Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of PckR in Agrobacterium tumefaciens str. C58 (Cereon)

Properties
Regulator type: Transcription factor
TF locus tag: Atu4505
Regulator family: LacI
Regulation mode: repressor
Biological process: Central carbohydrate metabolism
Effector:
Regulog: PckR - Rhizobiales
Statistics of regulated genes:
- Genes 25
- Operons 11
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 99 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -23
Score: 4.8
Sequence: CAATATAATCGATTAAACTC
Locus tag: Atu3761
Name: COG5480
Funciton: Predicted integral membrane protein
Locus tag: Atu3762
Name: pykA
Funciton: Pyruvate kinase (EC 2.7.1.40)
Atu3761
COG5480
Predicted integral membrane protein
Atu3762
pykA
Pyruvate kinase (EC 2.7.1.40)
Position: -135
Score: 4.8
Sequence: GAGTTTAATCGATTATATTG
Locus tag: Atu3760
Name: COG3931
Funciton: Predicted N-formylglutamate amidohydrolase
Locus tag: Atu3759
Name: COG3492
Funciton: hypothetical protein
Atu3760
COG3931
Predicted N-formylglutamate amidohydrolase
Atu3759
COG3492
hypothetical protein
Position: -36
Score: 5
Sequence: GATTTCAATCGTTTCAATCG
Locus tag: Atu4494
Name: eda
Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) / 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16)
Atu4494
eda
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) / 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16)
Position: -69
Score: 4.1
Sequence: TGTTTAAATTGTTTAATTGC
Locus tag: Atu4505
Name: pckR
Funciton: Transcriptional regulator of phosphoenolpyruvate carboxykinase, LacI family
Locus tag: Atu4506
Name: null
Funciton: hypothetical protein
Locus tag: Atu4507
Name: hpr
Funciton: Glyoxylate reductase (EC 1.1.1.79) / Hydroxypyruvate reductase (EC 1.1.1.81)
Atu4505
pckR
Transcriptional regulator of phosphoenolpyruvate carboxykinase, LacI family
Atu4506
hypothetical protein
Atu4507
hpr
Glyoxylate reductase (EC 1.1.1.79) / Hydroxypyruvate reductase (EC 1.1.1.81)
Position: -163
Score: 4.8
Sequence: TGAACCAATCGATTAAATTC
Locus tag: Atu2645
Name: sdhC
Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: Atu2644
Name: sdhD
Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein
Locus tag: Atu2643
Name: sdhA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Atu2642
Name: sdhB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Atu2645
sdhC
Succinate dehydrogenase cytochrome b-556 subunit
Atu2644
sdhD
Succinate dehydrogenase hydrophobic membrane anchor protein
Atu2643
sdhA
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Atu2642
sdhB
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Position: -40
Score: 5.3
Sequence: GCTTCAAATCGATTTAATTC
Locus tag: Atu0185
Name: mgsA
Funciton: Methylglyoxal synthase (EC 4.2.3.3)
Locus tag: Atu0184
Name: glk
Funciton: Glucokinase (EC 2.7.1.2)
Atu0185
mgsA
Methylglyoxal synthase (EC 4.2.3.3)
Atu0184
glk
Glucokinase (EC 2.7.1.2)
Position: -136
Score: 5.1
Sequence: TGATCTAAACGATTGAAAAT
Locus tag: Atu2639
Name: mdh
Funciton: Malate dehydrogenase (EC 1.1.1.37)
Locus tag: Atu2638
Name: sucC
Funciton: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Locus tag: Atu2637
Name: sucD
Funciton: Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
Locus tag: Atu2636
Name: sucA
Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: Atu2635
Name: sucB
Funciton: Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
Atu2639
mdh
Malate dehydrogenase (EC 1.1.1.37)
Atu2638
sucC
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Atu2637
sucD
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
Atu2636
sucA
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Atu2635
sucB
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
Position: -56
Score: 5.5
Sequence: TTTTTAAATCGATTAGATTA
Locus tag: Atu0600
Name: zwf
Funciton: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Locus tag: Atu0599
Name: pgl
Funciton: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Locus tag: Atu0598
Name: edd
Funciton: Phosphogluconate dehydratase (EC 4.2.1.12)
Atu0600
zwf
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Atu0599
pgl
6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Atu0598
edd
Phosphogluconate dehydratase (EC 4.2.1.12)
Position: -109
Score: 5.4
Sequence: AGTTTCAAACGATTGAAATC
Position: -90
Score: 5
Sequence: CATTTCAATCGTTTCAATGA
Locus tag: Atu3740
Name: fba
Funciton: Fructose-bisphosphate aldolase class I (EC 4.1.2.13)
Atu3740
fba
Fructose-bisphosphate aldolase class I (EC 4.1.2.13)
Position: -157
Score: 5.1
Sequence: GTCTTCAACCGATTTAAAAA
Position: -127
Score: 5.4
Sequence: CTTTTAAATCGATTAATATA
Locus tag: Atu0035
Name: pckA
Funciton: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
Atu0035
pckA
Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
Position: -51
Score: 5.2
Sequence: CGTCTAAATCGATTTAAGTT
Locus tag: Atu0401
Name: scrK
Funciton: Fructokinase (EC 2.7.1.4)
Atu0401
scrK
Fructokinase (EC 2.7.1.4)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise