCAA
>SMb20484(psiA) Score=6.6 Pos=-173 [Sinorhizobium meliloti 1021]
TTGCACCATCGATTGTGCAA
>SMb20483(psiR) Score=5.4 Pos=-142 [Sinorhizobium meliloti 1021]
TTGCACAATCGATATTTCTT
>SMb20483(psiR) Score=6.6 Pos=-120 [Sinorhizobium meliloti 1021]
TTGCACAATCGATGGTGCAA
# TF - SMb20537: SMb20537
>SMb20537(SMb20537) Score=6 Pos=-38 [Sinorhizobium meliloti 1021]
CTCTTGCAAATTTGCATTGA
>SMb20538(SMb20538) Score=6 Pos=-129 [Sinorhizobium meliloti 1021]
TCAATGCAAATTTGCAAGAG
# TF - SMb20667: SMb20667
>SMb20667(SMb20667) Score=6.5 Pos=-81 [Sinorhizobium meliloti 1021]
AATTGGTAGCGCTGCCAAAA
>SMb20667(SMb20667) Score=6.5 Pos=-103 [Sinorhizobium meliloti 1021]
CTTTGGCAGCGCTGCCAACC
>SMb20668(ygbJ) Score=6.5 Pos=-81 [Sinorhizobium meliloti 1021]
TTTTGGCAGCGCTACCAATT
>SMb20668(ygbJ) Score=6.5 Pos=-59 [Sinorhizobium meliloti 1021]
GGTTGGCAGCGCTGCCAAAG
# TF - MocR: SMb20817
>SM_b20818(mocD) Score=5.6 Pos=-153 [Sinorhizobium meliloti 1021]
ATTGAGAGAATATATCATG
>SMb20817(mocR) Score=5.6 Pos=-71 [Sinorhizobium meliloti 1021]
CATGATATATTCTCTCAAT
# TF - SmoR: SMb21372
>SMb21377 Score=5.5 Pos=-114 [Sinorhizobium meliloti 1021]
AAATTGACGCGCGGTAAGTT
# TF - SoxR: SMc00182
>SMc03095 Score=6.2 Pos=-59 [Sinorhizobium meliloti 1021]
ACCTCAAGTACGGTTGAGGT
>SMc00183(PF03358) Score=6.5 Pos=-67 [Sinorhizobium meliloti 1021]
ACCTCAACTATAGTTGAGGT
>SMc01217(PF07690) Score=5.7 Pos=-62 [Sinorhizobium meliloti 1021]
ACCTCAACCGCGATTGAGGT
>SMc00182(soxR) Score=6.5 Pos=-31 [Sinorhizobium meliloti 1021]
ACCTCAACTATAGTTGAGGT
# TF - CueR: SMb21579, SMa1014
>SMc02279(PF11162) Score=5 Pos=-147 [Sinorhizobium meliloti 1021]
ACCTTGCCATCGTTGTAAGCC
>SMb21578(copA) Score=5.9 Pos=-55 [Sinorhizobium meliloti 1021]
ACCTTCCCATTATTGGAAGGA
>SMa1013(copA) Score=5.6 Pos=-57 [Sinorhizobium meliloti 1021]
ACCTTACCATTGTTGGAAGGA
>SMb20560(copZ) Score=5.7 Pos=-57 [Sinorhizobium meliloti 1021]
ACCTTGCCATCGTTGGAAGCT
>SMa1009(copZ) Score=4.7 Pos=-59 [Sinorhizobium meliloti 1021]
ACCTTGCCATCGTTGGAAACG
# TF - MerR: SMa0281
>SMa0280(grxC) Score=5.7 Pos=-66 [Sinorhizobium meliloti 1021]
ACTCTGTACCATGCTACGGAAC
# TF - CadR-PbrR: SMc00109
>SMc04128(cadA) Score=6 Pos=-54 [Sinorhizobium meliloti 1021]
AACCTCTAGCCGCTAGAGGAC
# TF - AduR: SMb21272
>SMb21272(aduR) Score=6.3 Pos=-43 [Sinorhizobium meliloti 1021]
CAGCTTAATCGTTTAATCAT
# TF - SMb21598: SMb21598
>SMb21597(COG0673) Score=6.6 Pos=-58 [Sinorhizobium meliloti 1021]
TTCCGTAAACGTTTACGGTG
>SMb21598(SMb21598) Score=6.7 Pos=-195 [Sinorhizobium meliloti 1021]
CACCGTAAACGTTTACGGAA
# TF - SMb21706: SMb21706
>SMb21706(SMb21706) Score=6.5 Pos=-297 [Sinorhizobium meliloti 1021]
GTGAGAAAACCTTTTCTCAG
>SMb21706(SMb21706) Score=6.7 Pos=-264 [Sinorhizobium meliloti 1021]
TTGAGAAAAGGTTTTCTCAT
# TF - SMc04260: SMc04260
>SMc04259(SMc04259) Score=5.7 Pos=-32 [Sinorhizobium meliloti 1021]
TTACGGCAACGTTACAGTGA
>SMc04260(SMc04260) Score=5.6 Pos=-143 [Sinorhizobium meliloti 1021]
CTACTGTATCGTTACAGATT
# TF - SMb20717: SMb20717
>SMb20717(SMb20717) Score=6.2 Pos=-208 [Sinorhizobium meliloti 1021]
CGATGTAAAGGTTTACATAA
>SMb20718(SMb20718) Score=6.2 Pos=-78 [Sinorhizobium meliloti 1021]
TTATGTAAACCTTTACATCG
>SMb20718(SMb20718) Score=5.5 Pos=-57 [Sinorhizobium meliloti 1021]
GAGTGTAAAGGTTTACATGA
>SMb20717(SMb20717) Score=5.5 Pos=-229 [Sinorhizobium meliloti 1021]
TCATGTAAACCTTTACACTC
# TF - Atu2740: SMa0246
>SMa0244(Atu2739) Score=4.9 Pos=-124 [Sinorhizobium meliloti 1021]
GTTGTCTGATAAC
>SMa0241(Atu2738) Score=4.9 Pos=-83 [Sinorhizobium meliloti 1021]
GTTATCAGACAAC
>SMa0247(Atu2741) Score=5.6 Pos=-48 [Sinorhizobium meliloti 1021]
GTTGTCAGACATC
# TF - SMb20014: SMb20014
>SMb20018(SMc20018) Score=6 Pos=-57 [Sinorhizobium meliloti 1021]
GATTGAAATCGATTACATTT
# TF - KglR: SMa0078
>SMa0079(Sma0079) Score=5.9 Pos=-77 [Sinorhizobium meliloti 1021]
ATTTTAGATCGATCTAACTG
# TF - AfrR: SMc04401
>SMc04402(PF06187) Score=6.3 Pos=-260 [Sinorhizobium meliloti 1021]
TAATTGGAACGTTCCAATTT
>SMc04402(PF06187) Score=6 Pos=-56 [Sinorhizobium meliloti 1021]
AATTTGGAACGATCTAAATT
>SMc04401(afrR) Score=6 Pos=-261 [Sinorhizobium meliloti 1021]
AATTTAGATCGTTCCAAATT
>SMc04401(afrR) Score=6.3 Pos=-57 [Sinorhizobium meliloti 1021]
AAATTGGAACGTTCCAATTA
# TF - XylR: SMc03165
>SMc03165(xylR) Score=6.3 Pos=-52 [Sinorhizobium meliloti 1021]
TCTGATTTACGTACATCAAA
# TF - pRL90265: SMb20154
>SMb20150(PF00459) Score=5.9 Pos=-52 [Sinorhizobium meliloti 1021]
CGATGAACACGTGTGCAATA
>SMb20155(SMb20155) Score=5.7 Pos=-298 [Sinorhizobium meliloti 1021]
GATTGCTCACGTGTGCATTT
>SMb20155(SMb20155) Score=5.5 Pos=-350 [Sinorhizobium meliloti 1021]
AACTGAACACGTGTGCGTAT
>SMb20154(pRL90265) Score=5.7 Pos=-232 [Sinorhizobium meliloti 1021]
AAATGCACACGTGAGCAATC
>SMb20150(PF00459) Score=5.6 Pos=-34 [Sinorhizobium meliloti 1021]
TATTGCGCGCGTGTGCAATG
>SMb20154(pRL90265) Score=5.5 Pos=-180 [Sinorhizobium meliloti 1021]
ATACGCACACGTGTTCAGTT
# TF - TauR: SMb21525
>SMb21526(tauA) Score=10.8 Pos=-140 [Sinorhizobium meliloti 1021]
CTGGACTCAT------------CTGGATATAA
# TF - SMb20039: SMb20039
>SMb20040(COG697) Score=12.9 Pos=-104 [Sinorhizobium meliloti 1021]
ATCCGTACTGG-(8)-CCATGACAGTT-(6)-AACTGTACCTT
# TF - Mll0059: SMc00490
>SMc03984(phzF) Score=7.7 Pos=-85 [Sinorhizobium meliloti 1021]
AATTGTCA---AGACAAGT
>SMc00491(PF06568) Score=9 Pos=-181 [Sinorhizobium meliloti 1021]
AGTTGTCA---TGACAATT
>SMc00490(Mll0059) Score=9 Pos=-10 [Sinorhizobium meliloti 1021]
AATTGTCA---TGACAACT
# TF - UxuR2: SMb20441
>SMb20441(uxuR2) Score=5.4 Pos=-55 [Sinorhizobium meliloti 1021]
GAATTGGTATGACCACTTG
# TF - MdcY: SMa0160
>SMa0160(mdcY) Score=5.2 Pos=-50 [Sinorhizobium meliloti 1021]
TTGTATACAA
>SMa0157(matP) Score=5.2 Pos=-88 [Sinorhizobium meliloti 1021]
TTGTATACAA
# TF - FnrN/FixK/AadR: SMa1225, SMa1141, SMa0762, SMa0662
>SMa1250(nirK) Score=3.6 Pos=-192 [Sinorhizobium meliloti 1021]
TCTTTGACAATTGGCAAAGA
>SMa1250(nirK) Score=4.5 Pos=-91 [Sinorhizobium meliloti 1021]
TGTTTGTTCCACCTCAAAGA
>SMa1243(paz) Score=4.7 Pos=-92 [Sinorhizobium meliloti 1021]
TATTTGACAAGCATCAAAGA
>SMa1220(ccoN) Score=5.7 Pos=-109 [Sinorhizobium meliloti 1021]
CACTTGATCTGGATCAAGGT
>SMa1211(ccoG) Score=5.3 Pos=-82 [Sinorhizobium meliloti 1021]
GACTTGACGCAGATCAAGGT
>SMa1296(adhA) Score=4.9 Pos=-126 [Sinorhizobium meliloti 1021]
TCTTTGATGCCCGTCAAGGA
>SMa1241(napE) Score=4.7 Pos=-131 [Sinorhizobium meliloti 1021]
TAATTGACGGAAATCAATTT
>SMc03104(hemA) Score=4.3 Pos=-291 [Sinorhizobium meliloti 1021]
TGCTTGACTTCGATCGATGT
>SMa1179(nosR) Score=4.7 Pos=-83 [Sinorhizobium meliloti 1021]
AAGTTGATCTGGCGCAAAGA
>SMa1118(hspC2) Score=4.9 Pos=-172 [Sinorhizobium meliloti 1021]
TCTTTGACGCCGGTCAATGA
>SMc00009(ctaC) Score=5.5 Pos=-38 [Sinorhizobium meliloti 1021]
GGTTTGATCCTGATCAAGCG
# TF - FixJ: SMa1138, SMa1139
>SMa1139(fixJf) Score=5.6 Pos=-40 [Sinorhizobium meliloti 1021]
TGTAACAGAGTGTAACG
>SMa1141(fixKf) Score=5.6 Pos=-105 [Sinorhizobium meliloti 1021]
CGTTACACTCTGTTACA
# TF - YrdX2: SMc01406
>SMc01488(COG5349) Score=9.7 Pos=-62 [Sinorhizobium meliloti 1021]
ATGCATACAAT--------CTTGTATGGTT
# TF - EutR: SMb20426
>SMb20427(ehuA) Score=3.1 Pos=-136 [Sinorhizobium meliloti 1021]
ATTGTCATGATATTAT
>SMb20426(EutR) Score=3.6 Pos=-135 [Sinorhizobium meliloti 1021]
ATTGAGCTGATTTTGA
>SMb20425(doeX) Score=3.6 Pos=-90 [Sinorhizobium meliloti 1021]
TCAAAATCAGCTCAAT
>SMb20427(ehuA) Score=3.6 Pos=-113 [Sinorhizobium meliloti 1021]
ATTGACATGATTTGGG
# TF - FixJ: SMa1229
>SMa0815(nifA) Score=3.1 Pos=-154 [Sinorhizobium meliloti 1021]
TTACAAGAACCAACTTAC
>SMc03253(SMc03253) Score=5 Pos=-355 [Sinorhizobium meliloti 1021]
CTAGGTAGTTTCCCTTAG
>SMa1225(fixK) Score=5.2 Pos=-87 [Sinorhizobium meliloti 1021]
CTAAGTAATTTCCCTTAG
>SMa0762(fixK) Score=4.8 Pos=-87 [Sinorhizobium meliloti 1021]
CTAAGTAGTTCCCTTTAG