Regulog SoxR - Rhizobiales

Properties
Regulator type:	Transcription factor
Regulator family:	MerR
Regulation mode:	activator (repressor)
Biological process:	Superoxide stress response
Effector:	Paraquat
Phylum:	Proteobacteria/Alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 22 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By trascription factor - SoxR
By TF family - MerR
By effector - Paraquat
By pathway - Superoxide stress response

Statistics of regulated genes
Genome	Genes	Operons
Sinorhizobium meliloti 1021	4	4
Rhizobium sp. NGR234	3	3
Rhizobium leguminosarum bv. viciae 3841	4	4
Rhizobium etli CFN 42	2	2
Agrobacterium tumefaciens str. C58 (Cereon)	6	4
Mesorhizobium sp. BNC1
Mesorhizobium loti MAFF303099	3	3
Brucella melitensis 16M
Bartonella quintana str. Toulouse
Rhodopseudomonas palustris CGA009
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1
Nitrobacter winogradskyi Nb-255
Azorhizobium caulinodans ORS 571
Xanthobacter autotrophicus Py2	2	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
soxR	* Sinorhizobium meliloti 1021 Site: position = -31 score = 6.50664 sequence = ACCTCAACTATAGTTGAGGT Gene: SMc00182: Redox-sensitive transcriptional activator, MerR family	* Rhizobium sp. NGR234 Site: position = -31 score = 6.53382 sequence = ACCTCAAGCTTAGTTGAGGT Gene: NGR_c16780: Redox-sensitive transcriptional activator, MerR family	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -29 score = 6.25286 sequence = ACCTCAACTAATCTTGAGGT Gene: RL4397: Redox-sensitive transcriptional activator, MerR family	* Rhizobium etli CFN 42 Site: position = -29 score = 5.97121 sequence = ACCTCAACTAATATTGAGGT Gene: RHE_CH03863: Redox-sensitive transcriptional activator, MerR family	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -91 score = 6.13279 sequence = ACCTCAACTATAGTTGAGGA Gene: Atu3915: Redox-sensitive transcriptional activator, MerR family	Mesorhizobium sp. BNC1	* Mesorhizobium loti MAFF303099 Site: position = -37 score = 6.02992 sequence = AGCTCAACATAACTTGAGGT Gene: mlr2720: Redox-sensitive transcriptional activator, MerR family	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	* Xanthobacter autotrophicus Py2 Site: position = 26 score = 5.63459 sequence = ACCTCGAGTATGGTTTAGGT Gene: Xaut_1053: Redox-sensitive transcriptional activator, MerR family	Redox-sensitive transcriptional activator, MerR family

CRON 2.
PF03358	* Sinorhizobium meliloti 1021 Site: position = -67 score = 6.50664 sequence = ACCTCAACTATAGTTGAGGT Gene: SMc00183: NADPH-dependent FMN reductase	* Rhizobium sp. NGR234 Site: position = -68 score = 6.53382 sequence = ACCTCAACTAAGCTTGAGGT Gene: NGR_c16770: NADPH-dependent FMN reductase	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -74 score = 6.25286 sequence = ACCTCAAGATTAGTTGAGGT Gene: RL4398: NADPH-dependent FMN reductase	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	NADPH-dependent FMN reductase

CRON 3.
PF07690	* Sinorhizobium meliloti 1021 Site: position = -62 score = 5.68984 sequence = ACCTCAACCGCGATTGAGGT Gene: SMc01217: Permease of the major facilitator superfamily	* Rhizobium sp. NGR234 Site: position = -63 score = 5.69283 sequence = ACCTCAAGAGCGCTTGAGGT Gene: NGR_c15730: Permease of the major facilitator superfamily	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -78 score = 5.33207 sequence = ACCTCAATGGCGCTTGAGGT Gene: Atu0942: Permease of the major facilitator superfamily	Mesorhizobium sp. BNC1	* Mesorhizobium loti MAFF303099 Site: position = -161 score = 5.57557 sequence = AGCTCAACCGCGGTTGAGGT Gene: mlr3125: Permease of the major facilitator superfamily	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Permease of the major facilitator superfamily

CRON 4.
PF03992	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -63 score = 6.03762 sequence = ACCTCAGGTTAACTTGAGGA Gene: RL3412: Monooxygenase	* Rhizobium etli CFN 42 Site: position = -60 score = 5.98697 sequence = ACCTCAACCATAGTTGAGGA Gene: RHE_CH02961: Monooxygenase	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	* Mesorhizobium loti MAFF303099 Site: position = -75 score = 6.34985 sequence = ACCTCAACTTAAGTTGAGAT Gene: mlr7819: Monooxygenase	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Monooxygenase

CRON 5.
SMc03095	* Sinorhizobium meliloti 1021 Site: position = -59 score = 6.24021 sequence = ACCTCAAGTACGGTTGAGGT Gene: SMc03095: HYPOTHETICAL UNKNOWN PROTEIN	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	HYPOTHETICAL UNKNOWN PROTEIN

CRON 6.
PF07690	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -56 score = 5.98697 sequence = ACCTCAACTATGGTTGAGGA Gene: Atu2361: Permease of the major facilitator superfamily	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Permease of the major facilitator superfamily

CRON 7.
PF00903	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -69 score = 5.98184 sequence = ACCTCAACCGATGTTGAGGT Gene: RL4165: Glyoxalase/bleomycin resistance protein/dioxygenase	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Glyoxalase/bleomycin resistance protein/dioxygenase

CRON 8.
sodB	Sinorhizobium meliloti 1021 Gene: SMc00043: Superoxide dismutase( EC:1.15.1.1 )	Rhizobium sp. NGR234 Gene: NGR_c07300: Superoxide dismutase( EC:1.15.1.1 )	Rhizobium leguminosarum bv. viciae 3841 Gene: RL1340: Superoxide dismutase( EC:1.15.1.1 )	Rhizobium etli CFN 42 Gene: RHE_CH01203: Superoxide dismutase( EC:1.15.1.1 )	3 Agrobacterium tumefaciens str. C58 (Cereon)* Gene: Atu4726: Superoxide dismutase( EC:1.15.1.1 ) Site: position = -96 score = 5.81275 sequence = ACCTCAACCGTGATTGAGGT Gene: Atu4583: Superoxide dismutase( EC:1.15.1.1 ) Gene: Atu0876: Superoxide dismutase( EC:1.15.1.1 )	Mesorhizobium sp. BNC1 Gene: Meso_0861: Superoxide dismutase( EC:1.15.1.1 )	Mesorhizobium loti MAFF303099 Gene: mlr7636: Superoxide dismutase( EC:1.15.1.1 )	Brucella melitensis 16M Gene: BMEI1367: Superoxide dismutase( EC:1.15.1.1 )	Bartonella quintana str. Toulouse Gene: BQ03820: Superoxide dismutase( EC:1.15.1.1 )	Rhodopseudomonas palustris CGA009 Gene: RPA1693: Superoxide dismutase( EC:1.15.1.1 )	Bradyrhizobium japonicum USDA 110 Gene: bll7774: Superoxide dismutase( EC:1.15.1.1 )	Bradyrhizobium sp. BTAi1 Gene: BBta_1335: Superoxide dismutase( EC:1.15.1.1 )	Nitrobacter winogradskyi Nb-255 Gene: Nwi_0913: Superoxide dismutase( EC:1.15.1.1 )	2 Azorhizobium caulinodans ORS 571 Gene: AZC_1140: Superoxide dismutase( EC:1.15.1.1 ) Gene: AZC_3053: Superoxide dismutase( EC:1.15.1.1 )	Xanthobacter autotrophicus Py2 Gene: Xaut_3319: Superoxide dismutase( EC:1.15.1.1 )	Superoxide dismutase( EC:1.15.1.1 )
fdxA	Sinorhizobium meliloti 1021 Gene: SMc03875: 4Fe-4S ferredoxin, iron-sulfur binding	Rhizobium sp. NGR234 Gene: NGR_c32680: 4Fe-4S ferredoxin, iron-sulfur binding	Rhizobium leguminosarum bv. viciae 3841 Gene: RL4616: 4Fe-4S ferredoxin, iron-sulfur binding	Rhizobium etli CFN 42 Gene: RHE_CH04024: 4Fe-4S ferredoxin, iron-sulfur binding	2 Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu4582: 4Fe-4S ferredoxin, iron-sulfur binding Gene: Atu2751: 4Fe-4S ferredoxin, iron-sulfur binding	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M Gene: BMEI0278: 4Fe-4S ferredoxin, iron-sulfur binding	Bartonella quintana str. Toulouse Gene: BQ12140: 4Fe-4S ferredoxin, iron-sulfur binding	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	4Fe-4S ferredoxin, iron-sulfur binding
PF01613	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu4581: Putative flavin reductase	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Putative flavin reductase

CRON 9.
PF00106	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	* Xanthobacter autotrophicus Py2 Site: position = -145 score = 5.63459 sequence = ACCTAAACCATACTCGAGGT Gene: Xaut_1054: short-chain dehydrogenase/reductase SDR	oxidoreductase, short-chain dehydrogenase/reductase family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog SoxR - Rhizobiales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --