Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Agrobacterium tumefaciens str. C58 (Cereon)

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF AduR Adenosine Adenosine utilization 1 1
TF AglR Alpha-glucoside; Maltose; Trehalose; Sucrose Alpha-glucosides utilization 2 4
TF AnsR Aspartate utilization; Asparagine degradation 2 4
TF Atu2740 Sugar utilization 3 3
TF Atu3908 2 2
TF Atu5239 2 4
TF BioR Biotin biosynthesis 2 2
TF CadR-PbrR Lead ion, (Pb2+); Cadmium, ion (Cd2+) Lead resistance; Cadmium resistance 2 2
TF CueR Copper ion, (Cu+) Copper resistance 3 2
TF EutR Ethanolamine Ethanolamine utilization 2 4
TF EutR Ectoine utilization 3 3
TF FnrN/FixK/AadR Oxygen Oxidative stress response; Nitrogen fixation 19 18
TF GlcC Glycolate Glycolate utilization 5 3
TF HrcA Heat shock Heat shock response 1 1
TF HutC cis-Urocanic acid Histidine utilization 5 5
TF HypR Proline Proline and 4-hydrohyproline utilization 6 6
TF IdnR L-idonate Idonate utilization 4 6
TF Irr Heme Iron homeostasis 21 13
TF LexA DNA damage SOS response 22 21
TF LiuR Branched-chain amino acid degradation 9 11
TF Mll0059 2 2
TF ModE Molybdate Molybdenum homeostasis 1 2
TF Mur Iron ion, (Fe2+) Manganese homeostasis 2 3
TF NadQ NAD biosynthesis 1 1
TF NagQ N-acetylglucosamine N-acetylglucosamine utilization 2 4
TF NnrR Nitric oxide Denitrification 8 10
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 2 5
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 10 4
TF PckR Central carbohydrate metabolism 13 13
TF PdxQ2 Metabolite transport; Pyridoxine/pyridoxal homeostasis 2 2
TF PhnF Phosphonate utilization 4 2
TF PsiR Psicose Psicose utilization 2 4
TF RL3595 Sugar utilization 2 2
TF RbsR2 Ribose Ribose utilization 1 2
TF RhaR Rhamnose Rhamnose utilization 2 5
TF RhiR Rhamogalacturonate oligosaccharides Rhamnogalacturonides utilization 2 4
TF RirA Iron ion, (Fe2+) Iron homeostasis 19 15
TF RutR Uracil Pyrimidine utilization 5 6
TF SMb20014 Sugar utilization 1 2
TF SMb20039 1 1
TF SMb20537 Sugar utilization 2 2
TF SMb21598 Sugar utilization 2 2
TF SMb21706 Sugar utilization 3 2
TF SMc04260 Sugar utilization 5 4
TF SahR S-adenosylhomocysteine Methionine metabolism 4 4
TF SmoR Mannitol; Sorbitol Sorbitol utilization; Mannitol utilization 2 3
TF SocR Mannopine; Deoxyfructosyl glutamine Santhopine utilization 2 4
TF SoxR Paraquat Superoxide stress response 7 4
TF ThuR Trehalose Trehalose utilization 2 4
TF UxuR2 Galacturonate utilization 3 7
TF VanR Vanillate Vanillate utilization 4 8
TF XylR Xylose Xylose utilization 3 2
TF XylR Xylose Xylose utilization 4 3
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 7 9
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 11 6
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA Glycine Glycine Glycine metabolism 1 2
RNA SAM_alpha S-adenosylmethionine Methionine biosynthesis 2 2
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 3 3
RNA Trp_leader Tryptophan biosynthesis 1 1
RNA serC Serine biosynthesis 1 1
RNA speF Ornithine degradation 1 1
RNA ybhL 1 1
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