Regulon of RhaR in Agrobacterium tumefaciens str. C58 (Cereon)
| Regulator type: | Transcription factor |
| TF locus tag: | Atu3486 |
| Regulator family: | DeoR |
| Regulation mode: | repressor |
| Biological process: | Rhamnose utilization |
| Effector: | Rhamnose |
| Regulog: | RhaR - Rhizobiales |
| Statistics of regulated genes: | |
| - Genes | 9 |
| - Operons | 2 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhizobiales
- By TF family - DeoR
- By effector - Rhamnose
- By pathway - Rhamnose utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -158
Score: 6.4 Sequence: TCAATCA-(3)-ACGATCA
Position: -117
Score: 5.6 Sequence: ATGAAAA-(3)-ATGATCG
Position: -107
Score: 6.7 Sequence: ATGATCG-(3)-TTGATTG
Locus tag: Atu3485
Name: rhaEW Funciton: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Lactaldehyde dehydrogenase (EC 1.2.1.22)
Locus tag: Atu3484
Name: rhaI Funciton: L-rhamnose isomerase (EC 5.3.1.14) |
|||
|
rhaEW
|
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Lactaldehyde dehydrogenase (EC 1.2.1.22)
|
||
|
rhaI
|
L-rhamnose isomerase (EC 5.3.1.14)
|
||
|
Position: -111
Score: 6.4 Sequence: TCAATCA-(3)-ACGATCA
Position: -60
Score: 6.7 Sequence: TTGATCG-(3)-TTGATTG
Locus tag: Atu3486
Name: rhaR Funciton: Predicted transcriptional regulator for rhamnose utilization, DeoR family
Locus tag: Atu3487
Name: rhaF Funciton: L-rhamnose ABC transporter, periplasmic rhamnose-binding protein
Locus tag: Atu3488
Name: rhaG Funciton: L-rhamnose ABC transporter, duplicated ATP-binding component
Locus tag: Atu3489
Name: rhaH Funciton: L-rhamnose ABC transporter, permease component 1
Locus tag: Atu3490
Name: rhaJ Funciton: L-rhamnose ABC transporter, permease component 2
Locus tag: Atu3491
Name: rhaM Funciton: L-rhamnose mutarotase
Locus tag: Atu3492
Name: rhaK Funciton: putative rhamnulokinase |
|||
|
rhaR
|
Predicted transcriptional regulator for rhamnose utilization, DeoR family
|
||
|
rhaF
|
L-rhamnose ABC transporter, periplasmic rhamnose-binding protein
|
||
|
rhaG
|
L-rhamnose ABC transporter, duplicated ATP-binding component
|
||
|
rhaH
|
L-rhamnose ABC transporter, permease component 1
|
||
|
rhaJ
|
L-rhamnose ABC transporter, permease component 2
|
||
|
rhaM
|
L-rhamnose mutarotase
|
||
|
rhaK
|
putative rhamnulokinase
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |