Regulog RhaR - Rhizobiales

Properties
Regulator type:	Transcription factor
Regulator family:	DeoR
Regulation mode:	repressor
Biological process:	Rhamnose utilization
Effector:	Rhamnose
Phylum:	Proteobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 39 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By TF family - DeoR
By effector - Rhamnose
By pathway - Rhamnose utilization

Statistics of regulated genes
Genome	Genes	Operons
Sinorhizobium meliloti 1021	9	2
Rhizobium sp. NGR234	9	2
Rhizobium leguminosarum bv. viciae 3841	9	2
Rhizobium etli CFN 42	9	2
Agrobacterium tumefaciens str. C58 (Cereon)	9	2
Mesorhizobium loti MAFF303099	9	2
Mesorhizobium sp. BNC1
Bartonella quintana str. Toulouse
Brucella melitensis 16M
Rhodopseudomonas palustris CGA009
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1
Nitrobacter winogradskyi Nb-255
Azorhizobium caulinodans ORS 571
Xanthobacter autotrophicus Py2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
rhaR	* Sinorhizobium meliloti 1021 Site: position = -63 score = 5.83393 sequence = ATGATTG-(3)-GTGATTG Site: position = -53 score = 5.26477 sequence = GTGATTG-(3)-ATGCTCG Site: position = -114 score = 6.3558 sequence = TCAATCA-(3)-ACGATCA Gene: SMc02323: Predicted transcriptional regulator for rhamnose utilization, DeoR family	* Rhizobium sp. NGR234 Site: position = -53 score = 5.26477 sequence = CTGATTG-(3)-ATGCTCG Site: position = -73 score = 5.637 sequence = ATGAAAA-(3)-ATGATCG Site: position = -63 score = 6.09321 sequence = ATGATCG-(3)-CTGATTG Site: position = -114 score = 6.3558 sequence = TCAATCA-(3)-ACGATCA Gene: NGR_c02440: Predicted transcriptional regulator for rhamnose utilization, DeoR family	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -113 score = 6.42506 sequence = TCAATCG-(3)-ACGATCA Site: position = -103 score = 6.40869 sequence = ACGATCA-(3)-TCGATTA Site: position = -72 score = 5.637 sequence = ATGAAAA-(3)-ATGATCG Site: position = -62 score = 6.65774 sequence = ATGATCG-(3)-TTGATTG Gene: pRL110414: Predicted transcriptional regulator for rhamnose utilization, DeoR family	* Rhizobium etli CFN 42 Site: position = -64 score = 6.65774 sequence = ATGATCG-(3)-ATGATTG Site: position = -105 score = 6.40869 sequence = ACGATCA-(3)-TCGATTA Site: position = -115 score = 6.42506 sequence = TCAATCG-(3)-ACGATCA Gene: RHE_PE00290: Predicted transcriptional regulator for rhamnose utilization, DeoR family	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -111 score = 6.3558 sequence = TCAATCA-(3)-ACGATCA Site: position = -60 score = 6.65774 sequence = TTGATCG-(3)-TTGATTG Gene: Atu3486: Predicted transcriptional regulator for rhamnose utilization, DeoR family	* Mesorhizobium loti MAFF303099 Site: position = -113 score = 6.3558 sequence = TCAATCA-(3)-ACGATCA Site: position = -107 score = 5.15555 sequence = ATAAACG-(3)-AAGATCG Site: position = -103 score = 6.66797 sequence = ACGATCA-(3)-TCGATCA Site: position = -62 score = 6.65774 sequence = ATGATCG-(3)-ATGATTG Gene: mll5707: Predicted transcriptional regulator for rhamnose utilization, DeoR family	Mesorhizobium sp. BNC1	Bartonella quintana str. Toulouse	Brucella melitensis 16M	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Predicted transcriptional regulator for rhamnose utilization, DeoR family
rhaF	Sinorhizobium meliloti 1021 Gene: SMc02324: L-rhamnose ABC transporter, periplasmic rhamnose-binding protein	Rhizobium sp. NGR234 Gene: NGR_c02450: L-rhamnose ABC transporter, periplasmic rhamnose-binding protein	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL110413: L-rhamnose ABC transporter, periplasmic rhamnose-binding protein	Rhizobium etli CFN 42 Gene: RHE_PE00289: L-rhamnose ABC transporter, periplasmic rhamnose-binding protein	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3487: L-rhamnose ABC transporter, periplasmic rhamnose-binding protein	Mesorhizobium loti MAFF303099 Gene: mll5706: L-rhamnose ABC transporter, periplasmic rhamnose-binding protein	Mesorhizobium sp. BNC1	Bartonella quintana str. Toulouse	Brucella melitensis 16M	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	L-rhamnose ABC transporter, periplasmic rhamnose-binding protein
rhaG	Sinorhizobium meliloti 1021 Gene: SMc02325: L-rhamnose ABC transporter, duplicated ATP-binding component	Rhizobium sp. NGR234 Gene: NGR_c02460: L-rhamnose ABC transporter, duplicated ATP-binding component	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL110412: L-rhamnose ABC transporter, duplicated ATP-binding component	Rhizobium etli CFN 42 Gene: RHE_PE00288: L-rhamnose ABC transporter, duplicated ATP-binding component	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3488: L-rhamnose ABC transporter, duplicated ATP-binding component	Mesorhizobium loti MAFF303099 Gene: mll5705: L-rhamnose ABC transporter, duplicated ATP-binding component	Mesorhizobium sp. BNC1	Bartonella quintana str. Toulouse	Brucella melitensis 16M	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	L-rhamnose ABC transporter, duplicated ATP-binding component
rhaH	Sinorhizobium meliloti 1021 Gene: SMc03000: L-rhamnose ABC transporter, permease component 1	Rhizobium sp. NGR234 Gene: NGR_c02470: L-rhamnose ABC transporter, permease component 1	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL110411: L-rhamnose ABC transporter, permease component 1	Rhizobium etli CFN 42 Gene: RHE_PE00287: L-rhamnose ABC transporter, permease component 1	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3489: L-rhamnose ABC transporter, permease component 1	Mesorhizobium loti MAFF303099 Gene: mll5704: L-rhamnose ABC transporter, permease component 1	Mesorhizobium sp. BNC1	Bartonella quintana str. Toulouse	Brucella melitensis 16M	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	L-rhamnose ABC transporter, permease component 1
rhaJ	Sinorhizobium meliloti 1021 Gene: SMc03001: L-rhamnose ABC transporter, permease component 2	Rhizobium sp. NGR234 Gene: NGR_c02480: L-rhamnose ABC transporter, permease component 2	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL110410: L-rhamnose ABC transporter, permease component 2	Rhizobium etli CFN 42 Gene: RHE_PE00286: L-rhamnose ABC transporter, permease component 2	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3490: L-rhamnose ABC transporter, permease component 2	Mesorhizobium loti MAFF303099 Gene: mll5703: L-rhamnose ABC transporter, permease component 2	Mesorhizobium sp. BNC1	Bartonella quintana str. Toulouse	Brucella melitensis 16M	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	L-rhamnose ABC transporter, permease component 2
rhaM	Sinorhizobium meliloti 1021 Gene: SMc03002: L-rhamnose mutarotase	Rhizobium sp. NGR234 Gene: NGR_c02490: L-rhamnose mutarotase	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL110409: L-rhamnose mutarotase	Rhizobium etli CFN 42 Gene: RHE_PE00285: L-rhamnose mutarotase	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3491: L-rhamnose mutarotase	Mesorhizobium loti MAFF303099 Gene: mll5702: L-rhamnose mutarotase	Mesorhizobium sp. BNC1	Bartonella quintana str. Toulouse	Brucella melitensis 16M	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	L-rhamnose mutarotase
rhaK	Sinorhizobium meliloti 1021 Gene: SMc03003: putative rhamnulokinase	Rhizobium sp. NGR234 Gene: NGR_c02500: putative rhamnulokinase	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL110408: putative rhamnulokinase	Rhizobium etli CFN 42 Gene: RHE_PE00284: putative rhamnulokinase	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3492: putative rhamnulokinase	Mesorhizobium loti MAFF303099 Gene: mll5701: putative rhamnulokinase	Mesorhizobium sp. BNC1	Bartonella quintana str. Toulouse	Brucella melitensis 16M	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	putative rhamnulokinase

CRON 2.
rhaEW	* Sinorhizobium meliloti 1021 Site: position = -104 score = 6.65774 sequence = TTGATCG-(3)-TTGATTG Site: position = -114 score = 6.30565 sequence = ATGAACG-(3)-TTGATCG Site: position = -155 score = 6.04363 sequence = TCAATCA-(3)-TCAATCA Gene: SMc02322: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Lactaldehyde dehydrogenase (EC 1.2.1.22)	* Rhizobium sp. NGR234 Site: position = -105 score = 6.09321 sequence = CTGATCG-(3)-TTGATTG Site: position = -156 score = 6.3558 sequence = TCAATCA-(3)-TCGATCA Site: position = -115 score = 5.74113 sequence = ATGAACG-(3)-CTGATCG Gene: NGR_c02430: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Lactaldehyde dehydrogenase (EC 1.2.1.22)	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -153 score = 6.3558 sequence = TCAATCA-(3)-ACGATCA Site: position = -112 score = 6.60485 sequence = ATAATCG-(3)-TTGATCG Site: position = -102 score = 6.60247 sequence = TTGATCG-(3)-TCGATTG Gene: pRL110415: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Lactaldehyde dehydrogenase (EC 1.2.1.22)	* Rhizobium etli CFN 42 Site: position = -101 score = 6.60247 sequence = TTGATCG-(3)-TCGATTG Site: position = -152 score = 6.3558 sequence = TCAATCA-(3)-ACGATCA Site: position = -111 score = 6.60485 sequence = ATAATCG-(3)-TTGATCG Gene: RHE_PE00291: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Lactaldehyde dehydrogenase (EC 1.2.1.22)	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -107 score = 6.65774 sequence = ATGATCG-(3)-TTGATTG Site: position = -158 score = 6.3558 sequence = TCAATCA-(3)-ACGATCA Site: position = -117 score = 5.637 sequence = ATGAAAA-(3)-ATGATCG Gene: Atu3485: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Lactaldehyde dehydrogenase (EC 1.2.1.22)	* Mesorhizobium loti MAFF303099 Site: position = -150 score = 5.39465 sequence = ACGAGCA-(3)-TCAATCA Site: position = -140 score = 5.79128 sequence = TCAATCA-(3)-CCGATCA Site: position = -99 score = 6.91702 sequence = ATGATCG-(3)-TTGATCG Site: position = -89 score = 6.65774 sequence = TTGATCG-(3)-ATGATTG Gene: mlr5708: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Lactaldehyde dehydrogenase (EC 1.2.1.22)	Mesorhizobium sp. BNC1	Bartonella quintana str. Toulouse	Brucella melitensis 16M	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Lactaldehyde dehydrogenase (EC 1.2.1.22)
rhaI	Sinorhizobium meliloti 1021 Gene: SMc02321: L-rhamnose isomerase (EC 5.3.1.14)	Rhizobium sp. NGR234 Gene: NGR_c02420: L-rhamnose isomerase (EC 5.3.1.14)	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL110416: L-rhamnose isomerase (EC 5.3.1.14)	Rhizobium etli CFN 42 Gene: RHE_PE00292: L-rhamnose isomerase (EC 5.3.1.14)	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3484: L-rhamnose isomerase (EC 5.3.1.14)	Mesorhizobium loti MAFF303099 Gene: mlr5709: L-rhamnose isomerase (EC 5.3.1.14)	Mesorhizobium sp. BNC1	Bartonella quintana str. Toulouse	Brucella melitensis 16M	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	L-rhamnose isomerase (EC 5.3.1.14)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog RhaR - Rhizobiales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --