Regulon of SoxR in Agrobacterium tumefaciens str. C58 (Cereon)
| Regulator type: | Transcription factor |
| TF locus tag: | Atu3915 |
| Regulator family: | MerR |
| Regulation mode: | activator (repressor) |
| Biological process: | Superoxide stress response |
| Effector: | Paraquat |
| Regulog: | SoxR - Rhizobiales |
| Statistics of regulated genes: | |
| - Genes | 6 |
| - Operons | 4 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhizobiales
- By trascription factor - SoxR
- By TF family - MerR
- By effector - Paraquat
- By pathway - Superoxide stress response
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -91
Score: 6.1 Sequence: ACCTCAACTATAGTTGAGGA
Locus tag: Atu3915
Name: soxR Funciton: Redox-sensitive transcriptional activator, MerR family |
|||
|
soxR
|
Redox-sensitive transcriptional activator, MerR family
|
||
|
Position: -96
Score: 5.8 Sequence: ACCTCAACCGTGATTGAGGT
Locus tag: Atu4583
Name: sodB Funciton: Superoxide dismutase( EC:1.15.1.1 )
Locus tag: Atu4582
Name: fdxA Funciton: 4Fe-4S ferredoxin, iron-sulfur binding
Locus tag: Atu4581
Name: PF01613 Funciton: Putative flavin reductase |
|||
|
sodB
|
Superoxide dismutase( EC:1.15.1.1 )
|
||
|
fdxA
|
4Fe-4S ferredoxin, iron-sulfur binding
|
||
|
PF01613
|
Putative flavin reductase
|
||
|
Position: -56
Score: 6 Sequence: ACCTCAACTATGGTTGAGGA
Locus tag: Atu2361
Name: PF07690 Funciton: Permease of the major facilitator superfamily |
|||
|
PF07690
|
Permease of the major facilitator superfamily
|
||
|
Position: -78
Score: 5.3 Sequence: ACCTCAATGGCGCTTGAGGT
Locus tag: Atu0942
Name: PF07690 Funciton: Permease of the major facilitator superfamily |
|||
|
PF07690
|
Permease of the major facilitator superfamily
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |