Regulon of Irr in Agrobacterium tumefaciens str. C58 (Cereon)
| Regulator type: | Transcription factor |
| TF locus tag: | Atu0153 |
| Regulator family: | FUR |
| Regulation mode: | repressor |
| Biological process: | Iron homeostasis |
| Effector: | Heme |
| Regulog: | Irr - Rhizobiales |
| Statistics of regulated genes: | |
| - Genes | 27 |
| - Operons | 12 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - Irr
- By taxonomy - Rhizobiales
- By TF family - FUR
- By effector - Heme
- By pathway - Iron homeostasis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -130
Score: 5.3 Sequence: AATTCAGAACCGTTCTAAAAC
Locus tag: Atu2473
Name: fatB Funciton: iron siderophore ABC transporter, periplasmic protein
Locus tag: Atu2474
Name: fatD Funciton: iron siderophore ABC transporter, permease protein
Locus tag: Atu2475
Name: fatC Funciton: iron siderophore ABC transporter, permease protein
Locus tag: Atu2476
Name: fatE Funciton: iron siderophore ABC transporter, ATPase protein |
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fatB
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iron siderophore ABC transporter, periplasmic protein
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fatD
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iron siderophore ABC transporter, permease protein
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fatC
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iron siderophore ABC transporter, permease protein
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fatE
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iron siderophore ABC transporter, ATPase protein
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Position: -125
Score: 6.6 Sequence: AGTTTAGAATAATTCGAAACT
Locus tag: Atu1825
Name: sufS2 Funciton: Cysteine desulfurase (EC 2.8.1.7)
Locus tag: Atu1824
Name: sufB Funciton: ABC transporter involved in Fe-S cluster assembly, permease protein
Locus tag: Atu1823
Name: sufC Funciton: ABC transporter involved in Fe-S cluster assembly, ATP-binding protein
Locus tag: Atu1822
Name: sufD Funciton: ABC transporter involved in Fe-S cluster assembly, permease protein
Locus tag: Atu1821
Name: sufS1 Funciton: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
Locus tag: Atu1820
Name: PF01883 Funciton: PaaD-like protein (DUF59) involved in Fe-S cluster assembly
Locus tag: Atu1819
Name: sufA Funciton: Iron binding protein SufA for iron-sulfur cluster assembly |
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sufS2
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Cysteine desulfurase (EC 2.8.1.7)
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sufB
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ABC transporter involved in Fe-S cluster assembly, permease protein
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sufC
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ABC transporter involved in Fe-S cluster assembly, ATP-binding protein
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sufD
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ABC transporter involved in Fe-S cluster assembly, permease protein
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sufS1
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Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
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PF01883
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PaaD-like protein (DUF59) involved in Fe-S cluster assembly
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sufA
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Iron binding protein SufA for iron-sulfur cluster assembly
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Position: -79
Score: 5.4 Sequence: TTGTTAGAATTATTCTAAAAC
Position: -32
Score: 6.2 Sequence: TATTTAGAATTATTCTAAAAA
Locus tag: Atu0251
Name: mbfA Funciton: membrane-bound ferritin |
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mbfA
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membrane-bound ferritin
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Position: -107
Score: 5.5 Sequence: TGTTTCAAAGCATTCTAAACT
Locus tag: Atu0288
Name: iprA Funciton: Iron-regulated protein A precursor |
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iprA
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Iron-regulated protein A precursor
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Position: -66
Score: 5.7 Sequence: TTTCTGGAATTGTTCTAAACT
Locus tag: Atu0201
Name: rirA Funciton: Iron-responsive transcriptional regulator RirA, Rrf2 family |
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rirA
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Iron-responsive transcriptional regulator RirA, Rrf2 family
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Position: -117
Score: 5.2 Sequence: TTATTGGAATGGTTCAAAACA
Locus tag: Atu2613
Name: hemA Funciton: 5-aminolevulinate synthase (EC 2.3.1.37) |
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hemA
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5-aminolevulinate synthase (EC 2.3.1.37)
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Position: -113
Score: 5.7 Sequence: AGTTTAGAACAATTCCAGAAA
Locus tag: Atu0202
Name: fbpA Funciton: Ferric iron ABC transporter, periplasmic protein |
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fbpA
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Ferric iron ABC transporter, periplasmic protein
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Position: -168
Score: 5.6 Sequence: AGATTTGAATAATTCCAAGCT
Locus tag: Atu4022
Name: fhuA Funciton: Ferric hydroxamate outer membrane receptor FhuA
Locus tag: Atu4023
Name: fhuD Funciton: Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD
Locus tag: Atu4024
Name: fhuB Funciton: Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), permease component FhuB
Locus tag: Atu4025
Name: fhuC Funciton: Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), ATP-binding protein FhuC |
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fhuA
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Ferric hydroxamate outer membrane receptor FhuA
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fhuD
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Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD
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fhuB
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Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), permease component FhuB
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fhuC
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Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), ATP-binding protein FhuC
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Position: -89
Score: 5.1 Sequence: AGTTAAGAATGGCTCTAAAAC
Locus tag: Atu3391
Name: irp6A Funciton: Iron ABC transporter periplasmic protein
Locus tag: Atu3390
Name: irp6A Funciton: Iron ABC transporter periplasmic protein
Locus tag: Atu3389
Name: irp6B Funciton: Iron ABC transporter permease component
Locus tag: Atu3388
Name: irp6C Funciton: Iron ABC transporter, ATP-binding protein |
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irp6A
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Iron ABC transporter periplasmic protein
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irp6A
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Iron ABC transporter periplasmic protein
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irp6B
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Iron ABC transporter permease component
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irp6C
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Iron ABC transporter, ATP-binding protein
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Position: -92
Score: 5.7 Sequence: AATTTAGAACTGTTCGAAAAC
Locus tag: Atu3916
Name: irgA Funciton: iron-regulated outer membrane receptor irgA |
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irgA
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iron-regulated outer membrane receptor irgA
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Position: -39
Score: 5.4 Sequence: TGTTTAGAACAATTCTCAGAT
Locus tag: Atu1350
Name: fdx Funciton: Ferredoxin, 2Fe-2S |
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fdx
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Ferredoxin, 2Fe-2S
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Position: -56
Score: 5.7 Sequence: TTTTTGGAAGAATTCTAAATT
Locus tag: Atu0351
Name: fssA Funciton: putative nifU-like iron-sulphur cluster scaffold protein |
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fssA
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putative nifU-like iron-sulphur cluster scaffold protein
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |