Regulog RhaR - Rhizobiales
| Regulator type: | Transcription factor |
| Regulator family: | DeoR |
| Regulation mode: | repressor |
| Biological process: | Rhamnose utilization |
| Effector: | Rhamnose |
| Phylum: | Proteobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhizobiales
- By TF family - DeoR
- By effector - Rhamnose
- By pathway - Rhamnose utilization
| Genome | Genes | Operons |
|---|---|---|
| Sinorhizobium meliloti 1021 | 9 | 2 |
| Rhizobium sp. NGR234 | 9 | 2 |
| Rhizobium leguminosarum bv. viciae 3841 | 9 | 2 |
| Rhizobium etli CFN 42 | 9 | 2 |
| Agrobacterium tumefaciens str. C58 (Cereon) | 9 | 2 |
| Mesorhizobium loti MAFF303099 | 9 | 2 |
| Mesorhizobium sp. BNC1 | ||
| Bartonella quintana str. Toulouse | ||
| Brucella melitensis 16M | ||
| Rhodopseudomonas palustris CGA009 | ||
| Bradyrhizobium japonicum USDA 110 | ||
| Bradyrhizobium sp. BTAi1 | ||
| Nitrobacter winogradskyi Nb-255 | ||
| Azorhizobium caulinodans ORS 571 | ||
| Xanthobacter autotrophicus Py2 |
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| rhaR |
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Sinorhizobium meliloti 1021 Site: position = -63 score = 5.83393 sequence = ATGATTG-(3)-GTGATTG Site: position = -53 score = 5.26477 sequence = GTGATTG-(3)-ATGCTCG Site: position = -114 score = 6.3558 sequence = TCAATCA-(3)-ACGATCA Gene: SMc02323: Predicted transcriptional regulator for rhamnose utilization, DeoR family |
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Rhizobium sp. NGR234 Site: position = -53 score = 5.26477 sequence = CTGATTG-(3)-ATGCTCG Site: position = -73 score = 5.637 sequence = ATGAAAA-(3)-ATGATCG Site: position = -63 score = 6.09321 sequence = ATGATCG-(3)-CTGATTG Site: position = -114 score = 6.3558 sequence = TCAATCA-(3)-ACGATCA Gene: NGR_c02440: Predicted transcriptional regulator for rhamnose utilization, DeoR family |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -113 score = 6.42506 sequence = TCAATCG-(3)-ACGATCA Site: position = -103 score = 6.40869 sequence = ACGATCA-(3)-TCGATTA Site: position = -72 score = 5.637 sequence = ATGAAAA-(3)-ATGATCG Site: position = -62 score = 6.65774 sequence = ATGATCG-(3)-TTGATTG Gene: pRL110414: Predicted transcriptional regulator for rhamnose utilization, DeoR family |
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Rhizobium etli CFN 42 Site: position = -64 score = 6.65774 sequence = ATGATCG-(3)-ATGATTG Site: position = -105 score = 6.40869 sequence = ACGATCA-(3)-TCGATTA Site: position = -115 score = 6.42506 sequence = TCAATCG-(3)-ACGATCA Gene: RHE_PE00290: Predicted transcriptional regulator for rhamnose utilization, DeoR family |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -111 score = 6.3558 sequence = TCAATCA-(3)-ACGATCA Site: position = -60 score = 6.65774 sequence = TTGATCG-(3)-TTGATTG Gene: Atu3486: Predicted transcriptional regulator for rhamnose utilization, DeoR family |
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Mesorhizobium loti MAFF303099 Site: position = -113 score = 6.3558 sequence = TCAATCA-(3)-ACGATCA Site: position = -107 score = 5.15555 sequence = ATAAACG-(3)-AAGATCG Site: position = -103 score = 6.66797 sequence = ACGATCA-(3)-TCGATCA Site: position = -62 score = 6.65774 sequence = ATGATCG-(3)-ATGATTG Gene: mll5707: Predicted transcriptional regulator for rhamnose utilization, DeoR family |
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Predicted transcriptional regulator for rhamnose utilization, DeoR family |
| rhaF |
Gene: SMc02324: L-rhamnose ABC transporter, periplasmic rhamnose-binding protein |
Gene: NGR_c02450: L-rhamnose ABC transporter, periplasmic rhamnose-binding protein |
Gene: pRL110413: L-rhamnose ABC transporter, periplasmic rhamnose-binding protein |
Gene: RHE_PE00289: L-rhamnose ABC transporter, periplasmic rhamnose-binding protein |
Gene: Atu3487: L-rhamnose ABC transporter, periplasmic rhamnose-binding protein |
Gene: mll5706: L-rhamnose ABC transporter, periplasmic rhamnose-binding protein |
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L-rhamnose ABC transporter, periplasmic rhamnose-binding protein |
| rhaG |
Gene: SMc02325: L-rhamnose ABC transporter, duplicated ATP-binding component |
Gene: NGR_c02460: L-rhamnose ABC transporter, duplicated ATP-binding component |
Gene: pRL110412: L-rhamnose ABC transporter, duplicated ATP-binding component |
Gene: RHE_PE00288: L-rhamnose ABC transporter, duplicated ATP-binding component |
Gene: Atu3488: L-rhamnose ABC transporter, duplicated ATP-binding component |
Gene: mll5705: L-rhamnose ABC transporter, duplicated ATP-binding component |
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L-rhamnose ABC transporter, duplicated ATP-binding component |
| rhaH |
Gene: SMc03000: L-rhamnose ABC transporter, permease component 1 |
Gene: NGR_c02470: L-rhamnose ABC transporter, permease component 1 |
Gene: pRL110411: L-rhamnose ABC transporter, permease component 1 |
Gene: RHE_PE00287: L-rhamnose ABC transporter, permease component 1 |
Gene: Atu3489: L-rhamnose ABC transporter, permease component 1 |
Gene: mll5704: L-rhamnose ABC transporter, permease component 1 |
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L-rhamnose ABC transporter, permease component 1 |
| rhaJ |
Gene: SMc03001: L-rhamnose ABC transporter, permease component 2 |
Gene: NGR_c02480: L-rhamnose ABC transporter, permease component 2 |
Gene: pRL110410: L-rhamnose ABC transporter, permease component 2 |
Gene: RHE_PE00286: L-rhamnose ABC transporter, permease component 2 |
Gene: Atu3490: L-rhamnose ABC transporter, permease component 2 |
Gene: mll5703: L-rhamnose ABC transporter, permease component 2 |
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L-rhamnose ABC transporter, permease component 2 |
| rhaM |
Gene: SMc03002: L-rhamnose mutarotase |
Gene: NGR_c02490: L-rhamnose mutarotase |
Gene: pRL110409: L-rhamnose mutarotase |
Gene: RHE_PE00285: L-rhamnose mutarotase |
Gene: Atu3491: L-rhamnose mutarotase |
Gene: mll5702: L-rhamnose mutarotase |
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L-rhamnose mutarotase |
| rhaK |
Gene: SMc03003: putative rhamnulokinase |
Gene: NGR_c02500: putative rhamnulokinase |
Gene: pRL110408: putative rhamnulokinase |
Gene: RHE_PE00284: putative rhamnulokinase |
Gene: Atu3492: putative rhamnulokinase |
Gene: mll5701: putative rhamnulokinase |
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putative rhamnulokinase |
| CRON 2. | ||||||||||||||||
| rhaEW |
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Sinorhizobium meliloti 1021 Site: position = -104 score = 6.65774 sequence = TTGATCG-(3)-TTGATTG Site: position = -114 score = 6.30565 sequence = ATGAACG-(3)-TTGATCG Site: position = -155 score = 6.04363 sequence = TCAATCA-(3)-TCAATCA Gene: SMc02322: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Lactaldehyde dehydrogenase (EC 1.2.1.22) |
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Rhizobium sp. NGR234 Site: position = -105 score = 6.09321 sequence = CTGATCG-(3)-TTGATTG Site: position = -156 score = 6.3558 sequence = TCAATCA-(3)-TCGATCA Site: position = -115 score = 5.74113 sequence = ATGAACG-(3)-CTGATCG Gene: NGR_c02430: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Lactaldehyde dehydrogenase (EC 1.2.1.22) |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -153 score = 6.3558 sequence = TCAATCA-(3)-ACGATCA Site: position = -112 score = 6.60485 sequence = ATAATCG-(3)-TTGATCG Site: position = -102 score = 6.60247 sequence = TTGATCG-(3)-TCGATTG Gene: pRL110415: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Lactaldehyde dehydrogenase (EC 1.2.1.22) |
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Rhizobium etli CFN 42 Site: position = -101 score = 6.60247 sequence = TTGATCG-(3)-TCGATTG Site: position = -152 score = 6.3558 sequence = TCAATCA-(3)-ACGATCA Site: position = -111 score = 6.60485 sequence = ATAATCG-(3)-TTGATCG Gene: RHE_PE00291: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Lactaldehyde dehydrogenase (EC 1.2.1.22) |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -107 score = 6.65774 sequence = ATGATCG-(3)-TTGATTG Site: position = -158 score = 6.3558 sequence = TCAATCA-(3)-ACGATCA Site: position = -117 score = 5.637 sequence = ATGAAAA-(3)-ATGATCG Gene: Atu3485: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Lactaldehyde dehydrogenase (EC 1.2.1.22) |
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Mesorhizobium loti MAFF303099 Site: position = -150 score = 5.39465 sequence = ACGAGCA-(3)-TCAATCA Site: position = -140 score = 5.79128 sequence = TCAATCA-(3)-CCGATCA Site: position = -99 score = 6.91702 sequence = ATGATCG-(3)-TTGATCG Site: position = -89 score = 6.65774 sequence = TTGATCG-(3)-ATGATTG Gene: mlr5708: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Lactaldehyde dehydrogenase (EC 1.2.1.22) |
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Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Lactaldehyde dehydrogenase (EC 1.2.1.22) |
| rhaI |
Gene: SMc02321: L-rhamnose isomerase (EC 5.3.1.14) |
Gene: NGR_c02420: L-rhamnose isomerase (EC 5.3.1.14) |
Gene: pRL110416: L-rhamnose isomerase (EC 5.3.1.14) |
Gene: RHE_PE00292: L-rhamnose isomerase (EC 5.3.1.14) |
Gene: Atu3484: L-rhamnose isomerase (EC 5.3.1.14) |
Gene: mlr5709: L-rhamnose isomerase (EC 5.3.1.14) |
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L-rhamnose isomerase (EC 5.3.1.14) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |