Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LiuR in Agrobacterium tumefaciens str. C58 (Cereon)

Properties
Regulator type: Transcription factor
TF locus tag: Atu1546
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuR - Rhizobiales
Statistics of regulated genes:
- Genes 18
- Operons 9
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 84 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -37
Score: 4.7
Sequence: ACTTACGTGCGCGTAAAC
Locus tag: Atu0415
Name: PF03060
Funciton: Dioxygenases related to 2-nitropropane dioxygenase
Atu0415
PF03060
Dioxygenases related to 2-nitropropane dioxygenase
Position: -71
Score: 6.4
Sequence: ATTGACGTTTACGTAAAA
Locus tag: Atu0732
Name: acdH2
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: Atu0733
Name: echH
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Atu0732
acdH2
Acyl-CoA dehydrogenase (EC 1.3.99.3)
Atu0733
echH
Enoyl-CoA hydratase (EC 4.2.1.17)
Position: -160
Score: 6
Sequence: TCTTACGTTTACGTAAGA
Locus tag: Atu2639
Name: mdh
Funciton: Malate dehydrogenase (EC 1.1.1.37)
Locus tag: Atu2638
Name: sucC
Funciton: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Locus tag: Atu2637
Name: sucD
Funciton: Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
Locus tag: Atu2636
Name: sucA
Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: Atu2635
Name: sucB
Funciton: Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
Atu2639
mdh
Malate dehydrogenase (EC 1.1.1.37)
Atu2638
sucC
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Atu2637
sucD
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
Atu2636
sucA
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Atu2635
sucB
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
Position: -160
Score: 5.6
Sequence: ATTTACGTTAACGTCAAC
Locus tag: Atu3595
Name: etfB
Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: Atu3596
Name: etfA
Funciton: Electron transfer flavoprotein, alpha subunit
Locus tag: Atu3597
Name: hbdA
Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
Atu3595
etfB
Electron transfer flavoprotein, beta subunit
Atu3596
etfA
Electron transfer flavoprotein, alpha subunit
Atu3597
hbdA
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
Position: -208
Score: 5.4
Sequence: TTTTACGTGAACGTCAAA
Locus tag: Atu1009
Name: PF09917
Funciton: Protein of unknown function, PF09917
Atu1009
PF09917
Protein of unknown function, PF09917
Position: -243
Score: 5.9
Sequence: ATTGACGTTTACGTTAGA
Locus tag: Atu0405
Name: fadD
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Atu0405
fadD
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -231
Score: 5.2
Sequence: TATTACGTGCACGTAAAA
Locus tag: Atu0994
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Atu0994
etfD
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Position: -84
Score: 5.2
Sequence: TTTGACGTTTACGCGCAC
Position: -78
Score: 4.6
Sequence: GTTTACGCGCACGTCAAA
Locus tag: Atu0501
Name: acdH
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: Atu0502
Name: acdA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: Atu0503
Name: acdB
Funciton: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Atu0501
acdH
Acyl-CoA dehydrogenase (EC 1.3.99.3)
Atu0502
acdA
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Atu0503
acdB
Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Position: -56
Score: 5
Sequence: ATTGACTTTTACGTGAAG
Position: -50
Score: 4.8
Sequence: TTTTACGTGAAGGTCAAA
Locus tag: Atu1546
Name: liuR1
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Atu1546
liuR1
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
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