Profile of regulator RhaR in Rhizobiales
Properties
| Regulator family: |
DeoR |
| Regulation mode: |
repressor |
| Biological process: |
Rhamnose utilization |
| Effector: |
Rhamnose |
| Regulog: |
RhaR - Rhizobiales |
Member of regulog collections
Transcription factor binding sites
|
Locus Tag |
Name |
Position |
Score |
Sequence |
|
Sinorhizobium meliloti 1021
|
|
SMc02322 |
rhaEW |
-104 |
6.7 |
TTGATCG-(3)-TTGATTG |
|
SMc02323 |
rhaR |
-63 |
5.8 |
ATGATTG-(3)-GTGATTG |
|
SMc02323 |
rhaR |
-53 |
5.3 |
GTGATTG-(3)-ATGCTCG |
|
SMc02322 |
rhaEW |
-114 |
6.3 |
ATGAACG-(3)-TTGATCG |
|
SMc02322 |
rhaEW |
-155 |
6 |
TCAATCA-(3)-TCAATCA |
|
SMc02323 |
rhaR |
-114 |
6.4 |
TCAATCA-(3)-ACGATCA |
|
Rhizobium sp. NGR234
|
|
NGR_c02430 |
rhaEW |
-105 |
6.1 |
CTGATCG-(3)-TTGATTG |
|
NGR_c02440 |
rhaR |
-53 |
5.3 |
CTGATTG-(3)-ATGCTCG |
|
NGR_c02440 |
rhaR |
-73 |
5.6 |
ATGAAAA-(3)-ATGATCG |
|
NGR_c02440 |
rhaR |
-63 |
6.1 |
ATGATCG-(3)-CTGATTG |
|
NGR_c02440 |
rhaR |
-114 |
6.4 |
TCAATCA-(3)-ACGATCA |
|
NGR_c02430 |
rhaEW |
-156 |
6.4 |
TCAATCA-(3)-TCGATCA |
|
NGR_c02430 |
rhaEW |
-115 |
5.7 |
ATGAACG-(3)-CTGATCG |
|
Rhizobium leguminosarum bv. viciae 3841
|
|
pRL110414 |
rhaR |
-113 |
6.4 |
TCAATCG-(3)-ACGATCA |
|
pRL110414 |
rhaR |
-103 |
6.4 |
ACGATCA-(3)-TCGATTA |
|
pRL110414 |
rhaR |
-72 |
5.6 |
ATGAAAA-(3)-ATGATCG |
|
pRL110414 |
rhaR |
-62 |
6.7 |
ATGATCG-(3)-TTGATTG |
|
pRL110415 |
rhaEW |
-153 |
6.4 |
TCAATCA-(3)-ACGATCA |
|
pRL110415 |
rhaEW |
-112 |
6.6 |
ATAATCG-(3)-TTGATCG |
|
pRL110415 |
rhaEW |
-102 |
6.6 |
TTGATCG-(3)-TCGATTG |
|
Rhizobium etli CFN 42
|
|
RHE_PE00290 |
rhaR |
-64 |
6.7 |
ATGATCG-(3)-ATGATTG |
|
RHE_PE00290 |
rhaR |
-105 |
6.4 |
ACGATCA-(3)-TCGATTA |
|
RHE_PE00290 |
rhaR |
-115 |
6.4 |
TCAATCG-(3)-ACGATCA |
|
RHE_PE00291 |
rhaEW |
-101 |
6.6 |
TTGATCG-(3)-TCGATTG |
|
RHE_PE00291 |
rhaEW |
-152 |
6.4 |
TCAATCA-(3)-ACGATCA |
|
RHE_PE00291 |
rhaEW |
-111 |
6.6 |
ATAATCG-(3)-TTGATCG |
|
Agrobacterium tumefaciens str. C58 (Cereon)
|
|
Atu3486 |
rhaR |
-111 |
6.4 |
TCAATCA-(3)-ACGATCA |
|
Atu3486 |
rhaR |
-60 |
6.7 |
TTGATCG-(3)-TTGATTG |
|
Atu3485 |
rhaEW |
-107 |
6.7 |
ATGATCG-(3)-TTGATTG |
|
Atu3485 |
rhaEW |
-158 |
6.4 |
TCAATCA-(3)-ACGATCA |
|
Atu3485 |
rhaEW |
-117 |
5.6 |
ATGAAAA-(3)-ATGATCG |
|
Mesorhizobium loti MAFF303099
|
|
mll5707 |
rhaR |
-113 |
6.4 |
TCAATCA-(3)-ACGATCA |
|
mll5707 |
rhaR |
-107 |
5.2 |
ATAAACG-(3)-AAGATCG |
|
mll5707 |
rhaR |
-103 |
6.7 |
ACGATCA-(3)-TCGATCA |
|
mll5707 |
rhaR |
-62 |
6.7 |
ATGATCG-(3)-ATGATTG |
|
mlr5708 |
rhaEW |
-150 |
5.4 |
ACGAGCA-(3)-TCAATCA |
|
mlr5708 |
rhaEW |
-140 |
5.8 |
TCAATCA-(3)-CCGATCA |
|
mlr5708 |
rhaEW |
-99 |
6.9 |
ATGATCG-(3)-TTGATCG |
|
mlr5708 |
rhaEW |
-89 |
6.7 |
TTGATCG-(3)-ATGATTG |
Export
|
Regulatory Sites
|
[ FASTA format ]
|
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